Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1509

Experiment: Def Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1508 and Psest_1509 are separated by 244 nucleotidesPsest_1509 and Psest_1510 are separated by 41 nucleotides Psest_1508: Psest_1508 - succinate CoA transferases, at 1,606,996 to 1,608,492 _1508 Psest_1509: Psest_1509 - quinolinate synthetase complex, A subunit, at 1,608,737 to 1,609,795 _1509 Psest_1510: Psest_1510 - Putative Zn-dependent protease, contains TPR repeats, at 1,609,837 to 1,611,267 _1510 Position (kb) 1608 1609 1610Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1607.851 kb on + strand, within Psest_1508at 1607.851 kb on + strand, within Psest_1508at 1607.851 kb on + strand, within Psest_1508at 1607.851 kb on + strand, within Psest_1508at 1607.852 kb on - strand, within Psest_1508at 1607.957 kb on + strand, within Psest_1508at 1607.977 kb on + strand, within Psest_1508at 1607.977 kb on + strand, within Psest_1508at 1607.977 kb on + strand, within Psest_1508at 1607.977 kb on + strand, within Psest_1508at 1607.977 kb on + strand, within Psest_1508at 1607.978 kb on - strand, within Psest_1508at 1607.978 kb on - strand, within Psest_1508at 1607.978 kb on - strand, within Psest_1508at 1607.978 kb on - strand, within Psest_1508at 1607.978 kb on - strand, within Psest_1508at 1607.978 kb on - strand, within Psest_1508at 1607.978 kb on - strand, within Psest_1508at 1607.978 kb on - strand, within Psest_1508at 1608.082 kb on + strand, within Psest_1508at 1608.082 kb on + strand, within Psest_1508at 1608.082 kb on + strand, within Psest_1508at 1608.082 kb on + strand, within Psest_1508at 1608.083 kb on - strand, within Psest_1508at 1608.083 kb on - strand, within Psest_1508at 1608.083 kb on - strand, within Psest_1508at 1608.382 kb on + strandat 1608.382 kb on + strandat 1608.382 kb on + strandat 1608.383 kb on - strandat 1608.532 kb on + strandat 1608.598 kb on - strandat 1608.600 kb on + strandat 1608.600 kb on + strandat 1608.691 kb on + strandat 1608.748 kb on - strandat 1608.882 kb on - strand, within Psest_1509at 1608.882 kb on - strand, within Psest_1509at 1608.882 kb on - strand, within Psest_1509at 1608.882 kb on - strand, within Psest_1509at 1608.884 kb on + strand, within Psest_1509at 1608.885 kb on - strand, within Psest_1509at 1608.885 kb on - strand, within Psest_1509at 1608.885 kb on - strand, within Psest_1509at 1609.154 kb on + strand, within Psest_1509at 1609.155 kb on - strand, within Psest_1509at 1609.155 kb on - strand, within Psest_1509at 1609.155 kb on - strand, within Psest_1509at 1609.289 kb on + strand, within Psest_1509at 1609.289 kb on + strand, within Psest_1509at 1609.289 kb on + strand, within Psest_1509at 1609.290 kb on - strand, within Psest_1509at 1609.290 kb on - strand, within Psest_1509at 1609.290 kb on - strand, within Psest_1509at 1609.541 kb on + strand, within Psest_1509at 1609.541 kb on + strand, within Psest_1509at 1609.541 kb on + strand, within Psest_1509at 1609.541 kb on + strand, within Psest_1509at 1609.542 kb on - strand, within Psest_1509at 1609.542 kb on - strand, within Psest_1509at 1609.967 kb on + strandat 1609.989 kb on - strand, within Psest_1510at 1609.989 kb on - strand, within Psest_1510at 1610.140 kb on + strand, within Psest_1510at 1610.141 kb on - strand, within Psest_1510at 1610.141 kb on - strand, within Psest_1510at 1610.141 kb on - strand, within Psest_1510at 1610.141 kb on - strand, within Psest_1510at 1610.169 kb on - strand, within Psest_1510at 1610.264 kb on + strand, within Psest_1510at 1610.264 kb on + strand, within Psest_1510at 1610.264 kb on + strand, within Psest_1510at 1610.264 kb on + strand, within Psest_1510at 1610.265 kb on - strand, within Psest_1510at 1610.265 kb on - strand, within Psest_1510

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml
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1,607,851 + Psest_1508 0.57 -0.5
1,607,851 + Psest_1508 0.57 -0.5
1,607,851 + Psest_1508 0.57 -0.4
1,607,851 + Psest_1508 0.57 +0.1
1,607,852 - Psest_1508 0.57 +0.5
1,607,957 + Psest_1508 0.64 +0.5
1,607,977 + Psest_1508 0.66 +0.1
1,607,977 + Psest_1508 0.66 +0.9
1,607,977 + Psest_1508 0.66 +0.7
1,607,977 + Psest_1508 0.66 +0.4
1,607,977 + Psest_1508 0.66 +0.5
1,607,978 - Psest_1508 0.66 -0.4
1,607,978 - Psest_1508 0.66 -0.4
1,607,978 - Psest_1508 0.66 -2.1
1,607,978 - Psest_1508 0.66 +0.5
1,607,978 - Psest_1508 0.66 -0.4
1,607,978 - Psest_1508 0.66 +0.3
1,607,978 - Psest_1508 0.66 -2.4
1,607,978 - Psest_1508 0.66 -0.9
1,608,082 + Psest_1508 0.73 +1.4
1,608,082 + Psest_1508 0.73 -0.2
1,608,082 + Psest_1508 0.73 +0.7
1,608,082 + Psest_1508 0.73 -0.2
1,608,083 - Psest_1508 0.73 -0.3
1,608,083 - Psest_1508 0.73 -2.0
1,608,083 - Psest_1508 0.73 -0.2
1,608,382 + +1.0
1,608,382 + +1.1
1,608,382 + +0.8
1,608,383 - -1.3
1,608,532 + -1.3
1,608,598 - -0.0
1,608,600 + -2.7
1,608,600 + -1.1
1,608,691 + -0.8
1,608,748 - -1.5
1,608,882 - Psest_1509 0.14 -0.9
1,608,882 - Psest_1509 0.14 -1.4
1,608,882 - Psest_1509 0.14 -2.3
1,608,882 - Psest_1509 0.14 -1.8
1,608,884 + Psest_1509 0.14 -3.2
1,608,885 - Psest_1509 0.14 -2.2
1,608,885 - Psest_1509 0.14 -3.4
1,608,885 - Psest_1509 0.14 -2.5
1,609,154 + Psest_1509 0.39 -2.7
1,609,155 - Psest_1509 0.39 -3.0
1,609,155 - Psest_1509 0.39 -2.1
1,609,155 - Psest_1509 0.39 +0.6
1,609,289 + Psest_1509 0.52 -2.5
1,609,289 + Psest_1509 0.52 -2.2
1,609,289 + Psest_1509 0.52 -4.9
1,609,290 - Psest_1509 0.52 -1.1
1,609,290 - Psest_1509 0.52 -2.9
1,609,290 - Psest_1509 0.52 -0.6
1,609,541 + Psest_1509 0.76 +0.4
1,609,541 + Psest_1509 0.76 -2.3
1,609,541 + Psest_1509 0.76 -3.0
1,609,541 + Psest_1509 0.76 -0.9
1,609,542 - Psest_1509 0.76 -2.8
1,609,542 - Psest_1509 0.76 -2.7
1,609,967 + -2.3
1,609,989 - Psest_1510 0.11 -2.6
1,609,989 - Psest_1510 0.11 -1.0
1,610,140 + Psest_1510 0.21 -0.9
1,610,141 - Psest_1510 0.21 -0.0
1,610,141 - Psest_1510 0.21 -2.2
1,610,141 - Psest_1510 0.21 -0.3
1,610,141 - Psest_1510 0.21 -0.3
1,610,169 - Psest_1510 0.23 -1.4
1,610,264 + Psest_1510 0.30 -0.5
1,610,264 + Psest_1510 0.30 -0.0
1,610,264 + Psest_1510 0.30 -0.5
1,610,264 + Psest_1510 0.30 -1.0
1,610,265 - Psest_1510 0.30 -3.0
1,610,265 - Psest_1510 0.30 -1.7

Or see this region's nucleotide sequence