Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1556

Experiment: Def Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Def Carbenicillin 0.008 mg/ml
1,655,159	+		Psest_1554	0.69	-1.5
1,655,159	+		Psest_1554	0.69	-0.9
1,655,201	+		Psest_1554	0.75	+0.3
1,655,202	-		Psest_1554	0.75	+0.1
1,655,202	-		Psest_1554	0.75	+0.4
1,655,373	+				-1.2
1,655,373	+				+0.2
1,655,373	+				+0.2
1,655,373	+				-0.2
1,655,373	+				-1.4
1,655,373	+				-0.6
1,655,374	-				-1.0
1,655,377	+				-0.4
1,655,377	+				-1.1
1,655,377	+				-0.5
1,655,377	+				-1.6
1,655,377	+				+0.1
1,655,377	+				-1.6
1,655,411	+				-1.1
1,655,411	+				-1.8
1,655,411	+				-0.7
1,655,412	-				-0.7
1,655,418	-				+0.0
1,655,419	+				-0.7
1,655,419	+				-0.6
1,655,420	-				-0.2
1,655,420	-				+1.9
1,655,420	-				-0.4
1,655,461	+				-4.6
1,655,461	+				-0.9
1,655,461	+				-1.5
1,655,461	+				+0.4
1,655,461	+				-1.1
1,655,461	+				-0.8
1,655,462	-				-0.2
1,655,595	+		Psest_1555	0.38	-0.6
1,655,861	+				-1.0
1,655,898	+				-0.2
1,655,899	-				-0.9
1,655,972	+				-1.9
1,655,972	+				-1.3
1,656,324	+		Psest_1556	0.60	-1.2
1,656,395	+		Psest_1556	0.81	-0.2
1,656,395	+		Psest_1556	0.81	+0.3
1,656,395	+		Psest_1556	0.81	-0.4
1,656,396	-		Psest_1556	0.81	-1.9
1,656,396	-		Psest_1556	0.81	-0.6
1,656,396	-		Psest_1556	0.81	+0.1
1,656,396	-		Psest_1556	0.81	-1.4
1,656,466	+				-1.0
1,656,467	-				-2.5
1,656,467	-				-1.6
1,656,467	-				+0.7
1,656,467	-				-0.5
1,656,504	-				-0.1
1,656,582	+				-0.8
1,656,582	+				-0.6
1,656,653	+				-0.8
1,656,654	-				-0.8
1,656,654	-				+0.4
1,656,654	-				+1.3
1,656,750	+				+1.2
1,656,750	+				-0.1
1,656,750	+				+1.3
1,656,750	+				-1.5
1,656,750	+				-1.2
1,656,751	-				+0.5
1,656,751	-				-0.4
1,656,751	-				-0.1
1,656,751	-				-1.6
1,656,751	-				-0.2
1,656,751	-				+0.1
1,656,751	-				-0.7
1,656,751	-				+1.1
1,656,751	-				+0.0
1,656,965	-				-0.1
1,656,977	+		Psest_1557	0.10	+0.1
1,656,978	-		Psest_1557	0.10	-0.2
1,657,172	+		Psest_1557	0.17	-0.6
1,657,173	-		Psest_1557	0.17	+0.7
1,657,173	-		Psest_1557	0.17	+0.3
1,657,429	-		Psest_1557	0.27	+0.5