Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2076 and Psest_2077 are separated by 37 nucleotides Psest_2077 and Psest_2078 overlap by 1 nucleotides Psest_2078 and Psest_2079 overlap by 33 nucleotides
Psest_2076: Psest_2076 - Enoyl-CoA hydratase/carnithine racemase, at 2,205,726 to 2,206,538
_2076
Psest_2077: Psest_2077 - hypothetical protein, at 2,206,576 to 2,208,258
_2077
Psest_2078: Psest_2078 - NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding, at 2,208,258 to 2,209,088
_2078
Psest_2079: Psest_2079 - Predicted permeases, at 2,209,056 to 2,209,841
_2079
Position (kb)
2206
2207
2208
2209 Strain fitness (log2 ratio)
-2
-1
0
1 at 2205.608 kb on - strand at 2205.654 kb on - strand at 2205.655 kb on + strand at 2205.656 kb on - strand at 2205.656 kb on - strand at 2205.656 kb on - strand at 2205.656 kb on - strand at 2205.656 kb on - strand at 2205.656 kb on - strand at 2205.656 kb on - strand at 2205.656 kb on - strand at 2205.735 kb on + strand at 2205.735 kb on + strand at 2205.736 kb on - strand at 2205.752 kb on - strand at 2205.843 kb on - strand, within Psest_2076 at 2206.123 kb on - strand, within Psest_2076 at 2206.244 kb on + strand, within Psest_2076 at 2206.245 kb on - strand, within Psest_2076 at 2206.302 kb on + strand, within Psest_2076 at 2206.302 kb on + strand, within Psest_2076 at 2206.303 kb on - strand, within Psest_2076 at 2206.303 kb on - strand, within Psest_2076 at 2206.303 kb on - strand, within Psest_2076 at 2206.303 kb on - strand, within Psest_2076 at 2206.405 kb on - strand, within Psest_2076 at 2206.406 kb on + strand, within Psest_2076 at 2206.406 kb on + strand, within Psest_2076 at 2206.407 kb on - strand, within Psest_2076 at 2206.440 kb on + strand, within Psest_2076 at 2206.440 kb on + strand, within Psest_2076 at 2206.441 kb on - strand, within Psest_2076 at 2206.505 kb on + strand at 2206.505 kb on + strand at 2206.506 kb on - strand at 2206.572 kb on - strand at 2206.590 kb on + strand at 2206.590 kb on + strand at 2206.590 kb on + strand at 2206.590 kb on + strand at 2206.591 kb on - strand at 2206.591 kb on - strand at 2206.607 kb on + strand at 2206.608 kb on - strand at 2206.678 kb on - strand at 2206.858 kb on + strand, within Psest_2077 at 2206.858 kb on + strand, within Psest_2077 at 2206.858 kb on + strand, within Psest_2077 at 2206.859 kb on - strand, within Psest_2077 at 2206.859 kb on - strand, within Psest_2077 at 2206.859 kb on - strand, within Psest_2077 at 2207.080 kb on + strand, within Psest_2077 at 2207.080 kb on + strand, within Psest_2077 at 2207.080 kb on + strand, within Psest_2077 at 2207.081 kb on - strand, within Psest_2077 at 2207.081 kb on - strand, within Psest_2077 at 2207.081 kb on - strand, within Psest_2077 at 2207.081 kb on - strand, within Psest_2077 at 2207.093 kb on + strand, within Psest_2077 at 2207.324 kb on - strand, within Psest_2077 at 2207.359 kb on + strand, within Psest_2077 at 2207.359 kb on + strand, within Psest_2077 at 2207.360 kb on - strand, within Psest_2077 at 2207.360 kb on - strand, within Psest_2077 at 2207.360 kb on - strand, within Psest_2077 at 2207.360 kb on - strand, within Psest_2077 at 2207.360 kb on - strand, within Psest_2077 at 2207.360 kb on - strand, within Psest_2077 at 2207.360 kb on - strand, within Psest_2077 at 2207.360 kb on - strand, within Psest_2077 at 2207.360 kb on - strand, within Psest_2077 at 2207.591 kb on - strand, within Psest_2077 at 2207.604 kb on + strand, within Psest_2077 at 2207.665 kb on - strand, within Psest_2077 at 2207.758 kb on + strand, within Psest_2077 at 2207.758 kb on + strand, within Psest_2077 at 2208.151 kb on + strand at 2208.152 kb on - strand at 2208.152 kb on - strand at 2208.154 kb on + strand at 2208.155 kb on - strand at 2208.227 kb on + strand at 2208.563 kb on - strand, within Psest_2078 at 2208.642 kb on + strand, within Psest_2078 at 2208.642 kb on + strand, within Psest_2078 at 2208.642 kb on + strand, within Psest_2078 at 2208.642 kb on + strand, within Psest_2078 at 2208.643 kb on - strand, within Psest_2078 at 2208.643 kb on - strand, within Psest_2078 at 2208.643 kb on - strand, within Psest_2078 at 2208.643 kb on - strand, within Psest_2078 at 2208.669 kb on + strand, within Psest_2078 at 2208.697 kb on + strand, within Psest_2078 at 2208.841 kb on + strand, within Psest_2078 at 2208.861 kb on + strand, within Psest_2078 at 2208.861 kb on + strand, within Psest_2078 at 2208.861 kb on + strand, within Psest_2078 at 2208.861 kb on + strand, within Psest_2078 at 2208.861 kb on + strand, within Psest_2078 at 2208.861 kb on + strand, within Psest_2078 at 2208.861 kb on + strand, within Psest_2078 at 2208.861 kb on + strand, within Psest_2078 at 2209.033 kb on + strand at 2209.041 kb on + strand at 2209.042 kb on - strand at 2209.224 kb on + strand, within Psest_2079 at 2209.224 kb on + strand, within Psest_2079 at 2209.225 kb on - strand, within Psest_2079 at 2209.225 kb on - strand, within Psest_2079 at 2209.225 kb on - strand, within Psest_2079
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 2,205,608 - -1.1 2,205,654 - -0.7 2,205,655 + -0.4 2,205,656 - -0.5 2,205,656 - -0.8 2,205,656 - -1.5 2,205,656 - -0.4 2,205,656 - -1.7 2,205,656 - -2.0 2,205,656 - -0.3 2,205,656 - -1.2 2,205,735 + -0.9 2,205,735 + -0.5 2,205,736 - +0.4 2,205,752 - -0.7 2,205,843 - Psest_2076 0.14 -0.5 2,206,123 - Psest_2076 0.49 +0.3 2,206,244 + Psest_2076 0.64 +0.1 2,206,245 - Psest_2076 0.64 -1.2 2,206,302 + Psest_2076 0.71 -0.1 2,206,302 + Psest_2076 0.71 -1.4 2,206,303 - Psest_2076 0.71 -1.6 2,206,303 - Psest_2076 0.71 -2.3 2,206,303 - Psest_2076 0.71 +0.3 2,206,303 - Psest_2076 0.71 -1.5 2,206,405 - Psest_2076 0.84 -0.6 2,206,406 + Psest_2076 0.84 -0.9 2,206,406 + Psest_2076 0.84 -1.2 2,206,407 - Psest_2076 0.84 -0.5 2,206,440 + Psest_2076 0.88 -2.3 2,206,440 + Psest_2076 0.88 -0.5 2,206,441 - Psest_2076 0.88 -0.2 2,206,505 + -1.1 2,206,505 + +0.0 2,206,506 - -1.1 2,206,572 - -0.2 2,206,590 + -0.7 2,206,590 + -0.9 2,206,590 + +0.4 2,206,590 + +0.1 2,206,591 - +0.4 2,206,591 - +0.1 2,206,607 + -0.4 2,206,608 - -2.0 2,206,678 - -1.0 2,206,858 + Psest_2077 0.17 -0.6 2,206,858 + Psest_2077 0.17 -2.7 2,206,858 + Psest_2077 0.17 -1.6 2,206,859 - Psest_2077 0.17 -1.4 2,206,859 - Psest_2077 0.17 +0.0 2,206,859 - Psest_2077 0.17 +0.5 2,207,080 + Psest_2077 0.30 -1.3 2,207,080 + Psest_2077 0.30 -0.1 2,207,080 + Psest_2077 0.30 +0.4 2,207,081 - Psest_2077 0.30 -0.5 2,207,081 - Psest_2077 0.30 +1.4 2,207,081 - Psest_2077 0.30 -1.5 2,207,081 - Psest_2077 0.30 +0.6 2,207,093 + Psest_2077 0.31 -0.9 2,207,324 - Psest_2077 0.44 +1.3 2,207,359 + Psest_2077 0.47 -1.4 2,207,359 + Psest_2077 0.47 +0.5 2,207,360 - Psest_2077 0.47 +1.0 2,207,360 - Psest_2077 0.47 +0.2 2,207,360 - Psest_2077 0.47 +0.6 2,207,360 - Psest_2077 0.47 -0.7 2,207,360 - Psest_2077 0.47 -0.9 2,207,360 - Psest_2077 0.47 +0.6 2,207,360 - Psest_2077 0.47 -0.4 2,207,360 - Psest_2077 0.47 -0.6 2,207,360 - Psest_2077 0.47 +0.5 2,207,591 - Psest_2077 0.60 -1.8 2,207,604 + Psest_2077 0.61 -1.1 2,207,665 - Psest_2077 0.65 -0.8 2,207,758 + Psest_2077 0.70 +1.3 2,207,758 + Psest_2077 0.70 -0.6 2,208,151 + -0.8 2,208,152 - -0.3 2,208,152 - -0.3 2,208,154 + -0.7 2,208,155 - -0.5 2,208,227 + -0.4 2,208,563 - Psest_2078 0.37 -1.1 2,208,642 + Psest_2078 0.46 +0.0 2,208,642 + Psest_2078 0.46 +0.6 2,208,642 + Psest_2078 0.46 -0.6 2,208,642 + Psest_2078 0.46 -1.7 2,208,643 - Psest_2078 0.46 -1.2 2,208,643 - Psest_2078 0.46 -0.3 2,208,643 - Psest_2078 0.46 -0.3 2,208,643 - Psest_2078 0.46 -0.7 2,208,669 + Psest_2078 0.49 -0.6 2,208,697 + Psest_2078 0.53 +0.7 2,208,841 + Psest_2078 0.70 -1.7 2,208,861 + Psest_2078 0.73 -0.8 2,208,861 + Psest_2078 0.73 -0.1 2,208,861 + Psest_2078 0.73 -0.5 2,208,861 + Psest_2078 0.73 -1.4 2,208,861 + Psest_2078 0.73 -1.0 2,208,861 + Psest_2078 0.73 +0.0 2,208,861 + Psest_2078 0.73 -0.4 2,208,861 + Psest_2078 0.73 -0.1 2,209,033 + -1.1 2,209,041 + -1.2 2,209,042 - -1.0 2,209,224 + Psest_2079 0.21 -0.2 2,209,224 + Psest_2079 0.21 -0.1 2,209,225 - Psest_2079 0.22 +0.2 2,209,225 - Psest_2079 0.22 -0.7 2,209,225 - Psest_2079 0.22 +0.0
Or see this region's nucleotide sequence