Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0228

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0227 and Psest_0228 are separated by 92 nucleotidesPsest_0228 and Psest_0229 are separated by 88 nucleotidesPsest_0229 and Psest_0230 are separated by 87 nucleotides Psest_0227: Psest_0227 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 235,979 to 237,373 _0227 Psest_0228: Psest_0228 - Glycerophosphoryl diester phosphodiesterase, at 237,466 to 238,581 _0228 Psest_0229: Psest_0229 - Dihydrofolate reductase, at 238,670 to 239,248 _0229 Psest_0230: Psest_0230 - Uncharacterized BCR, YitT family COG1284., at 239,336 to 239,983 _0230 Position (kb) 237 238 239Strain fitness (log2 ratio) -1 0 1 2at 236.562 kb on + strand, within Psest_0227at 236.562 kb on + strand, within Psest_0227at 236.563 kb on - strand, within Psest_0227at 236.563 kb on - strand, within Psest_0227at 236.563 kb on - strand, within Psest_0227at 236.791 kb on + strand, within Psest_0227at 236.791 kb on + strand, within Psest_0227at 236.791 kb on + strand, within Psest_0227at 236.792 kb on - strand, within Psest_0227at 236.831 kb on + strand, within Psest_0227at 236.843 kb on + strandat 237.636 kb on - strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.725 kb on + strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.726 kb on - strand, within Psest_0228at 237.765 kb on + strand, within Psest_0228at 237.766 kb on - strand, within Psest_0228at 237.766 kb on - strand, within Psest_0228at 237.801 kb on - strand, within Psest_0228at 237.833 kb on + strand, within Psest_0228at 237.834 kb on - strand, within Psest_0228at 237.921 kb on + strand, within Psest_0228at 237.922 kb on - strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.923 kb on + strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.924 kb on - strand, within Psest_0228at 237.947 kb on + strand, within Psest_0228at 238.361 kb on + strand, within Psest_0228at 238.361 kb on + strand, within Psest_0228at 238.362 kb on - strand, within Psest_0228at 238.362 kb on - strand, within Psest_0228at 238.362 kb on - strand, within Psest_0228at 238.391 kb on + strand, within Psest_0228at 238.392 kb on - strand, within Psest_0228at 238.658 kb on + strandat 238.658 kb on + strandat 238.658 kb on + strandat 238.659 kb on - strandat 238.659 kb on - strandat 238.659 kb on - strandat 238.659 kb on - strandat 238.717 kb on + strandat 238.717 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.301 kb on + strandat 239.302 kb on - strandat 239.302 kb on - strandat 239.302 kb on - strandat 239.465 kb on + strand, within Psest_0230at 239.466 kb on - strand, within Psest_0230at 239.466 kb on - strand, within Psest_0230at 239.466 kb on - strand, within Psest_0230at 239.466 kb on - strand, within Psest_0230at 239.466 kb on - strand, within Psest_0230at 239.522 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.577 kb on - strand, within Psest_0230

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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236,562 + Psest_0227 0.42 -1.0
236,562 + Psest_0227 0.42 +1.2
236,563 - Psest_0227 0.42 +1.8
236,563 - Psest_0227 0.42 +0.8
236,563 - Psest_0227 0.42 -0.0
236,791 + Psest_0227 0.58 +2.4
236,791 + Psest_0227 0.58 -0.5
236,791 + Psest_0227 0.58 +0.8
236,792 - Psest_0227 0.58 +0.6
236,831 + Psest_0227 0.61 -0.2
236,843 + +1.8
237,636 - Psest_0228 0.15 -0.3
237,725 + Psest_0228 0.23 +1.8
237,725 + Psest_0228 0.23 +0.1
237,725 + Psest_0228 0.23 +1.3
237,725 + Psest_0228 0.23 +1.0
237,725 + Psest_0228 0.23 +1.5
237,725 + Psest_0228 0.23 +0.7
237,725 + Psest_0228 0.23 +0.6
237,725 + Psest_0228 0.23 +0.6
237,726 - Psest_0228 0.23 +1.8
237,726 - Psest_0228 0.23 +0.1
237,726 - Psest_0228 0.23 +1.1
237,726 - Psest_0228 0.23 +1.4
237,726 - Psest_0228 0.23 -0.5
237,726 - Psest_0228 0.23 +1.5
237,726 - Psest_0228 0.23 +0.8
237,726 - Psest_0228 0.23 +2.0
237,726 - Psest_0228 0.23 +0.2
237,726 - Psest_0228 0.23 -1.5
237,726 - Psest_0228 0.23 -0.9
237,765 + Psest_0228 0.27 +1.8
237,766 - Psest_0228 0.27 +1.0
237,766 - Psest_0228 0.27 -0.2
237,801 - Psest_0228 0.30 +0.3
237,833 + Psest_0228 0.33 +1.4
237,834 - Psest_0228 0.33 +0.2
237,921 + Psest_0228 0.41 +1.2
237,922 - Psest_0228 0.41 +0.2
237,923 + Psest_0228 0.41 +1.5
237,923 + Psest_0228 0.41 +0.1
237,923 + Psest_0228 0.41 +1.3
237,923 + Psest_0228 0.41 +0.3
237,923 + Psest_0228 0.41 +1.0
237,923 + Psest_0228 0.41 +1.3
237,923 + Psest_0228 0.41 -1.5
237,923 + Psest_0228 0.41 +0.6
237,923 + Psest_0228 0.41 +0.9
237,924 - Psest_0228 0.41 -0.0
237,924 - Psest_0228 0.41 -0.5
237,924 - Psest_0228 0.41 +0.0
237,924 - Psest_0228 0.41 -0.1
237,924 - Psest_0228 0.41 -0.5
237,924 - Psest_0228 0.41 -0.2
237,924 - Psest_0228 0.41 +1.8
237,924 - Psest_0228 0.41 +1.4
237,924 - Psest_0228 0.41 +0.2
237,924 - Psest_0228 0.41 -0.0
237,924 - Psest_0228 0.41 -0.1
237,924 - Psest_0228 0.41 +0.0
237,924 - Psest_0228 0.41 +1.4
237,924 - Psest_0228 0.41 +1.8
237,947 + Psest_0228 0.43 +0.5
238,361 + Psest_0228 0.80 +1.1
238,361 + Psest_0228 0.80 +1.5
238,362 - Psest_0228 0.80 +0.2
238,362 - Psest_0228 0.80 -0.4
238,362 - Psest_0228 0.80 -0.8
238,391 + Psest_0228 0.83 -0.2
238,392 - Psest_0228 0.83 +0.7
238,658 + -0.6
238,658 + -0.8
238,658 + +1.1
238,659 - -0.4
238,659 - +0.0
238,659 - -0.3
238,659 - +1.0
238,717 + -1.3
238,717 + +0.2
239,301 + -0.3
239,301 + +0.8
239,301 + -0.6
239,301 + -0.4
239,301 + +0.9
239,301 + +0.3
239,301 + +1.5
239,301 + -0.1
239,301 + -0.5
239,301 + +0.4
239,302 - +1.2
239,302 - -0.6
239,302 - +0.9
239,465 + Psest_0230 0.20 -0.4
239,466 - Psest_0230 0.20 -0.1
239,466 - Psest_0230 0.20 +0.1
239,466 - Psest_0230 0.20 +0.0
239,466 - Psest_0230 0.20 -1.7
239,466 - Psest_0230 0.20 +0.1
239,522 + Psest_0230 0.29 +0.0
239,576 + Psest_0230 0.37 +1.0
239,576 + Psest_0230 0.37 +0.7
239,576 + Psest_0230 0.37 -0.2
239,576 + Psest_0230 0.37 +2.1
239,576 + Psest_0230 0.37 +0.1
239,576 + Psest_0230 0.37 +0.7
239,576 + Psest_0230 0.37 +0.4
239,577 - Psest_0230 0.37 -0.1

Or see this region's nucleotide sequence