Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3135

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3134 and Psest_3135 are separated by 245 nucleotidesPsest_3135 and Psest_3136 are separated by 16 nucleotides Psest_3134: Psest_3134 - signal recognition particle protein, at 3,309,026 to 3,310,402 _3134 Psest_3135: Psest_3135 - ABC-type uncharacterized transport system, permease component, at 3,310,648 to 3,311,448 _3135 Psest_3136: Psest_3136 - Putative Mg2+ and Co2+ transporter CorB, at 3,311,465 to 3,312,751 _3136 Position (kb) 3310 3311 3312Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3310.440 kb on - strandat 3310.441 kb on + strandat 3310.441 kb on + strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.442 kb on - strandat 3310.571 kb on - strandat 3310.575 kb on - strandat 3310.647 kb on + strandat 3311.443 kb on - strandat 3311.578 kb on - strandat 3311.784 kb on + strand, within Psest_3136at 3311.784 kb on + strand, within Psest_3136at 3311.784 kb on + strand, within Psest_3136at 3312.042 kb on + strand, within Psest_3136at 3312.153 kb on + strand, within Psest_3136at 3312.153 kb on + strand, within Psest_3136at 3312.154 kb on - strand, within Psest_3136at 3312.154 kb on - strand, within Psest_3136at 3312.300 kb on - strand, within Psest_3136at 3312.300 kb on - strand, within Psest_3136at 3312.378 kb on + strand, within Psest_3136at 3312.379 kb on - strand, within Psest_3136at 3312.386 kb on + strand, within Psest_3136

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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3,310,440 - +0.6
3,310,441 + -0.4
3,310,441 + -0.3
3,310,442 - +0.0
3,310,442 - -0.0
3,310,442 - -0.5
3,310,442 - -1.7
3,310,442 - -0.3
3,310,442 - -0.3
3,310,442 - +0.5
3,310,442 - -0.3
3,310,442 - +0.7
3,310,442 - -0.2
3,310,442 - -0.4
3,310,442 - -0.3
3,310,442 - +0.2
3,310,442 - -1.1
3,310,442 - -0.4
3,310,442 - -0.1
3,310,571 - +0.6
3,310,575 - +1.1
3,310,647 + -2.7
3,311,443 - -1.5
3,311,578 - -4.0
3,311,784 + Psest_3136 0.25 -0.1
3,311,784 + Psest_3136 0.25 -0.1
3,311,784 + Psest_3136 0.25 -0.2
3,312,042 + Psest_3136 0.45 -0.0
3,312,153 + Psest_3136 0.53 -0.6
3,312,153 + Psest_3136 0.53 -1.1
3,312,154 - Psest_3136 0.54 +0.0
3,312,154 - Psest_3136 0.54 -0.3
3,312,300 - Psest_3136 0.65 -0.9
3,312,300 - Psest_3136 0.65 +0.3
3,312,378 + Psest_3136 0.71 -1.7
3,312,379 - Psest_3136 0.71 -1.1
3,312,386 + Psest_3136 0.72 +1.0

Or see this region's nucleotide sequence