Experiment: Def Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3311 and Psest_3312 overlap by 1 nucleotides Psest_3312 and Psest_3313 are separated by 145 nucleotides Psest_3313 and Psest_3314 are separated by 74 nucleotides Psest_3314 and Psest_3315 are separated by 7 nucleotides Psest_3315 and Psest_3316 are separated by 15 nucleotides
Psest_3311: Psest_3311 - lipopolysaccharide transport periplasmic protein LptA, at 3,475,274 to 3,475,819
_3311
Psest_3312: Psest_3312 - ABC-type (unclassified) transport system, ATPase component, at 3,475,819 to 3,476,544
_3312
Psest_3313: Psest_3313 - RNA polymerase sigma-54 factor, at 3,476,690 to 3,478,198
_3313
Psest_3314: Psest_3314 - ribosomal subunit interface protein, at 3,478,273 to 3,478,581
_3314
Psest_3315: Psest_3315 - PTS IIA-like nitrogen-regulatory protein PtsN, at 3,478,589 to 3,479,053
_3315
Psest_3316: Psest_3316 - Predicted P-loop-containing kinase, at 3,479,069 to 3,479,926
_3316
Position (kb)
3476
3477
3478
3479 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3476.543 kb on - strand at 3476.604 kb on + strand at 3476.605 kb on - strand at 3476.605 kb on - strand at 3476.606 kb on + strand at 3476.606 kb on + strand at 3476.606 kb on + strand at 3476.606 kb on + strand at 3476.607 kb on - strand at 3476.607 kb on - strand at 3476.607 kb on - strand at 3476.667 kb on + strand at 3476.667 kb on + strand at 3476.667 kb on + strand at 3476.667 kb on + strand at 3476.667 kb on + strand at 3476.667 kb on + strand at 3476.667 kb on + strand at 3476.667 kb on + strand at 3476.667 kb on + strand at 3478.233 kb on + strand at 3478.266 kb on + strand at 3478.272 kb on + strand at 3478.307 kb on + strand, within Psest_3314 at 3478.307 kb on + strand, within Psest_3314 at 3478.307 kb on + strand, within Psest_3314 at 3478.327 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.483 kb on + strand, within Psest_3314 at 3478.550 kb on + strand, within Psest_3314 at 3478.550 kb on + strand, within Psest_3314 at 3479.085 kb on + strand at 3479.085 kb on + strand at 3479.085 kb on + strand at 3479.085 kb on + strand at 3479.085 kb on + strand at 3479.085 kb on + strand at 3479.086 kb on - strand at 3479.086 kb on - strand at 3479.086 kb on - strand at 3479.086 kb on - strand at 3479.086 kb on - strand at 3479.127 kb on + strand at 3479.128 kb on - strand at 3479.128 kb on - strand at 3479.147 kb on + strand at 3479.147 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM remove 3,476,543 - +0.9 3,476,604 + +0.5 3,476,605 - +1.6 3,476,605 - +1.9 3,476,606 + -1.5 3,476,606 + -1.5 3,476,606 + -3.5 3,476,606 + -2.1 3,476,607 - +2.4 3,476,607 - +2.5 3,476,607 - +2.2 3,476,667 + +1.1 3,476,667 + +1.6 3,476,667 + +1.5 3,476,667 + -0.0 3,476,667 + +1.6 3,476,667 + +1.7 3,476,667 + +2.2 3,476,667 + +2.2 3,476,667 + -0.1 3,478,233 + +0.1 3,478,266 + -1.0 3,478,272 + -1.6 3,478,307 + Psest_3314 0.11 +0.8 3,478,307 + Psest_3314 0.11 -1.7 3,478,307 + Psest_3314 0.11 -0.6 3,478,327 + Psest_3314 0.17 +0.0 3,478,483 + Psest_3314 0.68 +0.7 3,478,483 + Psest_3314 0.68 -0.1 3,478,483 + Psest_3314 0.68 +0.4 3,478,483 + Psest_3314 0.68 +0.8 3,478,483 + Psest_3314 0.68 +0.6 3,478,483 + Psest_3314 0.68 +0.8 3,478,483 + Psest_3314 0.68 +0.0 3,478,483 + Psest_3314 0.68 -1.2 3,478,483 + Psest_3314 0.68 +0.3 3,478,483 + Psest_3314 0.68 +0.0 3,478,483 + Psest_3314 0.68 +0.1 3,478,483 + Psest_3314 0.68 +0.5 3,478,483 + Psest_3314 0.68 +0.2 3,478,483 + Psest_3314 0.68 +0.9 3,478,483 + Psest_3314 0.68 -0.7 3,478,483 + Psest_3314 0.68 +0.2 3,478,483 + Psest_3314 0.68 +0.8 3,478,483 + Psest_3314 0.68 +1.4 3,478,483 + Psest_3314 0.68 -0.4 3,478,483 + Psest_3314 0.68 +0.2 3,478,483 + Psest_3314 0.68 +1.0 3,478,550 + Psest_3314 0.90 +0.6 3,478,550 + Psest_3314 0.90 -0.3 3,479,085 + -0.2 3,479,085 + -2.3 3,479,085 + -3.0 3,479,085 + -1.8 3,479,085 + -3.7 3,479,085 + -2.4 3,479,086 - -2.8 3,479,086 - -2.7 3,479,086 - -1.5 3,479,086 - -3.7 3,479,086 - -2.1 3,479,127 + -2.9 3,479,128 - -2.7 3,479,128 - -0.9 3,479,147 + -1.7 3,479,147 + -2.3
Or see this region's nucleotide sequence