Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0152 and Psest_0153 overlap by 1 nucleotides Psest_0153 and Psest_0154 are separated by 0 nucleotides Psest_0154 and Psest_0155 are separated by 36 nucleotides Psest_0155 and Psest_0156 are separated by 98 nucleotides Psest_0156 and Psest_0157 are separated by 86 nucleotides
Psest_0152: Psest_0152 - Imidazoleglycerol-phosphate dehydratase, at 152,099 to 152,692
_0152
Psest_0153: Psest_0153 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 152,692 to 153,330
_0153
Psest_0154: Psest_0154 - Uncharacterized conserved protein, at 153,331 to 153,591
_0154
Psest_0155: Psest_0155 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 153,628 to 154,371
_0155
Psest_0156: Psest_0156 - imidazoleglycerol phosphate synthase, cyclase subunit, at 154,470 to 155,240
_0156
Psest_0157: Psest_0157 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 155,327 to 156,076
_0157
Position (kb) 153
154
155 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 152.690 kb on + strand at 152.691 kb on - strand at 153.139 kb on + strand, within Psest_0153 at 153.139 kb on + strand, within Psest_0153 at 153.139 kb on + strand, within Psest_0153 at 153.139 kb on + strand, within Psest_0153 at 153.139 kb on + strand, within Psest_0153 at 153.140 kb on - strand, within Psest_0153 at 153.140 kb on - strand, within Psest_0153 at 153.140 kb on - strand, within Psest_0153 at 153.154 kb on + strand, within Psest_0153 at 153.154 kb on + strand, within Psest_0153 at 153.154 kb on + strand, within Psest_0153 at 153.154 kb on + strand, within Psest_0153 at 153.154 kb on + strand, within Psest_0153 at 153.154 kb on + strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.155 kb on - strand, within Psest_0153 at 153.157 kb on + strand, within Psest_0153 at 153.157 kb on + strand, within Psest_0153 at 153.157 kb on + strand, within Psest_0153 at 153.157 kb on + strand, within Psest_0153 at 153.157 kb on + strand, within Psest_0153 at 153.157 kb on + strand, within Psest_0153 at 153.157 kb on + strand, within Psest_0153 at 153.157 kb on + strand, within Psest_0153 at 153.158 kb on - strand, within Psest_0153 at 153.158 kb on - strand, within Psest_0153 at 153.158 kb on - strand, within Psest_0153 at 153.158 kb on - strand, within Psest_0153 at 153.158 kb on - strand, within Psest_0153 at 153.158 kb on - strand, within Psest_0153 at 153.158 kb on - strand, within Psest_0153 at 153.158 kb on - strand, within Psest_0153 at 153.328 kb on + strand at 153.328 kb on + strand at 153.329 kb on - strand at 153.329 kb on - strand at 153.329 kb on - strand at 153.499 kb on + strand, within Psest_0154 at 153.499 kb on + strand, within Psest_0154 at 153.499 kb on + strand, within Psest_0154 at 153.500 kb on - strand, within Psest_0154 at 153.502 kb on + strand, within Psest_0154 at 153.502 kb on + strand, within Psest_0154 at 153.502 kb on + strand, within Psest_0154 at 153.502 kb on + strand, within Psest_0154 at 153.502 kb on + strand, within Psest_0154 at 153.502 kb on + strand, within Psest_0154 at 153.502 kb on + strand, within Psest_0154 at 153.502 kb on + strand, within Psest_0154 at 153.502 kb on + strand, within Psest_0154 at 153.502 kb on + strand, within Psest_0154 at 153.503 kb on - strand, within Psest_0154 at 153.503 kb on - strand, within Psest_0154 at 153.503 kb on - strand, within Psest_0154 at 153.503 kb on - strand, within Psest_0154 at 153.503 kb on - strand, within Psest_0154 at 153.503 kb on - strand, within Psest_0154 at 153.904 kb on + strand, within Psest_0155 at 153.904 kb on + strand, within Psest_0155 at 153.904 kb on + strand, within Psest_0155 at 153.905 kb on - strand, within Psest_0155 at 153.905 kb on - strand, within Psest_0155 at 153.925 kb on + strand, within Psest_0155 at 153.925 kb on + strand, within Psest_0155 at 153.925 kb on + strand, within Psest_0155 at 153.925 kb on + strand, within Psest_0155 at 153.925 kb on + strand, within Psest_0155 at 153.925 kb on + strand, within Psest_0155 at 153.926 kb on - strand, within Psest_0155 at 153.926 kb on - strand, within Psest_0155 at 153.926 kb on - strand, within Psest_0155 at 154.123 kb on + strand, within Psest_0155 at 154.306 kb on + strand at 154.306 kb on + strand at 154.306 kb on + strand at 154.307 kb on - strand at 154.307 kb on - strand at 154.357 kb on + strand at 154.357 kb on + strand at 154.357 kb on + strand at 154.357 kb on + strand at 154.357 kb on + strand at 154.358 kb on - strand at 154.412 kb on + strand at 154.412 kb on + strand at 154.412 kb on + strand at 154.419 kb on + strand at 154.419 kb on + strand at 154.419 kb on + strand at 154.419 kb on + strand at 154.419 kb on + strand at 154.420 kb on - strand at 154.420 kb on - strand at 154.420 kb on - strand at 154.420 kb on - strand at 154.420 kb on - strand at 154.670 kb on - strand, within Psest_0156 at 155.184 kb on + strand at 155.184 kb on + strand at 155.184 kb on + strand at 155.185 kb on - strand at 155.185 kb on - strand at 155.185 kb on - strand at 155.185 kb on - strand at 155.208 kb on + strand at 155.209 kb on - strand at 155.266 kb on + strand at 155.267 kb on - strand at 155.267 kb on - strand at 155.277 kb on + strand at 155.277 kb on + strand at 155.277 kb on + strand at 155.277 kb on + strand at 155.277 kb on + strand at 155.278 kb on - strand at 155.278 kb on - strand at 155.278 kb on - strand at 155.278 kb on - strand at 155.278 kb on - strand at 155.278 kb on - strand at 155.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 152,690 + -1.7 152,691 - -2.7 153,139 + Psest_0153 0.70 -3.5 153,139 + Psest_0153 0.70 -0.9 153,139 + Psest_0153 0.70 -2.2 153,139 + Psest_0153 0.70 -2.9 153,139 + Psest_0153 0.70 -2.4 153,140 - Psest_0153 0.70 -3.2 153,140 - Psest_0153 0.70 -3.2 153,140 - Psest_0153 0.70 -0.6 153,154 + Psest_0153 0.72 -2.1 153,154 + Psest_0153 0.72 -2.8 153,154 + Psest_0153 0.72 -5.6 153,154 + Psest_0153 0.72 -1.9 153,154 + Psest_0153 0.72 -3.2 153,154 + Psest_0153 0.72 -1.3 153,155 - Psest_0153 0.72 -3.5 153,155 - Psest_0153 0.72 -2.3 153,155 - Psest_0153 0.72 -2.5 153,155 - Psest_0153 0.72 -2.8 153,155 - Psest_0153 0.72 -3.6 153,155 - Psest_0153 0.72 -5.1 153,155 - Psest_0153 0.72 -2.8 153,155 - Psest_0153 0.72 -5.6 153,155 - Psest_0153 0.72 +0.8 153,155 - Psest_0153 0.72 -3.6 153,155 - Psest_0153 0.72 -1.8 153,155 - Psest_0153 0.72 -2.4 153,157 + Psest_0153 0.73 -1.4 153,157 + Psest_0153 0.73 -2.1 153,157 + Psest_0153 0.73 -2.6 153,157 + Psest_0153 0.73 -1.4 153,157 + Psest_0153 0.73 -2.7 153,157 + Psest_0153 0.73 -3.3 153,157 + Psest_0153 0.73 -2.7 153,157 + Psest_0153 0.73 -1.1 153,158 - Psest_0153 0.73 -1.4 153,158 - Psest_0153 0.73 -2.1 153,158 - Psest_0153 0.73 -2.7 153,158 - Psest_0153 0.73 -2.2 153,158 - Psest_0153 0.73 -2.8 153,158 - Psest_0153 0.73 -2.9 153,158 - Psest_0153 0.73 -5.3 153,158 - Psest_0153 0.73 -2.4 153,328 + +0.8 153,328 + +0.3 153,329 - -3.0 153,329 - -2.0 153,329 - -1.3 153,499 + Psest_0154 0.64 -0.7 153,499 + Psest_0154 0.64 +0.3 153,499 + Psest_0154 0.64 -0.3 153,500 - Psest_0154 0.65 -2.5 153,502 + Psest_0154 0.66 -0.2 153,502 + Psest_0154 0.66 +0.8 153,502 + Psest_0154 0.66 +0.1 153,502 + Psest_0154 0.66 -0.3 153,502 + Psest_0154 0.66 +1.2 153,502 + Psest_0154 0.66 +0.4 153,502 + Psest_0154 0.66 +1.1 153,502 + Psest_0154 0.66 +1.0 153,502 + Psest_0154 0.66 +1.2 153,502 + Psest_0154 0.66 +1.4 153,503 - Psest_0154 0.66 -4.3 153,503 - Psest_0154 0.66 -2.7 153,503 - Psest_0154 0.66 -3.4 153,503 - Psest_0154 0.66 -2.8 153,503 - Psest_0154 0.66 -4.1 153,503 - Psest_0154 0.66 -1.8 153,904 + Psest_0155 0.37 -2.2 153,904 + Psest_0155 0.37 -2.9 153,904 + Psest_0155 0.37 -2.5 153,905 - Psest_0155 0.37 -1.0 153,905 - Psest_0155 0.37 -4.0 153,925 + Psest_0155 0.40 -0.8 153,925 + Psest_0155 0.40 -3.3 153,925 + Psest_0155 0.40 -3.6 153,925 + Psest_0155 0.40 -2.3 153,925 + Psest_0155 0.40 -2.4 153,925 + Psest_0155 0.40 -1.9 153,926 - Psest_0155 0.40 -3.6 153,926 - Psest_0155 0.40 -2.3 153,926 - Psest_0155 0.40 -3.2 154,123 + Psest_0155 0.67 -1.2 154,306 + -2.6 154,306 + -2.5 154,306 + -4.4 154,307 - -1.3 154,307 - -2.5 154,357 + +0.0 154,357 + +0.4 154,357 + -0.4 154,357 + -0.2 154,357 + +1.8 154,358 - -0.6 154,412 + -0.9 154,412 + +0.3 154,412 + -0.4 154,419 + +0.3 154,419 + +0.4 154,419 + -0.0 154,419 + -0.1 154,419 + +0.1 154,420 - -4.2 154,420 - +0.4 154,420 - -1.0 154,420 - -2.9 154,420 - -3.0 154,670 - Psest_0156 0.26 -1.8 155,184 + -2.9 155,184 + -3.2 155,184 + -2.4 155,185 - -0.8 155,185 - -3.0 155,185 - -2.1 155,185 - -1.6 155,208 + -2.3 155,209 - -2.6 155,266 + +0.9 155,267 - +0.6 155,267 - +0.2 155,277 + -0.0 155,277 + +2.0 155,277 + +0.2 155,277 + -0.4 155,277 + +1.1 155,278 - -0.5 155,278 - +0.1 155,278 - -1.3 155,278 - +0.1 155,278 - -0.4 155,278 - -2.4 155,368 - -0.6
Or see this region's nucleotide sequence