Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3751

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3750 and Psest_3751 are separated by 207 nucleotidesPsest_3751 and Psest_3752 are separated by 24 nucleotidesPsest_3752 and Psest_3753 are separated by 21 nucleotidesPsest_3753 and Psest_3754 are separated by 41 nucleotides Psest_3750: Psest_3750 - Predicted signal transduction protein with a C-terminal ATPase domain, at 3,920,699 to 3,921,757 _3750 Psest_3751: Psest_3751 - argininosuccinate lyase, at 3,921,965 to 3,923,359 _3751 Psest_3752: Psest_3752 - hypothetical protein, at 3,923,384 to 3,923,626 _3752 Psest_3753: Psest_3753 - Acetyltransferases, at 3,923,648 to 3,924,127 _3753 Psest_3754: Psest_3754 - Uncharacterized protein involved in response to NO, at 3,924,169 to 3,925,317 _3754 Position (kb) 3921 3922 3923 3924Strain fitness (log2 ratio) -2 -1 0 1 2at 3920.973 kb on + strand, within Psest_3750at 3920.973 kb on + strand, within Psest_3750at 3921.062 kb on + strand, within Psest_3750at 3921.062 kb on + strand, within Psest_3750at 3921.099 kb on + strand, within Psest_3750at 3921.179 kb on + strand, within Psest_3750at 3921.345 kb on - strand, within Psest_3750at 3921.348 kb on + strand, within Psest_3750at 3921.348 kb on + strand, within Psest_3750at 3921.348 kb on + strand, within Psest_3750at 3921.348 kb on + strand, within Psest_3750at 3921.348 kb on + strand, within Psest_3750at 3921.349 kb on - strand, within Psest_3750at 3921.399 kb on + strand, within Psest_3750at 3921.444 kb on + strand, within Psest_3750at 3921.444 kb on + strand, within Psest_3750at 3921.444 kb on + strand, within Psest_3750at 3921.445 kb on - strand, within Psest_3750at 3921.445 kb on - strand, within Psest_3750at 3921.445 kb on - strand, within Psest_3750at 3921.445 kb on - strand, within Psest_3750at 3921.575 kb on + strand, within Psest_3750at 3921.575 kb on + strand, within Psest_3750at 3921.575 kb on + strand, within Psest_3750at 3921.576 kb on - strand, within Psest_3750at 3921.845 kb on + strandat 3921.918 kb on + strandat 3923.357 kb on + strandat 3923.450 kb on + strand, within Psest_3752at 3923.459 kb on + strand, within Psest_3752at 3923.459 kb on + strand, within Psest_3752at 3923.460 kb on - strand, within Psest_3752at 3923.465 kb on - strand, within Psest_3752at 3923.548 kb on + strand, within Psest_3752at 3923.548 kb on + strand, within Psest_3752at 3923.549 kb on - strand, within Psest_3752at 3923.549 kb on - strand, within Psest_3752at 3923.549 kb on - strand, within Psest_3752at 3923.618 kb on + strandat 3923.618 kb on + strandat 3923.618 kb on + strandat 3923.618 kb on + strandat 3923.618 kb on + strandat 3923.618 kb on + strandat 3923.618 kb on + strandat 3923.619 kb on - strandat 3923.619 kb on - strandat 3923.619 kb on - strandat 3923.619 kb on - strandat 3923.619 kb on - strandat 3923.723 kb on + strand, within Psest_3753at 3923.724 kb on - strand, within Psest_3753at 3923.724 kb on - strand, within Psest_3753at 3923.724 kb on - strand, within Psest_3753at 3923.849 kb on + strand, within Psest_3753at 3923.849 kb on + strand, within Psest_3753at 3923.861 kb on + strand, within Psest_3753at 3923.861 kb on + strand, within Psest_3753at 3923.891 kb on + strand, within Psest_3753at 3923.906 kb on + strand, within Psest_3753at 3923.906 kb on + strand, within Psest_3753at 3923.906 kb on + strand, within Psest_3753at 3924.041 kb on + strand, within Psest_3753at 3924.041 kb on + strand, within Psest_3753at 3924.041 kb on + strand, within Psest_3753at 3924.042 kb on - strand, within Psest_3753at 3924.042 kb on - strand, within Psest_3753at 3924.232 kb on + strandat 3924.232 kb on + strandat 3924.232 kb on + strandat 3924.232 kb on + strandat 3924.233 kb on - strandat 3924.233 kb on - strandat 3924.233 kb on - strandat 3924.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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3,920,973 + Psest_3750 0.26 -1.6
3,920,973 + Psest_3750 0.26 -0.4
3,921,062 + Psest_3750 0.34 +0.1
3,921,062 + Psest_3750 0.34 -0.1
3,921,099 + Psest_3750 0.38 +1.2
3,921,179 + Psest_3750 0.45 -2.1
3,921,345 - Psest_3750 0.61 -2.1
3,921,348 + Psest_3750 0.61 +0.6
3,921,348 + Psest_3750 0.61 -2.4
3,921,348 + Psest_3750 0.61 -0.7
3,921,348 + Psest_3750 0.61 -0.9
3,921,348 + Psest_3750 0.61 -2.3
3,921,349 - Psest_3750 0.61 -0.1
3,921,399 + Psest_3750 0.66 +0.3
3,921,444 + Psest_3750 0.70 -1.3
3,921,444 + Psest_3750 0.70 -1.1
3,921,444 + Psest_3750 0.70 -0.4
3,921,445 - Psest_3750 0.70 -2.0
3,921,445 - Psest_3750 0.70 -0.8
3,921,445 - Psest_3750 0.70 -0.4
3,921,445 - Psest_3750 0.70 -2.3
3,921,575 + Psest_3750 0.83 -1.4
3,921,575 + Psest_3750 0.83 -0.9
3,921,575 + Psest_3750 0.83 -1.6
3,921,576 - Psest_3750 0.83 +0.4
3,921,845 + +0.4
3,921,918 + +1.0
3,923,357 + +1.9
3,923,450 + Psest_3752 0.27 -1.3
3,923,459 + Psest_3752 0.31 -1.1
3,923,459 + Psest_3752 0.31 -1.9
3,923,460 - Psest_3752 0.31 +0.1
3,923,465 - Psest_3752 0.33 -0.9
3,923,548 + Psest_3752 0.67 -0.6
3,923,548 + Psest_3752 0.67 +0.3
3,923,549 - Psest_3752 0.68 +0.2
3,923,549 - Psest_3752 0.68 -0.4
3,923,549 - Psest_3752 0.68 -0.3
3,923,618 + -0.3
3,923,618 + -0.2
3,923,618 + +1.1
3,923,618 + -2.7
3,923,618 + +0.0
3,923,618 + -0.2
3,923,618 + -1.2
3,923,619 - -1.2
3,923,619 - +0.3
3,923,619 - -1.1
3,923,619 - +0.8
3,923,619 - -1.4
3,923,723 + Psest_3753 0.16 -0.2
3,923,724 - Psest_3753 0.16 -0.4
3,923,724 - Psest_3753 0.16 +0.1
3,923,724 - Psest_3753 0.16 -1.5
3,923,849 + Psest_3753 0.42 -2.3
3,923,849 + Psest_3753 0.42 -0.2
3,923,861 + Psest_3753 0.44 +1.2
3,923,861 + Psest_3753 0.44 +0.6
3,923,891 + Psest_3753 0.51 -0.1
3,923,906 + Psest_3753 0.54 +0.0
3,923,906 + Psest_3753 0.54 -0.1
3,923,906 + Psest_3753 0.54 +1.0
3,924,041 + Psest_3753 0.82 -0.8
3,924,041 + Psest_3753 0.82 -0.9
3,924,041 + Psest_3753 0.82 -0.1
3,924,042 - Psest_3753 0.82 +0.5
3,924,042 - Psest_3753 0.82 -0.4
3,924,232 + -0.1
3,924,232 + -0.5
3,924,232 + +0.3
3,924,232 + -0.1
3,924,233 - +0.2
3,924,233 - +0.7
3,924,233 - -0.0
3,924,233 - +0.3

Or see this region's nucleotide sequence