Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2970

Experiment: Def Benzethonium chloride 0.008 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2969 and Psest_2970 are separated by 34 nucleotidesPsest_2970 and Psest_2971 are separated by 79 nucleotidesPsest_2971 and Psest_2972 are separated by 113 nucleotides Psest_2969: Psest_2969 - Methylase of chemotaxis methyl-accepting proteins, at 3,164,454 to 3,165,278 _2969 Psest_2970: Psest_2970 - Chemotaxis signal transduction protein, at 3,165,313 to 3,166,245 _2970 Psest_2971: Psest_2971 - flagella basal body P-ring formation protein FlgA, at 3,166,325 to 3,167,077 _2971 Psest_2972: Psest_2972 - flagellar biosynthesis anti-sigma factor FlgM, at 3,167,191 to 3,167,520 _2972 Position (kb) 3165 3166 3167Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3164.319 kb on + strandat 3164.338 kb on + strandat 3164.348 kb on - strandat 3164.467 kb on + strandat 3164.467 kb on + strandat 3164.467 kb on + strandat 3164.467 kb on + strandat 3164.467 kb on + strandat 3164.467 kb on + strandat 3164.468 kb on - strandat 3164.468 kb on - strandat 3164.468 kb on - strandat 3164.468 kb on - strandat 3164.468 kb on - strandat 3164.501 kb on - strandat 3164.614 kb on + strand, within Psest_2969at 3164.614 kb on + strand, within Psest_2969at 3164.614 kb on + strand, within Psest_2969at 3164.615 kb on - strand, within Psest_2969at 3164.615 kb on - strand, within Psest_2969at 3164.615 kb on - strand, within Psest_2969at 3164.615 kb on - strand, within Psest_2969at 3164.665 kb on + strand, within Psest_2969at 3164.666 kb on - strand, within Psest_2969at 3164.666 kb on - strand, within Psest_2969at 3164.666 kb on - strand, within Psest_2969at 3164.666 kb on - strand, within Psest_2969at 3164.756 kb on - strand, within Psest_2969at 3164.903 kb on - strand, within Psest_2969at 3164.930 kb on - strand, within Psest_2969at 3165.196 kb on + strandat 3165.196 kb on + strandat 3165.196 kb on + strandat 3165.197 kb on - strandat 3165.197 kb on - strandat 3165.197 kb on - strandat 3165.197 kb on - strandat 3165.283 kb on - strandat 3165.444 kb on + strand, within Psest_2970at 3165.444 kb on + strand, within Psest_2970at 3165.444 kb on + strand, within Psest_2970at 3165.444 kb on + strand, within Psest_2970at 3165.444 kb on + strand, within Psest_2970at 3165.444 kb on + strand, within Psest_2970at 3165.444 kb on + strand, within Psest_2970at 3165.444 kb on + strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.445 kb on - strand, within Psest_2970at 3165.454 kb on + strand, within Psest_2970at 3165.454 kb on + strand, within Psest_2970at 3165.454 kb on + strand, within Psest_2970at 3165.454 kb on + strand, within Psest_2970at 3165.454 kb on + strand, within Psest_2970at 3165.454 kb on + strand, within Psest_2970at 3165.454 kb on + strand, within Psest_2970at 3165.454 kb on + strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.455 kb on - strand, within Psest_2970at 3165.456 kb on + strand, within Psest_2970at 3165.456 kb on + strand, within Psest_2970at 3165.456 kb on + strand, within Psest_2970at 3165.456 kb on + strand, within Psest_2970at 3165.456 kb on + strand, within Psest_2970at 3165.456 kb on + strand, within Psest_2970at 3165.456 kb on + strand, within Psest_2970at 3165.456 kb on + strand, within Psest_2970at 3165.457 kb on - strand, within Psest_2970at 3165.457 kb on - strand, within Psest_2970at 3165.457 kb on - strand, within Psest_2970at 3165.457 kb on - strand, within Psest_2970at 3165.457 kb on - strand, within Psest_2970at 3165.457 kb on - strand, within Psest_2970at 3165.457 kb on - strand, within Psest_2970at 3165.457 kb on - strand, within Psest_2970at 3165.457 kb on - strand, within Psest_2970at 3165.506 kb on + strand, within Psest_2970at 3165.507 kb on - strand, within Psest_2970at 3165.507 kb on - strand, within Psest_2970at 3165.507 kb on - strand, within Psest_2970at 3165.532 kb on - strand, within Psest_2970at 3165.597 kb on - strand, within Psest_2970at 3165.643 kb on + strand, within Psest_2970at 3165.644 kb on - strand, within Psest_2970at 3165.645 kb on + strand, within Psest_2970at 3165.646 kb on - strand, within Psest_2970at 3165.646 kb on - strand, within Psest_2970at 3165.646 kb on - strand, within Psest_2970at 3165.646 kb on - strand, within Psest_2970at 3165.851 kb on + strand, within Psest_2970at 3165.956 kb on + strand, within Psest_2970at 3165.956 kb on + strand, within Psest_2970at 3165.956 kb on + strand, within Psest_2970at 3165.957 kb on - strand, within Psest_2970at 3165.957 kb on - strand, within Psest_2970at 3165.957 kb on - strand, within Psest_2970at 3165.957 kb on - strand, within Psest_2970at 3165.957 kb on - strand, within Psest_2970at 3166.041 kb on + strand, within Psest_2970at 3166.042 kb on - strand, within Psest_2970at 3166.042 kb on - strand, within Psest_2970at 3166.042 kb on - strand, within Psest_2970at 3166.042 kb on - strand, within Psest_2970at 3166.135 kb on + strand, within Psest_2970at 3166.135 kb on + strand, within Psest_2970at 3166.136 kb on - strand, within Psest_2970at 3166.148 kb on + strand, within Psest_2970at 3166.234 kb on + strandat 3166.235 kb on - strandat 3166.272 kb on - strandat 3166.272 kb on - strandat 3166.272 kb on - strandat 3166.272 kb on - strandat 3166.289 kb on + strandat 3166.292 kb on + strandat 3166.293 kb on - strandat 3166.336 kb on + strandat 3166.336 kb on + strandat 3166.337 kb on - strandat 3166.337 kb on - strandat 3166.450 kb on + strand, within Psest_2971at 3166.485 kb on + strand, within Psest_2971at 3166.494 kb on - strand, within Psest_2971at 3166.494 kb on - strand, within Psest_2971at 3166.494 kb on - strand, within Psest_2971at 3166.494 kb on - strand, within Psest_2971at 3166.497 kb on + strand, within Psest_2971at 3166.497 kb on + strand, within Psest_2971at 3166.497 kb on + strand, within Psest_2971at 3166.498 kb on - strand, within Psest_2971at 3166.498 kb on - strand, within Psest_2971at 3166.498 kb on - strand, within Psest_2971at 3166.498 kb on - strand, within Psest_2971at 3166.726 kb on - strand, within Psest_2971at 3166.821 kb on + strand, within Psest_2971at 3166.821 kb on + strand, within Psest_2971at 3166.822 kb on - strand, within Psest_2971at 3166.822 kb on - strand, within Psest_2971at 3166.899 kb on + strand, within Psest_2971at 3167.029 kb on - strandat 3167.075 kb on + strandat 3167.075 kb on + strandat 3167.075 kb on + strandat 3167.075 kb on + strandat 3167.075 kb on + strandat 3167.076 kb on - strandat 3167.076 kb on - strandat 3167.076 kb on - strandat 3167.076 kb on - strandat 3167.076 kb on - strandat 3167.076 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
remove
3,164,319 + -0.2
3,164,338 + -0.9
3,164,348 - +0.1
3,164,467 + -1.0
3,164,467 + -0.4
3,164,467 + +0.2
3,164,467 + -1.1
3,164,467 + -0.9
3,164,467 + -0.9
3,164,468 - -0.7
3,164,468 - -0.3
3,164,468 - -1.6
3,164,468 - -0.4
3,164,468 - -0.6
3,164,501 - -1.6
3,164,614 + Psest_2969 0.19 -0.5
3,164,614 + Psest_2969 0.19 -1.0
3,164,614 + Psest_2969 0.19 -0.1
3,164,615 - Psest_2969 0.20 +0.5
3,164,615 - Psest_2969 0.20 +1.1
3,164,615 - Psest_2969 0.20 +0.3
3,164,615 - Psest_2969 0.20 +0.8
3,164,665 + Psest_2969 0.26 -1.1
3,164,666 - Psest_2969 0.26 -0.1
3,164,666 - Psest_2969 0.26 +0.1
3,164,666 - Psest_2969 0.26 -0.4
3,164,666 - Psest_2969 0.26 -0.8
3,164,756 - Psest_2969 0.37 -3.2
3,164,903 - Psest_2969 0.54 -1.2
3,164,930 - Psest_2969 0.58 -0.7
3,165,196 + -2.2
3,165,196 + +0.0
3,165,196 + -1.8
3,165,197 - +0.9
3,165,197 - -3.0
3,165,197 - -0.6
3,165,197 - -0.0
3,165,283 - +0.5
3,165,444 + Psest_2970 0.14 -1.1
3,165,444 + Psest_2970 0.14 -2.2
3,165,444 + Psest_2970 0.14 +0.0
3,165,444 + Psest_2970 0.14 +0.6
3,165,444 + Psest_2970 0.14 -1.0
3,165,444 + Psest_2970 0.14 -0.4
3,165,444 + Psest_2970 0.14 -1.3
3,165,444 + Psest_2970 0.14 -1.0
3,165,445 - Psest_2970 0.14 +0.9
3,165,445 - Psest_2970 0.14 +0.6
3,165,445 - Psest_2970 0.14 +0.6
3,165,445 - Psest_2970 0.14 +0.5
3,165,445 - Psest_2970 0.14 -2.0
3,165,445 - Psest_2970 0.14 -2.6
3,165,445 - Psest_2970 0.14 +0.3
3,165,445 - Psest_2970 0.14 +0.9
3,165,445 - Psest_2970 0.14 +0.7
3,165,445 - Psest_2970 0.14 +0.7
3,165,445 - Psest_2970 0.14 -0.8
3,165,454 + Psest_2970 0.15 -2.3
3,165,454 + Psest_2970 0.15 +0.5
3,165,454 + Psest_2970 0.15 -1.3
3,165,454 + Psest_2970 0.15 -0.4
3,165,454 + Psest_2970 0.15 +0.4
3,165,454 + Psest_2970 0.15 -1.4
3,165,454 + Psest_2970 0.15 -2.6
3,165,454 + Psest_2970 0.15 -2.1
3,165,455 - Psest_2970 0.15 +0.2
3,165,455 - Psest_2970 0.15 -0.6
3,165,455 - Psest_2970 0.15 +0.3
3,165,455 - Psest_2970 0.15 +1.2
3,165,455 - Psest_2970 0.15 +0.0
3,165,455 - Psest_2970 0.15 -0.1
3,165,455 - Psest_2970 0.15 +0.5
3,165,455 - Psest_2970 0.15 +1.3
3,165,455 - Psest_2970 0.15 +0.6
3,165,455 - Psest_2970 0.15 +0.2
3,165,455 - Psest_2970 0.15 +0.0
3,165,455 - Psest_2970 0.15 +0.2
3,165,455 - Psest_2970 0.15 +0.5
3,165,455 - Psest_2970 0.15 -0.9
3,165,455 - Psest_2970 0.15 +0.8
3,165,455 - Psest_2970 0.15 +0.4
3,165,455 - Psest_2970 0.15 +0.8
3,165,456 + Psest_2970 0.15 -1.4
3,165,456 + Psest_2970 0.15 -0.3
3,165,456 + Psest_2970 0.15 -2.3
3,165,456 + Psest_2970 0.15 -0.4
3,165,456 + Psest_2970 0.15 -1.3
3,165,456 + Psest_2970 0.15 -1.7
3,165,456 + Psest_2970 0.15 -0.0
3,165,456 + Psest_2970 0.15 -0.9
3,165,457 - Psest_2970 0.15 +0.4
3,165,457 - Psest_2970 0.15 +0.5
3,165,457 - Psest_2970 0.15 +0.2
3,165,457 - Psest_2970 0.15 +0.6
3,165,457 - Psest_2970 0.15 -0.6
3,165,457 - Psest_2970 0.15 +0.7
3,165,457 - Psest_2970 0.15 +1.0
3,165,457 - Psest_2970 0.15 +1.0
3,165,457 - Psest_2970 0.15 +1.7
3,165,506 + Psest_2970 0.21 -1.8
3,165,507 - Psest_2970 0.21 +0.5
3,165,507 - Psest_2970 0.21 +1.3
3,165,507 - Psest_2970 0.21 +0.7
3,165,532 - Psest_2970 0.23 +0.1
3,165,597 - Psest_2970 0.30 +0.4
3,165,643 + Psest_2970 0.35 -0.6
3,165,644 - Psest_2970 0.35 -1.3
3,165,645 + Psest_2970 0.36 -1.3
3,165,646 - Psest_2970 0.36 -0.1
3,165,646 - Psest_2970 0.36 +1.4
3,165,646 - Psest_2970 0.36 +0.2
3,165,646 - Psest_2970 0.36 +0.1
3,165,851 + Psest_2970 0.58 -1.6
3,165,956 + Psest_2970 0.69 -0.4
3,165,956 + Psest_2970 0.69 -1.3
3,165,956 + Psest_2970 0.69 -0.7
3,165,957 - Psest_2970 0.69 -0.4
3,165,957 - Psest_2970 0.69 +0.1
3,165,957 - Psest_2970 0.69 -0.7
3,165,957 - Psest_2970 0.69 -0.1
3,165,957 - Psest_2970 0.69 -0.1
3,166,041 + Psest_2970 0.78 -0.3
3,166,042 - Psest_2970 0.78 -0.0
3,166,042 - Psest_2970 0.78 +0.3
3,166,042 - Psest_2970 0.78 +0.5
3,166,042 - Psest_2970 0.78 +0.5
3,166,135 + Psest_2970 0.88 -3.0
3,166,135 + Psest_2970 0.88 -1.1
3,166,136 - Psest_2970 0.88 -0.7
3,166,148 + Psest_2970 0.89 -1.1
3,166,234 + -0.5
3,166,235 - -0.2
3,166,272 - -0.1
3,166,272 - +0.7
3,166,272 - +0.6
3,166,272 - -0.2
3,166,289 + -1.4
3,166,292 + -1.2
3,166,293 - -0.0
3,166,336 + +0.2
3,166,336 + -0.2
3,166,337 - +0.7
3,166,337 - -1.4
3,166,450 + Psest_2971 0.17 +2.0
3,166,485 + Psest_2971 0.21 +0.5
3,166,494 - Psest_2971 0.22 +2.8
3,166,494 - Psest_2971 0.22 +0.1
3,166,494 - Psest_2971 0.22 +0.1
3,166,494 - Psest_2971 0.22 -1.0
3,166,497 + Psest_2971 0.23 -0.2
3,166,497 + Psest_2971 0.23 -0.5
3,166,497 + Psest_2971 0.23 +0.4
3,166,498 - Psest_2971 0.23 +0.1
3,166,498 - Psest_2971 0.23 +1.4
3,166,498 - Psest_2971 0.23 -0.1
3,166,498 - Psest_2971 0.23 +0.3
3,166,726 - Psest_2971 0.53 +0.1
3,166,821 + Psest_2971 0.66 -0.5
3,166,821 + Psest_2971 0.66 -0.5
3,166,822 - Psest_2971 0.66 -0.7
3,166,822 - Psest_2971 0.66 +0.4
3,166,899 + Psest_2971 0.76 +0.2
3,167,029 - +0.6
3,167,075 + -0.0
3,167,075 + +0.7
3,167,075 + -0.0
3,167,075 + +0.1
3,167,075 + -0.2
3,167,076 - -1.3
3,167,076 - -0.1
3,167,076 - +0.2
3,167,076 - -1.5
3,167,076 - +0.1
3,167,076 - +0.8

Or see this region's nucleotide sequence