Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2453

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2452 and Psest_2453 are separated by 1 nucleotidesPsest_2453 and Psest_2454 are separated by 78 nucleotidesPsest_2454 and Psest_2455 are separated by 41 nucleotides Psest_2452: Psest_2452 - Cytochrome c bacterial./Doubled CXXCH motif (Paired_CXXCH_1)., at 2,620,879 to 2,622,465 _2452 Psest_2453: Psest_2453 - Thiosulfate reductase cytochrome B subunit (membrane anchoring protein), at 2,622,467 to 2,623,063 _2453 Psest_2454: Psest_2454 - Rhodanese-related sulfurtransferase, at 2,623,142 to 2,623,690 _2454 Psest_2455: Psest_2455 - Acyl-CoA thioesterase, at 2,623,732 to 2,624,529 _2455 Position (kb) 2622 2623 2624Strain fitness (log2 ratio) -3 -2 -1 0 1at 2621.504 kb on + strand, within Psest_2452at 2621.504 kb on + strand, within Psest_2452at 2621.504 kb on + strand, within Psest_2452at 2621.504 kb on + strand, within Psest_2452at 2621.505 kb on - strand, within Psest_2452at 2621.505 kb on - strand, within Psest_2452at 2621.505 kb on - strand, within Psest_2452at 2621.505 kb on - strand, within Psest_2452at 2621.505 kb on - strand, within Psest_2452at 2621.754 kb on + strand, within Psest_2452at 2621.755 kb on - strand, within Psest_2452at 2621.755 kb on - strand, within Psest_2452at 2621.785 kb on - strand, within Psest_2452at 2621.842 kb on + strand, within Psest_2452at 2621.916 kb on - strand, within Psest_2452at 2621.916 kb on - strand, within Psest_2452at 2621.926 kb on + strand, within Psest_2452at 2621.926 kb on + strand, within Psest_2452at 2621.926 kb on + strand, within Psest_2452at 2621.926 kb on + strand, within Psest_2452at 2621.927 kb on - strand, within Psest_2452at 2621.927 kb on - strand, within Psest_2452at 2621.927 kb on - strand, within Psest_2452at 2621.927 kb on - strand, within Psest_2452at 2621.949 kb on + strand, within Psest_2452at 2621.953 kb on + strand, within Psest_2452at 2621.953 kb on + strand, within Psest_2452at 2621.953 kb on + strand, within Psest_2452at 2621.953 kb on + strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2621.954 kb on - strand, within Psest_2452at 2622.098 kb on + strand, within Psest_2452at 2622.142 kb on + strand, within Psest_2452at 2622.199 kb on + strand, within Psest_2452at 2622.252 kb on + strand, within Psest_2452at 2622.482 kb on + strandat 2622.483 kb on - strandat 2622.483 kb on - strandat 2622.732 kb on - strand, within Psest_2453at 2622.735 kb on - strand, within Psest_2453at 2622.735 kb on - strand, within Psest_2453at 2622.818 kb on + strand, within Psest_2453at 2622.818 kb on + strand, within Psest_2453at 2622.819 kb on - strand, within Psest_2453at 2622.819 kb on - strand, within Psest_2453at 2622.819 kb on - strand, within Psest_2453at 2622.819 kb on - strand, within Psest_2453at 2622.819 kb on - strand, within Psest_2453at 2622.872 kb on + strand, within Psest_2453at 2622.872 kb on + strand, within Psest_2453at 2622.872 kb on + strand, within Psest_2453at 2622.873 kb on - strand, within Psest_2453at 2622.873 kb on - strand, within Psest_2453at 2622.944 kb on - strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.989 kb on + strand, within Psest_2453at 2622.990 kb on - strand, within Psest_2453at 2623.083 kb on - strandat 2623.096 kb on + strandat 2623.096 kb on + strandat 2623.097 kb on - strandat 2623.098 kb on + strandat 2623.116 kb on + strandat 2623.116 kb on + strandat 2623.117 kb on - strandat 2623.229 kb on + strand, within Psest_2454at 2623.338 kb on - strand, within Psest_2454at 2623.547 kb on + strand, within Psest_2454at 2623.547 kb on + strand, within Psest_2454at 2623.671 kb on - strandat 2623.847 kb on + strand, within Psest_2455at 2623.847 kb on + strand, within Psest_2455at 2624.055 kb on + strand, within Psest_2455at 2624.055 kb on + strand, within Psest_2455at 2624.055 kb on + strand, within Psest_2455at 2624.055 kb on + strand, within Psest_2455at 2624.055 kb on + strand, within Psest_2455at 2624.056 kb on - strand, within Psest_2455at 2624.056 kb on - strand, within Psest_2455at 2624.056 kb on - strand, within Psest_2455

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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2,621,504 + Psest_2452 0.39 +0.9
2,621,504 + Psest_2452 0.39 +0.7
2,621,504 + Psest_2452 0.39 -1.7
2,621,504 + Psest_2452 0.39 +1.4
2,621,505 - Psest_2452 0.39 +0.4
2,621,505 - Psest_2452 0.39 -0.1
2,621,505 - Psest_2452 0.39 +0.1
2,621,505 - Psest_2452 0.39 +0.4
2,621,505 - Psest_2452 0.39 +0.1
2,621,754 + Psest_2452 0.55 -0.0
2,621,755 - Psest_2452 0.55 -0.7
2,621,755 - Psest_2452 0.55 +1.1
2,621,785 - Psest_2452 0.57 +1.2
2,621,842 + Psest_2452 0.61 -0.1
2,621,916 - Psest_2452 0.65 +0.7
2,621,916 - Psest_2452 0.65 +0.4
2,621,926 + Psest_2452 0.66 -0.5
2,621,926 + Psest_2452 0.66 -0.3
2,621,926 + Psest_2452 0.66 +1.7
2,621,926 + Psest_2452 0.66 -0.0
2,621,927 - Psest_2452 0.66 +0.2
2,621,927 - Psest_2452 0.66 +0.2
2,621,927 - Psest_2452 0.66 -0.8
2,621,927 - Psest_2452 0.66 +0.6
2,621,949 + Psest_2452 0.67 -1.4
2,621,953 + Psest_2452 0.68 -0.2
2,621,953 + Psest_2452 0.68 +0.2
2,621,953 + Psest_2452 0.68 -0.3
2,621,953 + Psest_2452 0.68 -0.4
2,621,954 - Psest_2452 0.68 -0.7
2,621,954 - Psest_2452 0.68 +1.1
2,621,954 - Psest_2452 0.68 +0.2
2,621,954 - Psest_2452 0.68 +0.6
2,621,954 - Psest_2452 0.68 +1.7
2,621,954 - Psest_2452 0.68 +0.5
2,621,954 - Psest_2452 0.68 +0.5
2,621,954 - Psest_2452 0.68 +1.1
2,621,954 - Psest_2452 0.68 +0.3
2,621,954 - Psest_2452 0.68 -0.2
2,621,954 - Psest_2452 0.68 +0.3
2,621,954 - Psest_2452 0.68 -0.0
2,621,954 - Psest_2452 0.68 +1.2
2,622,098 + Psest_2452 0.77 -0.5
2,622,142 + Psest_2452 0.80 -0.4
2,622,199 + Psest_2452 0.83 -1.5
2,622,252 + Psest_2452 0.87 +0.4
2,622,482 + -0.9
2,622,483 - -0.4
2,622,483 - +0.9
2,622,732 - Psest_2453 0.44 +0.7
2,622,735 - Psest_2453 0.45 -0.4
2,622,735 - Psest_2453 0.45 -1.2
2,622,818 + Psest_2453 0.59 -1.4
2,622,818 + Psest_2453 0.59 -2.8
2,622,819 - Psest_2453 0.59 +0.2
2,622,819 - Psest_2453 0.59 -0.2
2,622,819 - Psest_2453 0.59 -0.1
2,622,819 - Psest_2453 0.59 -0.4
2,622,819 - Psest_2453 0.59 +0.6
2,622,872 + Psest_2453 0.68 -0.5
2,622,872 + Psest_2453 0.68 +1.4
2,622,872 + Psest_2453 0.68 -0.3
2,622,873 - Psest_2453 0.68 -0.2
2,622,873 - Psest_2453 0.68 +0.8
2,622,944 - Psest_2453 0.80 -0.6
2,622,987 + Psest_2453 0.87 -0.4
2,622,987 + Psest_2453 0.87 -0.2
2,622,987 + Psest_2453 0.87 -2.3
2,622,987 + Psest_2453 0.87 -2.1
2,622,987 + Psest_2453 0.87 +0.0
2,622,987 + Psest_2453 0.87 -0.4
2,622,987 + Psest_2453 0.87 -0.5
2,622,987 + Psest_2453 0.87 -1.0
2,622,987 + Psest_2453 0.87 -1.2
2,622,987 + Psest_2453 0.87 -0.5
2,622,987 + Psest_2453 0.87 -1.0
2,622,987 + Psest_2453 0.87 +0.3
2,622,988 - Psest_2453 0.87 -0.7
2,622,988 - Psest_2453 0.87 -0.6
2,622,988 - Psest_2453 0.87 -0.4
2,622,988 - Psest_2453 0.87 -0.6
2,622,988 - Psest_2453 0.87 -2.1
2,622,988 - Psest_2453 0.87 -0.4
2,622,988 - Psest_2453 0.87 +0.2
2,622,988 - Psest_2453 0.87 -1.4
2,622,988 - Psest_2453 0.87 -0.0
2,622,988 - Psest_2453 0.87 -0.1
2,622,988 - Psest_2453 0.87 +0.3
2,622,988 - Psest_2453 0.87 -1.6
2,622,988 - Psest_2453 0.87 +0.5
2,622,988 - Psest_2453 0.87 -0.1
2,622,988 - Psest_2453 0.87 +1.1
2,622,988 - Psest_2453 0.87 -1.9
2,622,988 - Psest_2453 0.87 +0.2
2,622,988 - Psest_2453 0.87 -0.5
2,622,988 - Psest_2453 0.87 -0.9
2,622,988 - Psest_2453 0.87 -1.1
2,622,988 - Psest_2453 0.87 -0.8
2,622,988 - Psest_2453 0.87 -0.2
2,622,989 + Psest_2453 0.87 +0.3
2,622,990 - Psest_2453 0.88 -0.7
2,623,083 - -0.8
2,623,096 + -1.0
2,623,096 + -0.8
2,623,097 - -2.1
2,623,098 + -1.0
2,623,116 + -1.0
2,623,116 + -0.4
2,623,117 - -0.1
2,623,229 + Psest_2454 0.16 -0.4
2,623,338 - Psest_2454 0.36 -0.9
2,623,547 + Psest_2454 0.74 +1.1
2,623,547 + Psest_2454 0.74 +0.4
2,623,671 - +0.1
2,623,847 + Psest_2455 0.14 -0.4
2,623,847 + Psest_2455 0.14 +0.7
2,624,055 + Psest_2455 0.40 +0.1
2,624,055 + Psest_2455 0.40 -0.8
2,624,055 + Psest_2455 0.40 +0.2
2,624,055 + Psest_2455 0.40 -1.0
2,624,055 + Psest_2455 0.40 -0.5
2,624,056 - Psest_2455 0.41 -0.9
2,624,056 - Psest_2455 0.41 +0.6
2,624,056 - Psest_2455 0.41 -0.3

Or see this region's nucleotide sequence