Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3313

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3311 and Psest_3312 overlap by 1 nucleotidesPsest_3312 and Psest_3313 are separated by 145 nucleotidesPsest_3313 and Psest_3314 are separated by 74 nucleotidesPsest_3314 and Psest_3315 are separated by 7 nucleotidesPsest_3315 and Psest_3316 are separated by 15 nucleotides Psest_3311: Psest_3311 - lipopolysaccharide transport periplasmic protein LptA, at 3,475,274 to 3,475,819 _3311 Psest_3312: Psest_3312 - ABC-type (unclassified) transport system, ATPase component, at 3,475,819 to 3,476,544 _3312 Psest_3313: Psest_3313 - RNA polymerase sigma-54 factor, at 3,476,690 to 3,478,198 _3313 Psest_3314: Psest_3314 - ribosomal subunit interface protein, at 3,478,273 to 3,478,581 _3314 Psest_3315: Psest_3315 - PTS IIA-like nitrogen-regulatory protein PtsN, at 3,478,589 to 3,479,053 _3315 Psest_3316: Psest_3316 - Predicted P-loop-containing kinase, at 3,479,069 to 3,479,926 _3316 Position (kb) 3476 3477 3478 3479Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3476.543 kb on - strandat 3476.604 kb on + strandat 3476.605 kb on - strandat 3476.605 kb on - strandat 3476.606 kb on + strandat 3476.606 kb on + strandat 3476.606 kb on + strandat 3476.606 kb on + strandat 3476.607 kb on - strandat 3476.607 kb on - strandat 3476.607 kb on - strandat 3476.667 kb on + strandat 3476.667 kb on + strandat 3476.667 kb on + strandat 3476.667 kb on + strandat 3476.667 kb on + strandat 3476.667 kb on + strandat 3476.667 kb on + strandat 3476.667 kb on + strandat 3476.667 kb on + strandat 3478.233 kb on + strandat 3478.266 kb on + strandat 3478.272 kb on + strandat 3478.307 kb on + strand, within Psest_3314at 3478.307 kb on + strand, within Psest_3314at 3478.307 kb on + strand, within Psest_3314at 3478.327 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.483 kb on + strand, within Psest_3314at 3478.550 kb on + strand, within Psest_3314at 3478.550 kb on + strand, within Psest_3314at 3479.085 kb on + strandat 3479.085 kb on + strandat 3479.085 kb on + strandat 3479.085 kb on + strandat 3479.085 kb on + strandat 3479.085 kb on + strandat 3479.086 kb on - strandat 3479.086 kb on - strandat 3479.086 kb on - strandat 3479.086 kb on - strandat 3479.086 kb on - strandat 3479.127 kb on + strandat 3479.128 kb on - strandat 3479.128 kb on - strandat 3479.147 kb on + strandat 3479.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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3,476,543 - +0.9
3,476,604 + +0.5
3,476,605 - +1.6
3,476,605 - +1.9
3,476,606 + -1.5
3,476,606 + -1.5
3,476,606 + -3.5
3,476,606 + -2.1
3,476,607 - +2.4
3,476,607 - +2.5
3,476,607 - +2.2
3,476,667 + +1.1
3,476,667 + +1.6
3,476,667 + +1.5
3,476,667 + -0.0
3,476,667 + +1.6
3,476,667 + +1.7
3,476,667 + +2.2
3,476,667 + +2.2
3,476,667 + -0.1
3,478,233 + +0.1
3,478,266 + -1.0
3,478,272 + -1.6
3,478,307 + Psest_3314 0.11 +0.8
3,478,307 + Psest_3314 0.11 -1.7
3,478,307 + Psest_3314 0.11 -0.6
3,478,327 + Psest_3314 0.17 +0.0
3,478,483 + Psest_3314 0.68 +0.7
3,478,483 + Psest_3314 0.68 -0.1
3,478,483 + Psest_3314 0.68 +0.4
3,478,483 + Psest_3314 0.68 +0.8
3,478,483 + Psest_3314 0.68 +0.6
3,478,483 + Psest_3314 0.68 +0.8
3,478,483 + Psest_3314 0.68 +0.0
3,478,483 + Psest_3314 0.68 -1.2
3,478,483 + Psest_3314 0.68 +0.3
3,478,483 + Psest_3314 0.68 +0.0
3,478,483 + Psest_3314 0.68 +0.1
3,478,483 + Psest_3314 0.68 +0.5
3,478,483 + Psest_3314 0.68 +0.2
3,478,483 + Psest_3314 0.68 +0.9
3,478,483 + Psest_3314 0.68 -0.7
3,478,483 + Psest_3314 0.68 +0.2
3,478,483 + Psest_3314 0.68 +0.8
3,478,483 + Psest_3314 0.68 +1.4
3,478,483 + Psest_3314 0.68 -0.4
3,478,483 + Psest_3314 0.68 +0.2
3,478,483 + Psest_3314 0.68 +1.0
3,478,550 + Psest_3314 0.90 +0.6
3,478,550 + Psest_3314 0.90 -0.3
3,479,085 + -0.2
3,479,085 + -2.3
3,479,085 + -3.0
3,479,085 + -1.8
3,479,085 + -3.7
3,479,085 + -2.4
3,479,086 - -2.8
3,479,086 - -2.7
3,479,086 - -1.5
3,479,086 - -3.7
3,479,086 - -2.1
3,479,127 + -2.9
3,479,128 - -2.7
3,479,128 - -0.9
3,479,147 + -1.7
3,479,147 + -2.3

Or see this region's nucleotide sequence