Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1490 and Psest_1491 are separated by 48 nucleotides Psest_1491 and Psest_1492 are separated by 265 nucleotides Psest_1492 and Psest_1493 are separated by 345 nucleotides
Psest_1490: Psest_1490 - Uncharacterized protein conserved in bacteria, at 1,592,777 to 1,592,983
_1490
Psest_1491: Psest_1491 - Cold shock proteins, at 1,593,032 to 1,593,646
_1491
Psest_1492: Psest_1492 - DNA-binding ferritin-like protein (oxidative damage protectant), at 1,593,912 to 1,594,382
_1492
Psest_1493: Psest_1493 - aspartyl-tRNA synthetase, bacterial type, at 1,594,728 to 1,596,503
_1493
Position (kb)
1593
1594
1595 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1592.978 kb on + strand at 1592.978 kb on + strand at 1593.193 kb on + strand, within Psest_1491 at 1593.413 kb on - strand, within Psest_1491 at 1593.486 kb on - strand, within Psest_1491 at 1593.486 kb on - strand, within Psest_1491 at 1593.602 kb on + strand at 1593.653 kb on - strand at 1593.653 kb on - strand at 1593.653 kb on - strand at 1593.653 kb on - strand at 1593.653 kb on - strand at 1593.773 kb on + strand at 1593.773 kb on + strand at 1593.774 kb on - strand at 1593.777 kb on + strand at 1593.777 kb on + strand at 1593.778 kb on - strand at 1593.783 kb on + strand at 1593.783 kb on + strand at 1593.783 kb on + strand at 1593.783 kb on + strand at 1593.832 kb on + strand at 1593.832 kb on + strand at 1593.832 kb on + strand at 1593.839 kb on + strand at 1593.839 kb on + strand at 1593.839 kb on + strand at 1593.839 kb on + strand at 1593.857 kb on + strand at 1594.141 kb on + strand, within Psest_1492 at 1594.141 kb on + strand, within Psest_1492 at 1594.141 kb on + strand, within Psest_1492 at 1594.141 kb on + strand, within Psest_1492 at 1594.142 kb on - strand, within Psest_1492 at 1594.142 kb on - strand, within Psest_1492 at 1594.216 kb on + strand, within Psest_1492 at 1594.235 kb on + strand, within Psest_1492 at 1594.235 kb on + strand, within Psest_1492 at 1594.236 kb on - strand, within Psest_1492 at 1594.294 kb on + strand, within Psest_1492 at 1594.295 kb on - strand, within Psest_1492 at 1594.295 kb on - strand, within Psest_1492 at 1594.295 kb on - strand, within Psest_1492 at 1594.295 kb on - strand, within Psest_1492 at 1594.301 kb on + strand, within Psest_1492 at 1594.301 kb on + strand, within Psest_1492 at 1594.302 kb on - strand, within Psest_1492 at 1594.302 kb on - strand, within Psest_1492 at 1594.302 kb on - strand, within Psest_1492 at 1594.302 kb on - strand, within Psest_1492 at 1594.302 kb on - strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.303 kb on + strand, within Psest_1492 at 1594.304 kb on - strand, within Psest_1492 at 1594.304 kb on - strand, within Psest_1492 at 1594.304 kb on - strand, within Psest_1492 at 1594.304 kb on - strand, within Psest_1492 at 1594.304 kb on - strand, within Psest_1492 at 1594.304 kb on - strand, within Psest_1492 at 1594.304 kb on - strand, within Psest_1492 at 1594.304 kb on - strand, within Psest_1492 at 1594.304 kb on - strand, within Psest_1492 at 1594.304 kb on - strand, within Psest_1492 at 1594.412 kb on + strand at 1594.412 kb on + strand at 1594.412 kb on + strand at 1594.412 kb on + strand at 1594.412 kb on + strand at 1594.412 kb on + strand at 1594.413 kb on - strand at 1594.413 kb on - strand at 1594.413 kb on - strand at 1594.413 kb on - strand at 1594.413 kb on - strand at 1594.413 kb on - strand at 1594.413 kb on - strand at 1594.416 kb on + strand at 1594.417 kb on - strand at 1594.417 kb on - strand at 1594.417 kb on - strand at 1594.417 kb on - strand at 1594.548 kb on + strand at 1594.548 kb on + strand at 1594.548 kb on + strand at 1594.552 kb on + strand at 1594.552 kb on + strand at 1594.552 kb on + strand at 1594.560 kb on + strand at 1594.560 kb on + strand at 1594.560 kb on + strand at 1594.560 kb on + strand at 1594.560 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 1,592,978 + -0.1 1,592,978 + +1.5 1,593,193 + Psest_1491 0.26 +0.5 1,593,413 - Psest_1491 0.62 +0.5 1,593,486 - Psest_1491 0.74 -1.3 1,593,486 - Psest_1491 0.74 -1.1 1,593,602 + +0.3 1,593,653 - -2.1 1,593,653 - +0.3 1,593,653 - -2.6 1,593,653 - -0.9 1,593,653 - -2.5 1,593,773 + +0.6 1,593,773 + +0.8 1,593,774 - -0.1 1,593,777 + +1.5 1,593,777 + +1.3 1,593,778 - +0.1 1,593,783 + +1.9 1,593,783 + +0.4 1,593,783 + +0.8 1,593,783 + +2.3 1,593,832 + +0.2 1,593,832 + +0.0 1,593,832 + +0.8 1,593,839 + +2.8 1,593,839 + +1.0 1,593,839 + +1.6 1,593,839 + +1.0 1,593,857 + +0.6 1,594,141 + Psest_1492 0.49 +0.5 1,594,141 + Psest_1492 0.49 +0.7 1,594,141 + Psest_1492 0.49 -0.2 1,594,141 + Psest_1492 0.49 -1.1 1,594,142 - Psest_1492 0.49 +0.1 1,594,142 - Psest_1492 0.49 -0.2 1,594,216 + Psest_1492 0.65 -0.5 1,594,235 + Psest_1492 0.69 +0.6 1,594,235 + Psest_1492 0.69 -0.1 1,594,236 - Psest_1492 0.69 -0.4 1,594,294 + Psest_1492 0.81 +0.6 1,594,295 - Psest_1492 0.81 +0.6 1,594,295 - Psest_1492 0.81 +0.9 1,594,295 - Psest_1492 0.81 +1.4 1,594,295 - Psest_1492 0.81 +0.1 1,594,301 + Psest_1492 0.83 -1.7 1,594,301 + Psest_1492 0.83 +1.9 1,594,302 - Psest_1492 0.83 +0.4 1,594,302 - Psest_1492 0.83 +1.4 1,594,302 - Psest_1492 0.83 +0.1 1,594,302 - Psest_1492 0.83 -1.3 1,594,302 - Psest_1492 0.83 +1.1 1,594,303 + Psest_1492 0.83 +0.4 1,594,303 + Psest_1492 0.83 -1.2 1,594,303 + Psest_1492 0.83 +0.1 1,594,303 + Psest_1492 0.83 +0.1 1,594,303 + Psest_1492 0.83 -0.9 1,594,303 + Psest_1492 0.83 -0.2 1,594,303 + Psest_1492 0.83 +0.9 1,594,303 + Psest_1492 0.83 +0.4 1,594,303 + Psest_1492 0.83 +1.4 1,594,303 + Psest_1492 0.83 -1.4 1,594,303 + Psest_1492 0.83 +0.6 1,594,303 + Psest_1492 0.83 +2.9 1,594,303 + Psest_1492 0.83 +1.4 1,594,303 + Psest_1492 0.83 +0.6 1,594,303 + Psest_1492 0.83 -0.2 1,594,303 + Psest_1492 0.83 +1.9 1,594,303 + Psest_1492 0.83 -0.9 1,594,304 - Psest_1492 0.83 +1.9 1,594,304 - Psest_1492 0.83 -1.0 1,594,304 - Psest_1492 0.83 +0.6 1,594,304 - Psest_1492 0.83 -0.4 1,594,304 - Psest_1492 0.83 -0.4 1,594,304 - Psest_1492 0.83 -0.5 1,594,304 - Psest_1492 0.83 -0.9 1,594,304 - Psest_1492 0.83 +0.4 1,594,304 - Psest_1492 0.83 -0.8 1,594,304 - Psest_1492 0.83 -0.2 1,594,412 + +1.6 1,594,412 + +0.4 1,594,412 + -0.4 1,594,412 + +0.4 1,594,412 + -1.0 1,594,412 + -1.2 1,594,413 - +1.3 1,594,413 - +0.1 1,594,413 - -0.2 1,594,413 - +0.6 1,594,413 - +0.8 1,594,413 - +0.9 1,594,413 - +0.3 1,594,416 + +1.5 1,594,417 - +1.1 1,594,417 - +0.4 1,594,417 - +0.9 1,594,417 - +1.1 1,594,548 + +0.4 1,594,548 + -1.0 1,594,548 + -1.1 1,594,552 + -0.2 1,594,552 + -1.5 1,594,552 + -1.0 1,594,560 + -0.0 1,594,560 + -1.0 1,594,560 + -1.5 1,594,560 + -1.1 1,594,560 + -1.7
Or see this region's nucleotide sequence