Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2813

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2811 and Psest_2812 overlap by 4 nucleotidesPsest_2812 and Psest_2813 are separated by 184 nucleotidesPsest_2813 and Psest_2814 are separated by 38 nucleotides Psest_2811: Psest_2811 - Uncharacterized conserved protein, at 2,999,855 to 3,000,895 _2811 Psest_2812: Psest_2812 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 3,000,892 to 3,001,365 _2812 Psest_2813: Psest_2813 - Predicted transcriptional regulators, at 3,001,550 to 3,001,852 _2813 Psest_2814: Psest_2814 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 3,001,891 to 3,002,940 _2814 Position (kb) 3001 3002Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3000.669 kb on + strand, within Psest_2811at 3000.669 kb on + strand, within Psest_2811at 3000.670 kb on - strand, within Psest_2811at 3000.837 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.366 kb on - strandat 3001.403 kb on + strandat 3001.403 kb on + strandat 3001.404 kb on - strandat 3001.509 kb on - strandat 3001.511 kb on - strandat 3001.530 kb on + strandat 3001.530 kb on + strandat 3001.531 kb on - strandat 3001.531 kb on - strandat 3001.637 kb on + strand, within Psest_2813at 3001.674 kb on + strand, within Psest_2813at 3001.674 kb on + strand, within Psest_2813at 3001.674 kb on + strand, within Psest_2813at 3001.674 kb on + strand, within Psest_2813at 3001.674 kb on + strand, within Psest_2813at 3001.674 kb on + strand, within Psest_2813at 3001.674 kb on + strand, within Psest_2813at 3001.674 kb on + strand, within Psest_2813at 3001.674 kb on + strand, within Psest_2813at 3001.674 kb on + strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.675 kb on - strand, within Psest_2813at 3001.890 kb on + strandat 3002.014 kb on + strand, within Psest_2814at 3002.014 kb on + strand, within Psest_2814at 3002.015 kb on - strand, within Psest_2814at 3002.015 kb on - strand, within Psest_2814at 3002.018 kb on - strand, within Psest_2814at 3002.018 kb on - strand, within Psest_2814at 3002.103 kb on + strand, within Psest_2814at 3002.104 kb on - strand, within Psest_2814at 3002.105 kb on + strand, within Psest_2814at 3002.105 kb on + strand, within Psest_2814at 3002.106 kb on - strand, within Psest_2814at 3002.106 kb on - strand, within Psest_2814at 3002.106 kb on - strand, within Psest_2814at 3002.180 kb on + strand, within Psest_2814at 3002.195 kb on + strand, within Psest_2814at 3002.195 kb on + strand, within Psest_2814at 3002.195 kb on + strand, within Psest_2814at 3002.195 kb on + strand, within Psest_2814at 3002.195 kb on + strand, within Psest_2814at 3002.196 kb on - strand, within Psest_2814at 3002.218 kb on + strand, within Psest_2814at 3002.218 kb on + strand, within Psest_2814at 3002.219 kb on - strand, within Psest_2814at 3002.219 kb on - strand, within Psest_2814at 3002.219 kb on - strand, within Psest_2814at 3002.219 kb on - strand, within Psest_2814at 3002.300 kb on - strand, within Psest_2814at 3002.353 kb on + strand, within Psest_2814at 3002.422 kb on + strand, within Psest_2814at 3002.561 kb on + strand, within Psest_2814at 3002.626 kb on + strand, within Psest_2814at 3002.627 kb on - strand, within Psest_2814at 3002.665 kb on - strand, within Psest_2814at 3002.734 kb on + strand, within Psest_2814at 3002.734 kb on + strand, within Psest_2814at 3002.734 kb on + strand, within Psest_2814at 3002.734 kb on + strand, within Psest_2814at 3002.734 kb on + strand, within Psest_2814at 3002.734 kb on + strand, within Psest_2814at 3002.735 kb on - strand, within Psest_2814at 3002.735 kb on - strand, within Psest_2814at 3002.735 kb on - strand, within Psest_2814at 3002.822 kb on - strand, within Psest_2814

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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3,000,669 + Psest_2811 0.78 +1.3
3,000,669 + Psest_2811 0.78 +0.8
3,000,670 - Psest_2811 0.78 +0.9
3,000,837 - +1.3
3,001,366 - -0.1
3,001,366 - -0.5
3,001,366 - -0.9
3,001,366 - -2.2
3,001,366 - -1.4
3,001,366 - -0.7
3,001,366 - -2.2
3,001,366 - -1.6
3,001,366 - -0.4
3,001,366 - -1.2
3,001,366 - -2.3
3,001,366 - -3.1
3,001,366 - -1.1
3,001,366 - -1.8
3,001,403 + +0.2
3,001,403 + -0.8
3,001,404 - -1.1
3,001,509 - -0.2
3,001,511 - -0.1
3,001,530 + +0.3
3,001,530 + -0.5
3,001,531 - +0.9
3,001,531 - +0.0
3,001,637 + Psest_2813 0.29 +1.3
3,001,674 + Psest_2813 0.41 +1.0
3,001,674 + Psest_2813 0.41 +0.4
3,001,674 + Psest_2813 0.41 -1.7
3,001,674 + Psest_2813 0.41 +0.9
3,001,674 + Psest_2813 0.41 +0.1
3,001,674 + Psest_2813 0.41 +0.9
3,001,674 + Psest_2813 0.41 -1.0
3,001,674 + Psest_2813 0.41 +1.0
3,001,674 + Psest_2813 0.41 +1.0
3,001,674 + Psest_2813 0.41 +1.1
3,001,675 - Psest_2813 0.41 -0.7
3,001,675 - Psest_2813 0.41 +0.2
3,001,675 - Psest_2813 0.41 +1.0
3,001,675 - Psest_2813 0.41 -1.1
3,001,675 - Psest_2813 0.41 -0.0
3,001,675 - Psest_2813 0.41 -0.8
3,001,675 - Psest_2813 0.41 -0.0
3,001,675 - Psest_2813 0.41 -0.8
3,001,675 - Psest_2813 0.41 -0.3
3,001,675 - Psest_2813 0.41 +0.5
3,001,675 - Psest_2813 0.41 +0.5
3,001,675 - Psest_2813 0.41 +1.8
3,001,675 - Psest_2813 0.41 +0.6
3,001,890 + -0.5
3,002,014 + Psest_2814 0.12 +0.5
3,002,014 + Psest_2814 0.12 -0.3
3,002,015 - Psest_2814 0.12 +0.3
3,002,015 - Psest_2814 0.12 +0.6
3,002,018 - Psest_2814 0.12 -0.7
3,002,018 - Psest_2814 0.12 -0.1
3,002,103 + Psest_2814 0.20 +1.7
3,002,104 - Psest_2814 0.20 +0.5
3,002,105 + Psest_2814 0.20 +0.6
3,002,105 + Psest_2814 0.20 +0.2
3,002,106 - Psest_2814 0.20 -0.6
3,002,106 - Psest_2814 0.20 +0.9
3,002,106 - Psest_2814 0.20 +0.5
3,002,180 + Psest_2814 0.28 +0.5
3,002,195 + Psest_2814 0.29 +0.4
3,002,195 + Psest_2814 0.29 +0.8
3,002,195 + Psest_2814 0.29 -0.9
3,002,195 + Psest_2814 0.29 +1.6
3,002,195 + Psest_2814 0.29 +0.9
3,002,196 - Psest_2814 0.29 -1.0
3,002,218 + Psest_2814 0.31 +0.7
3,002,218 + Psest_2814 0.31 +0.8
3,002,219 - Psest_2814 0.31 +0.7
3,002,219 - Psest_2814 0.31 +0.6
3,002,219 - Psest_2814 0.31 +1.4
3,002,219 - Psest_2814 0.31 +0.9
3,002,300 - Psest_2814 0.39 +0.4
3,002,353 + Psest_2814 0.44 +1.1
3,002,422 + Psest_2814 0.51 +1.3
3,002,561 + Psest_2814 0.64 +1.2
3,002,626 + Psest_2814 0.70 +1.6
3,002,627 - Psest_2814 0.70 -0.7
3,002,665 - Psest_2814 0.74 +0.1
3,002,734 + Psest_2814 0.80 +1.0
3,002,734 + Psest_2814 0.80 +1.8
3,002,734 + Psest_2814 0.80 +2.6
3,002,734 + Psest_2814 0.80 +2.0
3,002,734 + Psest_2814 0.80 +1.9
3,002,734 + Psest_2814 0.80 +1.5
3,002,735 - Psest_2814 0.80 -0.8
3,002,735 - Psest_2814 0.80 +0.3
3,002,735 - Psest_2814 0.80 -0.9
3,002,822 - Psest_2814 0.89 +0.0

Or see this region's nucleotide sequence