Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1558 and Psest_1559 are separated by 144 nucleotides Psest_1559 and Psest_1560 are separated by 64 nucleotides Psest_1560 and Psest_1561 are separated by 11 nucleotides
Psest_1558: Psest_1558 - adenylate kinases, at 1,659,597 to 1,660,244
_1558
Psest_1559: Psest_1559 - universal bacterial protein YeaZ, at 1,660,389 to 1,661,066
_1559
Psest_1560: Psest_1560 - hypothetical protein, at 1,661,131 to 1,661,475
_1560
Psest_1561: Psest_1561 - Uncharacterized conserved protein, at 1,661,487 to 1,662,347
_1561
Position (kb)
1660
1661
1662 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1659.427 kb on + strand at 1659.427 kb on + strand at 1659.428 kb on - strand at 1659.428 kb on - strand at 1659.428 kb on - strand at 1659.576 kb on + strand at 1660.354 kb on - strand at 1660.394 kb on + strand at 1660.394 kb on + strand at 1661.100 kb on - strand at 1661.206 kb on + strand, within Psest_1560 at 1661.206 kb on + strand, within Psest_1560 at 1661.269 kb on + strand, within Psest_1560 at 1661.270 kb on - strand, within Psest_1560 at 1661.270 kb on - strand, within Psest_1560 at 1661.404 kb on + strand, within Psest_1560 at 1661.404 kb on + strand, within Psest_1560 at 1661.404 kb on + strand, within Psest_1560 at 1661.404 kb on + strand, within Psest_1560 at 1661.405 kb on - strand, within Psest_1560 at 1661.467 kb on + strand at 1661.468 kb on - strand at 1661.502 kb on + strand at 1661.502 kb on + strand at 1661.506 kb on - strand at 1661.592 kb on + strand, within Psest_1561 at 1661.592 kb on + strand, within Psest_1561 at 1661.592 kb on + strand, within Psest_1561 at 1661.592 kb on + strand, within Psest_1561 at 1661.592 kb on + strand, within Psest_1561 at 1661.592 kb on + strand, within Psest_1561 at 1661.592 kb on + strand, within Psest_1561 at 1661.592 kb on + strand, within Psest_1561 at 1661.592 kb on + strand, within Psest_1561 at 1661.592 kb on + strand, within Psest_1561 at 1661.592 kb on + strand, within Psest_1561 at 1661.593 kb on - strand, within Psest_1561 at 1661.634 kb on + strand, within Psest_1561 at 1661.634 kb on + strand, within Psest_1561 at 1661.634 kb on + strand, within Psest_1561 at 1661.634 kb on + strand, within Psest_1561 at 1661.634 kb on + strand, within Psest_1561 at 1661.634 kb on + strand, within Psest_1561 at 1661.634 kb on + strand, within Psest_1561 at 1661.635 kb on - strand, within Psest_1561 at 1661.635 kb on - strand, within Psest_1561 at 1661.871 kb on - strand, within Psest_1561
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 1,659,427 + -0.3 1,659,427 + +0.1 1,659,428 - -0.2 1,659,428 - +1.4 1,659,428 - +0.9 1,659,576 + +1.6 1,660,354 - +1.9 1,660,394 + -0.3 1,660,394 + +1.4 1,661,100 - +0.5 1,661,206 + Psest_1560 0.22 -0.4 1,661,206 + Psest_1560 0.22 +0.5 1,661,269 + Psest_1560 0.40 -1.0 1,661,270 - Psest_1560 0.40 +0.8 1,661,270 - Psest_1560 0.40 +1.8 1,661,404 + Psest_1560 0.79 -1.2 1,661,404 + Psest_1560 0.79 -0.1 1,661,404 + Psest_1560 0.79 -1.5 1,661,404 + Psest_1560 0.79 +0.3 1,661,405 - Psest_1560 0.79 +0.2 1,661,467 + -0.4 1,661,468 - +0.6 1,661,502 + +0.1 1,661,502 + +0.5 1,661,506 - -0.5 1,661,592 + Psest_1561 0.12 +1.5 1,661,592 + Psest_1561 0.12 +1.0 1,661,592 + Psest_1561 0.12 -0.7 1,661,592 + Psest_1561 0.12 -0.8 1,661,592 + Psest_1561 0.12 +1.0 1,661,592 + Psest_1561 0.12 +1.0 1,661,592 + Psest_1561 0.12 +1.3 1,661,592 + Psest_1561 0.12 -0.6 1,661,592 + Psest_1561 0.12 -0.4 1,661,592 + Psest_1561 0.12 +0.4 1,661,592 + Psest_1561 0.12 -0.4 1,661,593 - Psest_1561 0.12 +0.8 1,661,634 + Psest_1561 0.17 +0.2 1,661,634 + Psest_1561 0.17 +1.6 1,661,634 + Psest_1561 0.17 +0.8 1,661,634 + Psest_1561 0.17 +1.0 1,661,634 + Psest_1561 0.17 +2.2 1,661,634 + Psest_1561 0.17 +3.1 1,661,634 + Psest_1561 0.17 +1.4 1,661,635 - Psest_1561 0.17 +0.0 1,661,635 - Psest_1561 0.17 +2.0 1,661,871 - Psest_1561 0.45 -1.0
Or see this region's nucleotide sequence