Experiment: Def Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3437 and Psest_3438 are separated by 266 nucleotides Psest_3438 and Psest_3439 are separated by 114 nucleotides Psest_3439 and Psest_3440 are separated by 95 nucleotides
Psest_3437: Psest_3437 - diguanylate cyclase (GGDEF) domain, at 3,606,759 to 3,607,544
_3437
Psest_3438: Psest_3438 - Glutamate dehydrogenase/leucine dehydrogenase, at 3,607,811 to 3,609,148
_3438
Psest_3439: Psest_3439 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 3,609,263 to 3,610,039
_3439
Psest_3440: Psest_3440 - 16S RNA G1207 methylase RsmC, at 3,610,135 to 3,611,262
_3440
Position (kb)
3607
3608
3609
3610 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3607.140 kb on + strand, within Psest_3437 at 3607.461 kb on + strand, within Psest_3437 at 3607.461 kb on + strand, within Psest_3437 at 3607.461 kb on + strand, within Psest_3437 at 3607.461 kb on + strand, within Psest_3437 at 3607.461 kb on + strand, within Psest_3437 at 3607.462 kb on - strand, within Psest_3437 at 3607.774 kb on + strand at 3607.807 kb on - strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3608.075 kb on + strand, within Psest_3438 at 3608.075 kb on + strand, within Psest_3438 at 3608.076 kb on - strand, within Psest_3438 at 3608.351 kb on + strand, within Psest_3438 at 3608.351 kb on + strand, within Psest_3438 at 3608.352 kb on - strand, within Psest_3438 at 3608.453 kb on + strand, within Psest_3438 at 3608.453 kb on + strand, within Psest_3438 at 3608.453 kb on + strand, within Psest_3438 at 3608.453 kb on + strand, within Psest_3438 at 3608.453 kb on + strand, within Psest_3438 at 3608.454 kb on - strand, within Psest_3438 at 3608.454 kb on - strand, within Psest_3438 at 3608.454 kb on - strand, within Psest_3438 at 3608.454 kb on - strand, within Psest_3438 at 3608.454 kb on - strand, within Psest_3438 at 3608.541 kb on - strand, within Psest_3438 at 3608.646 kb on - strand, within Psest_3438 at 3608.714 kb on + strand, within Psest_3438 at 3608.715 kb on - strand, within Psest_3438 at 3608.901 kb on - strand, within Psest_3438 at 3608.901 kb on - strand, within Psest_3438 at 3609.077 kb on + strand at 3609.077 kb on + strand at 3609.077 kb on + strand at 3609.077 kb on + strand at 3609.078 kb on - strand at 3609.271 kb on - strand at 3609.271 kb on - strand at 3609.505 kb on - strand, within Psest_3439 at 3609.505 kb on - strand, within Psest_3439 at 3609.505 kb on - strand, within Psest_3439 at 3609.505 kb on - strand, within Psest_3439 at 3609.570 kb on + strand, within Psest_3439 at 3609.571 kb on - strand, within Psest_3439 at 3609.598 kb on + strand, within Psest_3439 at 3609.600 kb on + strand, within Psest_3439 at 3609.600 kb on + strand, within Psest_3439 at 3609.600 kb on + strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.867 kb on + strand, within Psest_3439 at 3609.867 kb on + strand, within Psest_3439 at 3609.884 kb on - strand, within Psest_3439 at 3610.039 kb on + strand at 3610.039 kb on + strand at 3610.039 kb on + strand at 3610.039 kb on + strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.098 kb on + strand at 3610.098 kb on + strand at 3610.099 kb on - strand at 3610.140 kb on + strand at 3610.141 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM remove 3,607,140 + Psest_3437 0.48 +0.8 3,607,461 + Psest_3437 0.89 -0.6 3,607,461 + Psest_3437 0.89 -0.4 3,607,461 + Psest_3437 0.89 -0.9 3,607,461 + Psest_3437 0.89 -0.5 3,607,461 + Psest_3437 0.89 -0.1 3,607,462 - Psest_3437 0.89 +0.5 3,607,774 + -0.4 3,607,807 - +0.4 3,607,937 + -0.1 3,607,937 + -0.4 3,607,937 + -1.4 3,607,937 + -1.3 3,607,937 + -2.4 3,607,937 + -0.1 3,607,937 + +0.2 3,607,937 + -0.5 3,607,937 + -0.9 3,607,937 + -0.2 3,607,938 - -0.1 3,607,938 - -2.5 3,607,938 - +0.8 3,607,938 - -0.1 3,607,938 - +1.0 3,607,938 - +1.4 3,607,938 - -0.1 3,607,938 - +0.2 3,607,938 - +0.5 3,608,075 + Psest_3438 0.20 +0.5 3,608,075 + Psest_3438 0.20 -1.7 3,608,076 - Psest_3438 0.20 +0.3 3,608,351 + Psest_3438 0.40 +0.2 3,608,351 + Psest_3438 0.40 -0.1 3,608,352 - Psest_3438 0.40 -0.1 3,608,453 + Psest_3438 0.48 -0.6 3,608,453 + Psest_3438 0.48 -0.1 3,608,453 + Psest_3438 0.48 +0.5 3,608,453 + Psest_3438 0.48 +0.6 3,608,453 + Psest_3438 0.48 -0.2 3,608,454 - Psest_3438 0.48 -0.1 3,608,454 - Psest_3438 0.48 -0.3 3,608,454 - Psest_3438 0.48 +0.8 3,608,454 - Psest_3438 0.48 -0.3 3,608,454 - Psest_3438 0.48 -0.7 3,608,541 - Psest_3438 0.55 -1.6 3,608,646 - Psest_3438 0.62 +0.6 3,608,714 + Psest_3438 0.67 +1.1 3,608,715 - Psest_3438 0.68 -0.7 3,608,901 - Psest_3438 0.81 -0.4 3,608,901 - Psest_3438 0.81 -0.3 3,609,077 + +0.3 3,609,077 + -0.2 3,609,077 + +1.4 3,609,077 + +0.7 3,609,078 - -0.8 3,609,271 - +1.3 3,609,271 - +1.7 3,609,505 - Psest_3439 0.31 +1.3 3,609,505 - Psest_3439 0.31 +2.2 3,609,505 - Psest_3439 0.31 +1.3 3,609,505 - Psest_3439 0.31 +1.0 3,609,570 + Psest_3439 0.40 -0.5 3,609,571 - Psest_3439 0.40 +0.6 3,609,598 + Psest_3439 0.43 -1.7 3,609,600 + Psest_3439 0.43 -0.8 3,609,600 + Psest_3439 0.43 -0.3 3,609,600 + Psest_3439 0.43 -0.1 3,609,601 - Psest_3439 0.44 +1.9 3,609,601 - Psest_3439 0.44 -0.1 3,609,601 - Psest_3439 0.44 -0.1 3,609,601 - Psest_3439 0.44 +1.3 3,609,601 - Psest_3439 0.44 +1.9 3,609,867 + Psest_3439 0.78 +0.2 3,609,867 + Psest_3439 0.78 +0.4 3,609,884 - Psest_3439 0.80 -0.2 3,610,039 + -0.1 3,610,039 + +0.1 3,610,039 + -0.3 3,610,039 + -0.1 3,610,040 - +0.4 3,610,040 - +0.3 3,610,040 - -1.9 3,610,040 - -0.3 3,610,040 - +0.9 3,610,098 + -0.2 3,610,098 + -1.2 3,610,099 - -0.5 3,610,140 + +0.7 3,610,141 - +0.2
Or see this region's nucleotide sequence