Experiment: Def Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3041 and Psest_3042 are separated by 13 nucleotides Psest_3042 and Psest_3043 are separated by 10 nucleotides Psest_3043 and Psest_3044 are separated by 102 nucleotides Psest_3044 and Psest_3045 are separated by 330 nucleotides
Psest_3041: Psest_3041 - periplasmic nitrate reductase, large subunit, at 3,223,107 to 3,225,611
_3041
Psest_3042: Psest_3042 - Nitrate reductase cytochrome c-type subunit, at 3,225,625 to 3,226,113
_3042
Psest_3043: Psest_3043 - periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family, at 3,226,124 to 3,226,720
_3043
Psest_3044: Psest_3044 - deoxycytidine triphosphate deaminase, at 3,226,823 to 3,227,389
_3044
Psest_3045: Psest_3045 - Cold shock proteins, at 3,227,720 to 3,227,929
_3045
Position (kb)
3226
3227 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3225.135 kb on + strand, within Psest_3041 at 3225.135 kb on + strand, within Psest_3041 at 3225.145 kb on - strand, within Psest_3041 at 3225.250 kb on - strand, within Psest_3041 at 3225.354 kb on + strand, within Psest_3041 at 3225.354 kb on + strand, within Psest_3041 at 3225.354 kb on + strand, within Psest_3041 at 3225.354 kb on + strand, within Psest_3041 at 3225.354 kb on + strand, within Psest_3041 at 3225.354 kb on + strand, within Psest_3041 at 3225.355 kb on - strand, within Psest_3041 at 3225.355 kb on - strand, within Psest_3041 at 3225.355 kb on - strand, within Psest_3041 at 3225.355 kb on - strand, within Psest_3041 at 3225.355 kb on - strand, within Psest_3041 at 3225.355 kb on - strand, within Psest_3041 at 3225.568 kb on - strand at 3225.638 kb on + strand at 3225.946 kb on + strand, within Psest_3042 at 3225.994 kb on + strand, within Psest_3042 at 3226.319 kb on + strand, within Psest_3043 at 3226.319 kb on + strand, within Psest_3043 at 3226.319 kb on + strand, within Psest_3043 at 3226.319 kb on + strand, within Psest_3043 at 3226.319 kb on + strand, within Psest_3043 at 3226.319 kb on + strand, within Psest_3043 at 3226.319 kb on + strand, within Psest_3043 at 3226.319 kb on + strand, within Psest_3043 at 3226.319 kb on + strand, within Psest_3043 at 3226.320 kb on - strand, within Psest_3043 at 3226.320 kb on - strand, within Psest_3043 at 3226.320 kb on - strand, within Psest_3043 at 3226.320 kb on - strand, within Psest_3043 at 3226.320 kb on - strand, within Psest_3043 at 3226.346 kb on + strand, within Psest_3043 at 3226.346 kb on + strand, within Psest_3043 at 3226.347 kb on - strand, within Psest_3043 at 3226.392 kb on + strand, within Psest_3043 at 3226.392 kb on + strand, within Psest_3043 at 3226.729 kb on + strand at 3226.729 kb on + strand at 3226.730 kb on - strand at 3226.730 kb on - strand at 3226.730 kb on - strand at 3226.860 kb on + strand at 3226.861 kb on - strand at 3226.861 kb on - strand at 3226.881 kb on + strand, within Psest_3044 at 3226.944 kb on + strand, within Psest_3044 at 3226.944 kb on + strand, within Psest_3044 at 3226.944 kb on + strand, within Psest_3044 at 3226.944 kb on + strand, within Psest_3044 at 3226.945 kb on - strand, within Psest_3044 at 3226.945 kb on - strand, within Psest_3044 at 3226.945 kb on - strand, within Psest_3044 at 3226.945 kb on - strand, within Psest_3044 at 3226.945 kb on - strand, within Psest_3044 at 3226.945 kb on - strand, within Psest_3044 at 3226.945 kb on - strand, within Psest_3044 at 3227.049 kb on + strand, within Psest_3044 at 3227.050 kb on - strand, within Psest_3044 at 3227.050 kb on - strand, within Psest_3044 at 3227.050 kb on - strand, within Psest_3044 at 3227.100 kb on + strand, within Psest_3044 at 3227.100 kb on + strand, within Psest_3044 at 3227.101 kb on - strand, within Psest_3044 at 3227.257 kb on - strand, within Psest_3044 at 3227.262 kb on + strand, within Psest_3044 at 3227.405 kb on + strand at 3227.406 kb on - strand at 3227.439 kb on - strand at 3227.467 kb on - strand at 3227.532 kb on + strand at 3227.532 kb on + strand at 3227.533 kb on - strand at 3227.560 kb on + strand at 3227.560 kb on + strand at 3227.561 kb on - strand at 3227.566 kb on + strand at 3227.602 kb on + strand at 3227.602 kb on + strand at 3227.603 kb on - strand at 3227.603 kb on - strand at 3227.610 kb on + strand at 3227.611 kb on - strand at 3227.611 kb on - strand at 3227.626 kb on + strand at 3227.642 kb on - strand at 3227.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM remove 3,225,135 + Psest_3041 0.81 +1.0 3,225,135 + Psest_3041 0.81 +0.1 3,225,145 - Psest_3041 0.81 +0.9 3,225,250 - Psest_3041 0.86 +0.1 3,225,354 + Psest_3041 0.90 -0.6 3,225,354 + Psest_3041 0.90 -0.5 3,225,354 + Psest_3041 0.90 -0.0 3,225,354 + Psest_3041 0.90 -0.1 3,225,354 + Psest_3041 0.90 -0.3 3,225,354 + Psest_3041 0.90 -1.8 3,225,355 - Psest_3041 0.90 +0.4 3,225,355 - Psest_3041 0.90 +0.5 3,225,355 - Psest_3041 0.90 -0.5 3,225,355 - Psest_3041 0.90 +1.1 3,225,355 - Psest_3041 0.90 +0.5 3,225,355 - Psest_3041 0.90 +1.0 3,225,568 - +0.5 3,225,638 + -1.1 3,225,946 + Psest_3042 0.66 -0.1 3,225,994 + Psest_3042 0.75 -1.4 3,226,319 + Psest_3043 0.33 +0.9 3,226,319 + Psest_3043 0.33 +1.3 3,226,319 + Psest_3043 0.33 +1.2 3,226,319 + Psest_3043 0.33 +1.1 3,226,319 + Psest_3043 0.33 +0.9 3,226,319 + Psest_3043 0.33 +1.9 3,226,319 + Psest_3043 0.33 +1.8 3,226,319 + Psest_3043 0.33 +1.2 3,226,319 + Psest_3043 0.33 +1.5 3,226,320 - Psest_3043 0.33 +0.3 3,226,320 - Psest_3043 0.33 -0.1 3,226,320 - Psest_3043 0.33 -0.4 3,226,320 - Psest_3043 0.33 -1.0 3,226,320 - Psest_3043 0.33 +0.1 3,226,346 + Psest_3043 0.37 +1.0 3,226,346 + Psest_3043 0.37 +1.3 3,226,347 - Psest_3043 0.37 +1.0 3,226,392 + Psest_3043 0.45 +1.6 3,226,392 + Psest_3043 0.45 +1.1 3,226,729 + +1.9 3,226,729 + +1.5 3,226,730 - +0.3 3,226,730 - -2.0 3,226,730 - +0.5 3,226,860 + -3.1 3,226,861 - +1.3 3,226,861 - +0.4 3,226,881 + Psest_3044 0.10 -1.6 3,226,944 + Psest_3044 0.21 -1.5 3,226,944 + Psest_3044 0.21 +0.0 3,226,944 + Psest_3044 0.21 -0.3 3,226,944 + Psest_3044 0.21 -3.1 3,226,945 - Psest_3044 0.22 +0.7 3,226,945 - Psest_3044 0.22 +0.1 3,226,945 - Psest_3044 0.22 +1.3 3,226,945 - Psest_3044 0.22 -0.1 3,226,945 - Psest_3044 0.22 +0.6 3,226,945 - Psest_3044 0.22 +0.3 3,226,945 - Psest_3044 0.22 +1.4 3,227,049 + Psest_3044 0.40 -1.2 3,227,050 - Psest_3044 0.40 -1.0 3,227,050 - Psest_3044 0.40 +0.4 3,227,050 - Psest_3044 0.40 -0.6 3,227,100 + Psest_3044 0.49 -1.6 3,227,100 + Psest_3044 0.49 -2.2 3,227,101 - Psest_3044 0.49 -2.9 3,227,257 - Psest_3044 0.77 +0.2 3,227,262 + Psest_3044 0.77 -0.8 3,227,405 + -2.7 3,227,406 - -1.2 3,227,439 - -1.8 3,227,467 - -0.7 3,227,532 + -2.3 3,227,532 + -1.1 3,227,533 - -1.9 3,227,560 + -2.6 3,227,560 + +0.3 3,227,561 - -2.1 3,227,566 + -1.2 3,227,602 + -2.0 3,227,602 + +0.6 3,227,603 - -0.7 3,227,603 - +0.4 3,227,610 + -1.3 3,227,611 - -1.6 3,227,611 - -1.8 3,227,626 + +0.0 3,227,642 - -0.8 3,227,688 - -1.2
Or see this region's nucleotide sequence