Experiment: Def Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1343 and Psest_1344 are separated by 230 nucleotides Psest_1344 and Psest_1345 are separated by 11 nucleotides Psest_1345 and Psest_1346 are separated by 246 nucleotides
Psest_1343: Psest_1343 - Serine/threonine protein phosphatase, at 1,454,143 to 1,454,919
_1343
Psest_1344: Psest_1344 - rRNA methylases, at 1,455,150 to 1,455,881
_1344
Psest_1345: Psest_1345 - Uncharacterized FAD-dependent dehydrogenases, at 1,455,893 to 1,457,530
_1345
Psest_1346: Psest_1346 - 23S rRNA methylase, at 1,457,777 to 1,458,397
_1346
Position (kb)
1455
1456
1457
1458 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1455.034 kb on + strand at 1455.034 kb on + strand at 1455.049 kb on - strand at 1455.151 kb on + strand at 1455.166 kb on + strand at 1455.166 kb on + strand at 1455.166 kb on + strand at 1455.402 kb on + strand, within Psest_1344 at 1455.402 kb on + strand, within Psest_1344 at 1455.402 kb on + strand, within Psest_1344 at 1455.402 kb on + strand, within Psest_1344 at 1455.402 kb on + strand, within Psest_1344 at 1455.402 kb on + strand, within Psest_1344 at 1455.403 kb on - strand, within Psest_1344 at 1455.403 kb on - strand, within Psest_1344 at 1455.403 kb on - strand, within Psest_1344 at 1455.552 kb on + strand, within Psest_1344 at 1455.552 kb on + strand, within Psest_1344 at 1455.553 kb on - strand, within Psest_1344 at 1455.553 kb on - strand, within Psest_1344 at 1455.553 kb on - strand, within Psest_1344 at 1455.565 kb on + strand, within Psest_1344 at 1455.565 kb on + strand, within Psest_1344 at 1455.565 kb on + strand, within Psest_1344 at 1455.565 kb on + strand, within Psest_1344 at 1455.565 kb on + strand, within Psest_1344 at 1455.565 kb on + strand, within Psest_1344 at 1455.566 kb on - strand, within Psest_1344 at 1455.566 kb on - strand, within Psest_1344 at 1455.566 kb on - strand, within Psest_1344 at 1455.566 kb on - strand, within Psest_1344 at 1455.566 kb on - strand, within Psest_1344 at 1455.624 kb on + strand, within Psest_1344 at 1455.739 kb on + strand, within Psest_1344 at 1455.739 kb on + strand, within Psest_1344 at 1455.739 kb on + strand, within Psest_1344 at 1455.739 kb on + strand, within Psest_1344 at 1455.739 kb on + strand, within Psest_1344 at 1455.739 kb on + strand, within Psest_1344 at 1455.739 kb on + strand, within Psest_1344 at 1455.739 kb on + strand, within Psest_1344 at 1455.740 kb on - strand, within Psest_1344 at 1455.740 kb on - strand, within Psest_1344 at 1455.740 kb on - strand, within Psest_1344 at 1455.740 kb on - strand, within Psest_1344 at 1455.740 kb on - strand, within Psest_1344 at 1455.740 kb on - strand, within Psest_1344 at 1455.740 kb on - strand, within Psest_1344 at 1456.023 kb on + strand at 1456.189 kb on - strand, within Psest_1345 at 1456.223 kb on + strand, within Psest_1345 at 1456.236 kb on + strand, within Psest_1345 at 1456.236 kb on + strand, within Psest_1345 at 1456.237 kb on - strand, within Psest_1345 at 1456.335 kb on + strand, within Psest_1345 at 1456.540 kb on - strand, within Psest_1345 at 1456.540 kb on - strand, within Psest_1345 at 1456.567 kb on - strand, within Psest_1345 at 1456.567 kb on - strand, within Psest_1345 at 1456.567 kb on - strand, within Psest_1345 at 1456.578 kb on + strand, within Psest_1345 at 1456.578 kb on + strand, within Psest_1345 at 1456.579 kb on - strand, within Psest_1345 at 1456.612 kb on - strand, within Psest_1345 at 1456.612 kb on - strand, within Psest_1345 at 1456.612 kb on - strand, within Psest_1345 at 1456.692 kb on + strand, within Psest_1345 at 1456.692 kb on + strand, within Psest_1345 at 1456.692 kb on + strand, within Psest_1345 at 1456.692 kb on + strand, within Psest_1345 at 1456.693 kb on - strand, within Psest_1345 at 1456.693 kb on - strand, within Psest_1345 at 1456.693 kb on - strand, within Psest_1345 at 1456.693 kb on - strand, within Psest_1345 at 1456.693 kb on - strand, within Psest_1345 at 1456.693 kb on - strand, within Psest_1345 at 1456.693 kb on - strand, within Psest_1345 at 1456.754 kb on + strand, within Psest_1345 at 1456.755 kb on - strand, within Psest_1345 at 1456.755 kb on - strand, within Psest_1345 at 1456.755 kb on - strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.938 kb on + strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.939 kb on - strand, within Psest_1345 at 1456.996 kb on - strand, within Psest_1345 at 1457.275 kb on - strand, within Psest_1345 at 1457.364 kb on + strand, within Psest_1345 at 1457.364 kb on + strand, within Psest_1345 at 1457.364 kb on + strand, within Psest_1345 at 1457.364 kb on + strand, within Psest_1345 at 1457.364 kb on + strand, within Psest_1345 at 1457.364 kb on + strand, within Psest_1345 at 1457.364 kb on + strand, within Psest_1345 at 1457.364 kb on + strand, within Psest_1345 at 1457.365 kb on - strand, within Psest_1345 at 1457.365 kb on - strand, within Psest_1345 at 1457.365 kb on - strand, within Psest_1345 at 1457.365 kb on - strand, within Psest_1345 at 1457.365 kb on - strand, within Psest_1345 at 1457.365 kb on - strand, within Psest_1345 at 1457.403 kb on + strand at 1457.403 kb on + strand at 1457.403 kb on + strand at 1457.404 kb on - strand at 1457.404 kb on - strand at 1457.404 kb on - strand at 1457.404 kb on - strand at 1457.404 kb on - strand at 1457.404 kb on - strand at 1457.689 kb on + strand at 1457.689 kb on + strand at 1457.689 kb on + strand at 1457.691 kb on + strand at 1458.440 kb on - strand at 1458.455 kb on + strand at 1458.513 kb on + strand at 1458.513 kb on + strand at 1458.514 kb on - strand at 1458.514 kb on - strand at 1458.514 kb on - strand at 1458.514 kb on - strand at 1458.514 kb on - strand at 1458.514 kb on - strand at 1458.514 kb on - strand at 1458.514 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Carbenicillin 0.008 mg/ml remove 1,455,034 + -0.1 1,455,034 + -0.5 1,455,049 - -0.4 1,455,151 + -1.9 1,455,166 + -1.4 1,455,166 + -1.9 1,455,166 + -0.3 1,455,402 + Psest_1344 0.34 +0.6 1,455,402 + Psest_1344 0.34 +0.9 1,455,402 + Psest_1344 0.34 -0.6 1,455,402 + Psest_1344 0.34 -0.9 1,455,402 + Psest_1344 0.34 -0.3 1,455,402 + Psest_1344 0.34 +1.3 1,455,403 - Psest_1344 0.35 +0.5 1,455,403 - Psest_1344 0.35 -2.0 1,455,403 - Psest_1344 0.35 -1.2 1,455,552 + Psest_1344 0.55 -0.9 1,455,552 + Psest_1344 0.55 -1.8 1,455,553 - Psest_1344 0.55 -0.6 1,455,553 - Psest_1344 0.55 -0.6 1,455,553 - Psest_1344 0.55 -0.5 1,455,565 + Psest_1344 0.57 +0.7 1,455,565 + Psest_1344 0.57 -0.4 1,455,565 + Psest_1344 0.57 +1.1 1,455,565 + Psest_1344 0.57 +0.9 1,455,565 + Psest_1344 0.57 +1.3 1,455,565 + Psest_1344 0.57 +0.6 1,455,566 - Psest_1344 0.57 -0.5 1,455,566 - Psest_1344 0.57 -1.0 1,455,566 - Psest_1344 0.57 -0.4 1,455,566 - Psest_1344 0.57 +1.0 1,455,566 - Psest_1344 0.57 -2.0 1,455,624 + Psest_1344 0.65 -0.5 1,455,739 + Psest_1344 0.80 +0.0 1,455,739 + Psest_1344 0.80 -1.8 1,455,739 + Psest_1344 0.80 -0.2 1,455,739 + Psest_1344 0.80 -1.4 1,455,739 + Psest_1344 0.80 -2.2 1,455,739 + Psest_1344 0.80 +0.1 1,455,739 + Psest_1344 0.80 +0.1 1,455,739 + Psest_1344 0.80 +0.4 1,455,740 - Psest_1344 0.81 -1.9 1,455,740 - Psest_1344 0.81 -0.2 1,455,740 - Psest_1344 0.81 -0.2 1,455,740 - Psest_1344 0.81 -0.7 1,455,740 - Psest_1344 0.81 -0.2 1,455,740 - Psest_1344 0.81 -1.1 1,455,740 - Psest_1344 0.81 -0.4 1,456,023 + +0.2 1,456,189 - Psest_1345 0.18 +2.4 1,456,223 + Psest_1345 0.20 -1.5 1,456,236 + Psest_1345 0.21 -0.8 1,456,236 + Psest_1345 0.21 -0.4 1,456,237 - Psest_1345 0.21 -0.4 1,456,335 + Psest_1345 0.27 -0.3 1,456,540 - Psest_1345 0.39 +1.8 1,456,540 - Psest_1345 0.39 +1.1 1,456,567 - Psest_1345 0.41 +0.1 1,456,567 - Psest_1345 0.41 -0.3 1,456,567 - Psest_1345 0.41 +0.1 1,456,578 + Psest_1345 0.42 -0.4 1,456,578 + Psest_1345 0.42 -0.8 1,456,579 - Psest_1345 0.42 -0.0 1,456,612 - Psest_1345 0.44 +0.1 1,456,612 - Psest_1345 0.44 -0.1 1,456,612 - Psest_1345 0.44 -0.7 1,456,692 + Psest_1345 0.49 -0.0 1,456,692 + Psest_1345 0.49 -0.3 1,456,692 + Psest_1345 0.49 +1.8 1,456,692 + Psest_1345 0.49 -1.1 1,456,693 - Psest_1345 0.49 +0.2 1,456,693 - Psest_1345 0.49 -0.7 1,456,693 - Psest_1345 0.49 -1.1 1,456,693 - Psest_1345 0.49 +0.6 1,456,693 - Psest_1345 0.49 +0.7 1,456,693 - Psest_1345 0.49 +0.4 1,456,693 - Psest_1345 0.49 -1.5 1,456,754 + Psest_1345 0.53 -0.7 1,456,755 - Psest_1345 0.53 +0.0 1,456,755 - Psest_1345 0.53 +0.0 1,456,755 - Psest_1345 0.53 +0.0 1,456,938 + Psest_1345 0.64 -1.0 1,456,938 + Psest_1345 0.64 +0.3 1,456,938 + Psest_1345 0.64 -0.6 1,456,938 + Psest_1345 0.64 +2.0 1,456,938 + Psest_1345 0.64 -0.0 1,456,938 + Psest_1345 0.64 -0.2 1,456,938 + Psest_1345 0.64 +0.9 1,456,938 + Psest_1345 0.64 -1.4 1,456,938 + Psest_1345 0.64 +0.8 1,456,938 + Psest_1345 0.64 +0.0 1,456,938 + Psest_1345 0.64 +0.7 1,456,938 + Psest_1345 0.64 +0.2 1,456,938 + Psest_1345 0.64 +0.5 1,456,938 + Psest_1345 0.64 +0.6 1,456,938 + Psest_1345 0.64 +1.0 1,456,938 + Psest_1345 0.64 -0.8 1,456,938 + Psest_1345 0.64 -0.7 1,456,938 + Psest_1345 0.64 +1.5 1,456,938 + Psest_1345 0.64 +0.4 1,456,938 + Psest_1345 0.64 +0.3 1,456,939 - Psest_1345 0.64 -1.0 1,456,939 - Psest_1345 0.64 -1.2 1,456,939 - Psest_1345 0.64 -0.0 1,456,939 - Psest_1345 0.64 -1.5 1,456,939 - Psest_1345 0.64 -2.6 1,456,939 - Psest_1345 0.64 +0.0 1,456,939 - Psest_1345 0.64 +0.6 1,456,939 - Psest_1345 0.64 +0.8 1,456,939 - Psest_1345 0.64 -0.2 1,456,939 - Psest_1345 0.64 -1.1 1,456,939 - Psest_1345 0.64 -0.9 1,456,939 - Psest_1345 0.64 -0.1 1,456,939 - Psest_1345 0.64 -2.1 1,456,939 - Psest_1345 0.64 -1.5 1,456,939 - Psest_1345 0.64 -1.5 1,456,939 - Psest_1345 0.64 -0.2 1,456,939 - Psest_1345 0.64 +0.5 1,456,996 - Psest_1345 0.67 -0.1 1,457,275 - Psest_1345 0.84 +1.4 1,457,364 + Psest_1345 0.90 -0.3 1,457,364 + Psest_1345 0.90 -1.7 1,457,364 + Psest_1345 0.90 +0.8 1,457,364 + Psest_1345 0.90 +0.5 1,457,364 + Psest_1345 0.90 -0.3 1,457,364 + Psest_1345 0.90 -0.8 1,457,364 + Psest_1345 0.90 -0.4 1,457,364 + Psest_1345 0.90 -0.7 1,457,365 - Psest_1345 0.90 +1.0 1,457,365 - Psest_1345 0.90 +0.9 1,457,365 - Psest_1345 0.90 -1.0 1,457,365 - Psest_1345 0.90 +0.4 1,457,365 - Psest_1345 0.90 +0.2 1,457,365 - Psest_1345 0.90 -0.5 1,457,403 + -0.3 1,457,403 + -1.2 1,457,403 + -0.2 1,457,404 - +2.8 1,457,404 - +0.5 1,457,404 - +0.8 1,457,404 - +0.8 1,457,404 - +0.7 1,457,404 - -0.8 1,457,689 + +0.2 1,457,689 + -1.7 1,457,689 + -1.2 1,457,691 + +0.9 1,458,440 - +2.3 1,458,455 + -1.3 1,458,513 + -0.5 1,458,513 + -0.4 1,458,514 - +0.2 1,458,514 - +2.7 1,458,514 - +1.4 1,458,514 - -0.5 1,458,514 - +1.2 1,458,514 - +1.1 1,458,514 - +0.2 1,458,514 - +1.4
Or see this region's nucleotide sequence