Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2712

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2710 and Psest_2711 are separated by 193 nucleotidesPsest_2711 and Psest_2712 are separated by 39 nucleotidesPsest_2712 and Psest_2713 are separated by 225 nucleotidesPsest_2713 and Psest_2714 are separated by 39 nucleotides Psest_2710: Psest_2710 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 2,900,720 to 2,901,904 _2710 Psest_2711: Psest_2711 - PilZ domain., at 2,902,098 to 2,902,397 _2711 Psest_2712: Psest_2712 - Surface lipoprotein, at 2,902,437 to 2,903,135 _2712 Psest_2713: Psest_2713 - hypothetical protein, at 2,903,361 to 2,903,627 _2713 Psest_2714: Psest_2714 - 7-cyano-7-deazaguanine reductase, at 2,903,667 to 2,904,497 _2714 Position (kb) 2902 2903 2904Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2901.899 kb on - strandat 2901.911 kb on - strandat 2901.911 kb on - strandat 2901.973 kb on - strandat 2902.002 kb on - strandat 2902.059 kb on + strandat 2902.059 kb on + strandat 2902.061 kb on + strandat 2902.081 kb on + strandat 2902.081 kb on + strandat 2902.081 kb on + strandat 2902.081 kb on + strandat 2902.081 kb on + strandat 2902.081 kb on + strandat 2902.081 kb on + strandat 2902.081 kb on + strandat 2902.081 kb on + strandat 2902.081 kb on + strandat 2902.082 kb on - strandat 2902.082 kb on - strandat 2902.083 kb on + strandat 2902.083 kb on + strandat 2902.083 kb on + strandat 2902.083 kb on + strandat 2902.083 kb on + strandat 2902.083 kb on + strandat 2902.083 kb on + strandat 2902.119 kb on + strandat 2902.120 kb on - strandat 2902.139 kb on + strand, within Psest_2711at 2902.185 kb on - strand, within Psest_2711at 2902.213 kb on + strand, within Psest_2711at 2902.214 kb on - strand, within Psest_2711at 2902.406 kb on + strandat 2902.406 kb on + strandat 2902.406 kb on + strandat 2902.407 kb on - strandat 2902.407 kb on - strandat 2902.408 kb on + strandat 2902.408 kb on + strandat 2902.408 kb on + strandat 2902.408 kb on + strandat 2902.408 kb on + strandat 2902.408 kb on + strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.409 kb on - strandat 2902.671 kb on - strand, within Psest_2712at 2902.671 kb on - strand, within Psest_2712at 2902.671 kb on - strand, within Psest_2712at 2902.671 kb on - strand, within Psest_2712at 2902.699 kb on + strand, within Psest_2712at 2902.700 kb on - strand, within Psest_2712at 2902.914 kb on - strand, within Psest_2712at 2902.981 kb on + strand, within Psest_2712at 2902.981 kb on + strand, within Psest_2712at 2902.981 kb on + strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2902.982 kb on - strand, within Psest_2712at 2903.150 kb on - strandat 2903.150 kb on - strandat 2903.150 kb on - strandat 2903.153 kb on + strandat 2903.154 kb on - strandat 2903.154 kb on - strandat 2903.190 kb on + strandat 2903.190 kb on + strandat 2903.190 kb on + strandat 2903.192 kb on + strandat 2903.192 kb on + strandat 2903.192 kb on + strandat 2903.192 kb on + strandat 2903.193 kb on - strandat 2903.193 kb on - strandat 2903.240 kb on + strandat 2903.240 kb on + strandat 2903.240 kb on + strandat 2903.240 kb on + strandat 2903.240 kb on + strandat 2903.241 kb on - strandat 2903.241 kb on - strandat 2903.241 kb on - strandat 2903.452 kb on + strand, within Psest_2713at 2903.453 kb on - strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.456 kb on + strand, within Psest_2713at 2903.457 kb on - strand, within Psest_2713at 2903.457 kb on - strand, within Psest_2713at 2903.457 kb on - strand, within Psest_2713at 2903.752 kb on + strand, within Psest_2714at 2903.788 kb on - strand, within Psest_2714at 2904.035 kb on - strand, within Psest_2714

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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2,901,899 - -1.0
2,901,911 - +0.8
2,901,911 - +0.3
2,901,973 - +0.1
2,902,002 - +0.0
2,902,059 + -0.7
2,902,059 + -1.3
2,902,061 + -1.2
2,902,081 + -1.2
2,902,081 + -1.3
2,902,081 + -0.5
2,902,081 + -1.7
2,902,081 + +1.0
2,902,081 + -1.3
2,902,081 + -2.7
2,902,081 + -3.0
2,902,081 + -1.3
2,902,081 + -1.0
2,902,082 - -0.9
2,902,082 - -0.7
2,902,083 + -0.4
2,902,083 + -0.9
2,902,083 + -0.8
2,902,083 + -2.2
2,902,083 + -1.2
2,902,083 + -1.1
2,902,083 + -1.3
2,902,119 + -0.9
2,902,120 - +0.4
2,902,139 + Psest_2711 0.14 -1.3
2,902,185 - Psest_2711 0.29 -0.5
2,902,213 + Psest_2711 0.38 -1.0
2,902,214 - Psest_2711 0.39 -0.3
2,902,406 + +0.1
2,902,406 + -1.4
2,902,406 + -2.1
2,902,407 - +0.1
2,902,407 - -0.1
2,902,408 + -1.6
2,902,408 + -1.3
2,902,408 + -0.2
2,902,408 + -1.1
2,902,408 + -0.8
2,902,408 + -1.6
2,902,409 - +0.5
2,902,409 - +0.0
2,902,409 - -0.2
2,902,409 - -0.0
2,902,409 - +0.2
2,902,409 - -1.4
2,902,409 - +0.4
2,902,409 - +0.6
2,902,409 - -0.1
2,902,409 - -0.1
2,902,409 - +0.6
2,902,409 - +0.2
2,902,409 - -0.5
2,902,671 - Psest_2712 0.33 -3.1
2,902,671 - Psest_2712 0.33 -2.6
2,902,671 - Psest_2712 0.33 -1.4
2,902,671 - Psest_2712 0.33 -3.4
2,902,699 + Psest_2712 0.37 -1.9
2,902,700 - Psest_2712 0.38 -3.4
2,902,914 - Psest_2712 0.68 -2.1
2,902,981 + Psest_2712 0.78 -3.0
2,902,981 + Psest_2712 0.78 -4.6
2,902,981 + Psest_2712 0.78 -2.2
2,902,982 - Psest_2712 0.78 -3.4
2,902,982 - Psest_2712 0.78 -3.1
2,902,982 - Psest_2712 0.78 -1.9
2,902,982 - Psest_2712 0.78 -3.3
2,902,982 - Psest_2712 0.78 -2.4
2,902,982 - Psest_2712 0.78 -1.6
2,902,982 - Psest_2712 0.78 -3.9
2,903,150 - +1.6
2,903,150 - -1.5
2,903,150 - +1.5
2,903,153 + -3.1
2,903,154 - +2.2
2,903,154 - +0.2
2,903,190 + -3.9
2,903,190 + -3.7
2,903,190 + -4.0
2,903,192 + -1.9
2,903,192 + -1.0
2,903,192 + -1.6
2,903,192 + -1.0
2,903,193 - +2.2
2,903,193 - +2.8
2,903,240 + -0.7
2,903,240 + -1.2
2,903,240 + -1.9
2,903,240 + -2.4
2,903,240 + -0.6
2,903,241 - +1.5
2,903,241 - +2.2
2,903,241 - +2.1
2,903,452 + Psest_2713 0.34 -1.4
2,903,453 - Psest_2713 0.34 +2.0
2,903,456 + Psest_2713 0.36 -0.8
2,903,456 + Psest_2713 0.36 -0.1
2,903,456 + Psest_2713 0.36 +0.4
2,903,456 + Psest_2713 0.36 -1.4
2,903,456 + Psest_2713 0.36 -0.3
2,903,456 + Psest_2713 0.36 +0.6
2,903,456 + Psest_2713 0.36 -0.4
2,903,456 + Psest_2713 0.36 -0.5
2,903,457 - Psest_2713 0.36 +0.8
2,903,457 - Psest_2713 0.36 +2.1
2,903,457 - Psest_2713 0.36 +1.8
2,903,752 + Psest_2714 0.10 +0.9
2,903,788 - Psest_2714 0.15 +1.5
2,904,035 - Psest_2714 0.44 +0.8

Or see this region's nucleotide sequence