Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3105

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3104 and Psest_3105 are separated by 109 nucleotidesPsest_3105 and Psest_3106 are separated by 143 nucleotidesPsest_3106 and Psest_3107 are separated by 34 nucleotides Psest_3104: Psest_3104 - folate-binding protein YgfZ, at 3,281,792 to 3,282,739 _3104 Psest_3105: Psest_3105 - Predicted signal transduction protein, at 3,282,849 to 3,283,685 _3105 Psest_3106: Psest_3106 - Predicted outer membrane protein, at 3,283,829 to 3,284,344 _3106 Psest_3107: Psest_3107 - uracil-DNA glycosylase, at 3,284,379 to 3,285,074 _3107 Position (kb) 3282 3283 3284Strain fitness (log2 ratio) -2 -1 0 1at 3282.781 kb on + strandat 3282.781 kb on + strandat 3282.782 kb on - strandat 3282.792 kb on + strandat 3282.837 kb on + strandat 3282.837 kb on + strandat 3282.837 kb on + strandat 3282.837 kb on + strandat 3282.837 kb on + strandat 3282.838 kb on - strandat 3282.838 kb on - strandat 3282.838 kb on - strandat 3282.838 kb on - strandat 3282.838 kb on - strandat 3282.838 kb on - strandat 3282.838 kb on - strandat 3282.838 kb on - strandat 3282.838 kb on - strandat 3283.116 kb on + strand, within Psest_3105at 3283.116 kb on + strand, within Psest_3105at 3283.116 kb on + strand, within Psest_3105at 3283.117 kb on - strand, within Psest_3105at 3283.117 kb on - strand, within Psest_3105at 3283.117 kb on - strand, within Psest_3105at 3283.117 kb on - strand, within Psest_3105at 3283.117 kb on - strand, within Psest_3105at 3283.117 kb on - strand, within Psest_3105at 3283.117 kb on - strand, within Psest_3105at 3283.201 kb on + strand, within Psest_3105at 3283.202 kb on - strand, within Psest_3105at 3283.254 kb on + strand, within Psest_3105at 3283.329 kb on + strand, within Psest_3105at 3283.330 kb on - strand, within Psest_3105at 3283.467 kb on + strand, within Psest_3105at 3283.467 kb on + strand, within Psest_3105at 3283.468 kb on - strand, within Psest_3105at 3283.468 kb on - strand, within Psest_3105at 3283.503 kb on + strand, within Psest_3105at 3283.531 kb on + strand, within Psest_3105at 3283.539 kb on + strand, within Psest_3105at 3283.539 kb on + strand, within Psest_3105at 3283.540 kb on - strand, within Psest_3105at 3283.540 kb on - strand, within Psest_3105at 3283.540 kb on - strand, within Psest_3105at 3283.540 kb on - strand, within Psest_3105at 3283.540 kb on - strand, within Psest_3105at 3283.540 kb on - strand, within Psest_3105at 3283.540 kb on - strand, within Psest_3105at 3283.540 kb on - strand, within Psest_3105at 3283.540 kb on - strand, within Psest_3105at 3283.540 kb on - strand, within Psest_3105at 3283.683 kb on + strandat 3283.792 kb on - strandat 3283.919 kb on - strand, within Psest_3106at 3284.039 kb on - strand, within Psest_3106at 3284.067 kb on + strand, within Psest_3106at 3284.171 kb on + strand, within Psest_3106at 3284.172 kb on - strand, within Psest_3106at 3284.172 kb on - strand, within Psest_3106at 3284.216 kb on + strand, within Psest_3106at 3284.217 kb on - strand, within Psest_3106at 3284.225 kb on + strand, within Psest_3106at 3284.225 kb on + strand, within Psest_3106at 3284.225 kb on + strand, within Psest_3106at 3284.225 kb on + strand, within Psest_3106at 3284.226 kb on - strand, within Psest_3106at 3284.226 kb on - strand, within Psest_3106at 3284.502 kb on + strand, within Psest_3107at 3284.503 kb on - strand, within Psest_3107at 3284.503 kb on - strand, within Psest_3107at 3284.572 kb on - strand, within Psest_3107at 3284.682 kb on - strand, within Psest_3107

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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3,282,781 + +0.2
3,282,781 + -0.2
3,282,782 - +0.2
3,282,792 + -0.2
3,282,837 + +0.1
3,282,837 + -0.6
3,282,837 + -0.8
3,282,837 + -0.5
3,282,837 + -1.5
3,282,838 - -1.5
3,282,838 - -0.1
3,282,838 - +1.2
3,282,838 - -0.4
3,282,838 - -0.7
3,282,838 - -1.1
3,282,838 - -1.4
3,282,838 - -0.7
3,282,838 - -0.8
3,283,116 + Psest_3105 0.32 -0.6
3,283,116 + Psest_3105 0.32 -1.5
3,283,116 + Psest_3105 0.32 +0.3
3,283,117 - Psest_3105 0.32 -1.2
3,283,117 - Psest_3105 0.32 -1.4
3,283,117 - Psest_3105 0.32 -2.5
3,283,117 - Psest_3105 0.32 -2.6
3,283,117 - Psest_3105 0.32 -0.0
3,283,117 - Psest_3105 0.32 -1.2
3,283,117 - Psest_3105 0.32 -1.1
3,283,201 + Psest_3105 0.42 -1.5
3,283,202 - Psest_3105 0.42 -1.2
3,283,254 + Psest_3105 0.48 -0.8
3,283,329 + Psest_3105 0.57 -0.2
3,283,330 - Psest_3105 0.57 +0.9
3,283,467 + Psest_3105 0.74 -0.1
3,283,467 + Psest_3105 0.74 +0.5
3,283,468 - Psest_3105 0.74 -1.4
3,283,468 - Psest_3105 0.74 -1.7
3,283,503 + Psest_3105 0.78 -0.6
3,283,531 + Psest_3105 0.81 -1.3
3,283,539 + Psest_3105 0.82 -0.2
3,283,539 + Psest_3105 0.82 -0.5
3,283,540 - Psest_3105 0.83 -1.1
3,283,540 - Psest_3105 0.83 +0.3
3,283,540 - Psest_3105 0.83 +0.1
3,283,540 - Psest_3105 0.83 -0.2
3,283,540 - Psest_3105 0.83 -0.8
3,283,540 - Psest_3105 0.83 -1.0
3,283,540 - Psest_3105 0.83 -1.2
3,283,540 - Psest_3105 0.83 +0.2
3,283,540 - Psest_3105 0.83 -0.6
3,283,540 - Psest_3105 0.83 -1.0
3,283,683 + -1.6
3,283,792 - +0.5
3,283,919 - Psest_3106 0.17 +0.1
3,284,039 - Psest_3106 0.41 +0.5
3,284,067 + Psest_3106 0.46 -0.5
3,284,171 + Psest_3106 0.66 -1.4
3,284,172 - Psest_3106 0.66 -0.2
3,284,172 - Psest_3106 0.66 +0.8
3,284,216 + Psest_3106 0.75 +0.1
3,284,217 - Psest_3106 0.75 +0.4
3,284,225 + Psest_3106 0.77 -1.1
3,284,225 + Psest_3106 0.77 -0.4
3,284,225 + Psest_3106 0.77 -0.8
3,284,225 + Psest_3106 0.77 -1.5
3,284,226 - Psest_3106 0.77 +1.0
3,284,226 - Psest_3106 0.77 +0.8
3,284,502 + Psest_3107 0.18 +0.0
3,284,503 - Psest_3107 0.18 +0.4
3,284,503 - Psest_3107 0.18 +0.5
3,284,572 - Psest_3107 0.28 -0.0
3,284,682 - Psest_3107 0.44 +1.0

Or see this region's nucleotide sequence