Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2077

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2076 and Psest_2077 are separated by 37 nucleotidesPsest_2077 and Psest_2078 overlap by 1 nucleotidesPsest_2078 and Psest_2079 overlap by 33 nucleotides Psest_2076: Psest_2076 - Enoyl-CoA hydratase/carnithine racemase, at 2,205,726 to 2,206,538 _2076 Psest_2077: Psest_2077 - hypothetical protein, at 2,206,576 to 2,208,258 _2077 Psest_2078: Psest_2078 - NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding, at 2,208,258 to 2,209,088 _2078 Psest_2079: Psest_2079 - Predicted permeases, at 2,209,056 to 2,209,841 _2079 Position (kb) 2206 2207 2208 2209Strain fitness (log2 ratio) -2 -1 0 1at 2205.608 kb on - strandat 2205.654 kb on - strandat 2205.655 kb on + strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.735 kb on + strandat 2205.735 kb on + strandat 2205.736 kb on - strandat 2205.752 kb on - strandat 2205.843 kb on - strand, within Psest_2076at 2206.123 kb on - strand, within Psest_2076at 2206.244 kb on + strand, within Psest_2076at 2206.245 kb on - strand, within Psest_2076at 2206.302 kb on + strand, within Psest_2076at 2206.302 kb on + strand, within Psest_2076at 2206.303 kb on - strand, within Psest_2076at 2206.303 kb on - strand, within Psest_2076at 2206.303 kb on - strand, within Psest_2076at 2206.303 kb on - strand, within Psest_2076at 2206.405 kb on - strand, within Psest_2076at 2206.406 kb on + strand, within Psest_2076at 2206.406 kb on + strand, within Psest_2076at 2206.407 kb on - strand, within Psest_2076at 2206.440 kb on + strand, within Psest_2076at 2206.440 kb on + strand, within Psest_2076at 2206.441 kb on - strand, within Psest_2076at 2206.505 kb on + strandat 2206.505 kb on + strandat 2206.506 kb on - strandat 2206.572 kb on - strandat 2206.590 kb on + strandat 2206.590 kb on + strandat 2206.590 kb on + strandat 2206.590 kb on + strandat 2206.591 kb on - strandat 2206.591 kb on - strandat 2206.607 kb on + strandat 2206.608 kb on - strandat 2206.678 kb on - strandat 2206.858 kb on + strand, within Psest_2077at 2206.858 kb on + strand, within Psest_2077at 2206.858 kb on + strand, within Psest_2077at 2206.859 kb on - strand, within Psest_2077at 2206.859 kb on - strand, within Psest_2077at 2206.859 kb on - strand, within Psest_2077at 2207.080 kb on + strand, within Psest_2077at 2207.080 kb on + strand, within Psest_2077at 2207.080 kb on + strand, within Psest_2077at 2207.081 kb on - strand, within Psest_2077at 2207.081 kb on - strand, within Psest_2077at 2207.081 kb on - strand, within Psest_2077at 2207.081 kb on - strand, within Psest_2077at 2207.093 kb on + strand, within Psest_2077at 2207.324 kb on - strand, within Psest_2077at 2207.359 kb on + strand, within Psest_2077at 2207.359 kb on + strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.591 kb on - strand, within Psest_2077at 2207.604 kb on + strand, within Psest_2077at 2207.665 kb on - strand, within Psest_2077at 2207.758 kb on + strand, within Psest_2077at 2207.758 kb on + strand, within Psest_2077at 2208.151 kb on + strandat 2208.152 kb on - strandat 2208.152 kb on - strandat 2208.154 kb on + strandat 2208.155 kb on - strandat 2208.227 kb on + strandat 2208.563 kb on - strand, within Psest_2078at 2208.642 kb on + strand, within Psest_2078at 2208.642 kb on + strand, within Psest_2078at 2208.642 kb on + strand, within Psest_2078at 2208.642 kb on + strand, within Psest_2078at 2208.643 kb on - strand, within Psest_2078at 2208.643 kb on - strand, within Psest_2078at 2208.643 kb on - strand, within Psest_2078at 2208.643 kb on - strand, within Psest_2078at 2208.669 kb on + strand, within Psest_2078at 2208.697 kb on + strand, within Psest_2078at 2208.841 kb on + strand, within Psest_2078at 2208.861 kb on + strand, within Psest_2078at 2208.861 kb on + strand, within Psest_2078at 2208.861 kb on + strand, within Psest_2078at 2208.861 kb on + strand, within Psest_2078at 2208.861 kb on + strand, within Psest_2078at 2208.861 kb on + strand, within Psest_2078at 2208.861 kb on + strand, within Psest_2078at 2208.861 kb on + strand, within Psest_2078at 2209.033 kb on + strandat 2209.041 kb on + strandat 2209.042 kb on - strandat 2209.224 kb on + strand, within Psest_2079at 2209.224 kb on + strand, within Psest_2079at 2209.225 kb on - strand, within Psest_2079at 2209.225 kb on - strand, within Psest_2079at 2209.225 kb on - strand, within Psest_2079

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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2,205,608 - -1.1
2,205,654 - -0.7
2,205,655 + -0.4
2,205,656 - -0.5
2,205,656 - -0.8
2,205,656 - -1.5
2,205,656 - -0.4
2,205,656 - -1.7
2,205,656 - -2.0
2,205,656 - -0.3
2,205,656 - -1.2
2,205,735 + -0.9
2,205,735 + -0.5
2,205,736 - +0.4
2,205,752 - -0.7
2,205,843 - Psest_2076 0.14 -0.5
2,206,123 - Psest_2076 0.49 +0.3
2,206,244 + Psest_2076 0.64 +0.1
2,206,245 - Psest_2076 0.64 -1.2
2,206,302 + Psest_2076 0.71 -0.1
2,206,302 + Psest_2076 0.71 -1.4
2,206,303 - Psest_2076 0.71 -1.6
2,206,303 - Psest_2076 0.71 -2.3
2,206,303 - Psest_2076 0.71 +0.3
2,206,303 - Psest_2076 0.71 -1.5
2,206,405 - Psest_2076 0.84 -0.6
2,206,406 + Psest_2076 0.84 -0.9
2,206,406 + Psest_2076 0.84 -1.2
2,206,407 - Psest_2076 0.84 -0.5
2,206,440 + Psest_2076 0.88 -2.3
2,206,440 + Psest_2076 0.88 -0.5
2,206,441 - Psest_2076 0.88 -0.2
2,206,505 + -1.1
2,206,505 + +0.0
2,206,506 - -1.1
2,206,572 - -0.2
2,206,590 + -0.7
2,206,590 + -0.9
2,206,590 + +0.4
2,206,590 + +0.1
2,206,591 - +0.4
2,206,591 - +0.1
2,206,607 + -0.4
2,206,608 - -2.0
2,206,678 - -1.0
2,206,858 + Psest_2077 0.17 -0.6
2,206,858 + Psest_2077 0.17 -2.7
2,206,858 + Psest_2077 0.17 -1.6
2,206,859 - Psest_2077 0.17 -1.4
2,206,859 - Psest_2077 0.17 +0.0
2,206,859 - Psest_2077 0.17 +0.5
2,207,080 + Psest_2077 0.30 -1.3
2,207,080 + Psest_2077 0.30 -0.1
2,207,080 + Psest_2077 0.30 +0.4
2,207,081 - Psest_2077 0.30 -0.5
2,207,081 - Psest_2077 0.30 +1.4
2,207,081 - Psest_2077 0.30 -1.5
2,207,081 - Psest_2077 0.30 +0.6
2,207,093 + Psest_2077 0.31 -0.9
2,207,324 - Psest_2077 0.44 +1.3
2,207,359 + Psest_2077 0.47 -1.4
2,207,359 + Psest_2077 0.47 +0.5
2,207,360 - Psest_2077 0.47 +1.0
2,207,360 - Psest_2077 0.47 +0.2
2,207,360 - Psest_2077 0.47 +0.6
2,207,360 - Psest_2077 0.47 -0.7
2,207,360 - Psest_2077 0.47 -0.9
2,207,360 - Psest_2077 0.47 +0.6
2,207,360 - Psest_2077 0.47 -0.4
2,207,360 - Psest_2077 0.47 -0.6
2,207,360 - Psest_2077 0.47 +0.5
2,207,591 - Psest_2077 0.60 -1.8
2,207,604 + Psest_2077 0.61 -1.1
2,207,665 - Psest_2077 0.65 -0.8
2,207,758 + Psest_2077 0.70 +1.3
2,207,758 + Psest_2077 0.70 -0.6
2,208,151 + -0.8
2,208,152 - -0.3
2,208,152 - -0.3
2,208,154 + -0.7
2,208,155 - -0.5
2,208,227 + -0.4
2,208,563 - Psest_2078 0.37 -1.1
2,208,642 + Psest_2078 0.46 +0.0
2,208,642 + Psest_2078 0.46 +0.6
2,208,642 + Psest_2078 0.46 -0.6
2,208,642 + Psest_2078 0.46 -1.7
2,208,643 - Psest_2078 0.46 -1.2
2,208,643 - Psest_2078 0.46 -0.3
2,208,643 - Psest_2078 0.46 -0.3
2,208,643 - Psest_2078 0.46 -0.7
2,208,669 + Psest_2078 0.49 -0.6
2,208,697 + Psest_2078 0.53 +0.7
2,208,841 + Psest_2078 0.70 -1.7
2,208,861 + Psest_2078 0.73 -0.8
2,208,861 + Psest_2078 0.73 -0.1
2,208,861 + Psest_2078 0.73 -0.5
2,208,861 + Psest_2078 0.73 -1.4
2,208,861 + Psest_2078 0.73 -1.0
2,208,861 + Psest_2078 0.73 +0.0
2,208,861 + Psest_2078 0.73 -0.4
2,208,861 + Psest_2078 0.73 -0.1
2,209,033 + -1.1
2,209,041 + -1.2
2,209,042 - -1.0
2,209,224 + Psest_2079 0.21 -0.2
2,209,224 + Psest_2079 0.21 -0.1
2,209,225 - Psest_2079 0.22 +0.2
2,209,225 - Psest_2079 0.22 -0.7
2,209,225 - Psest_2079 0.22 +0.0

Or see this region's nucleotide sequence