Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2258

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2253 and Psest_2254 are separated by 112 nucleotidesPsest_2254 and Psest_2255 are separated by 0 nucleotidesPsest_2255 and Psest_2256 are separated by 152 nucleotidesPsest_2256 and Psest_2257 are separated by 46 nucleotidesPsest_2257 and Psest_2258 are separated by 69 nucleotidesPsest_2258 and Psest_2259 overlap by 23 nucleotides Psest_2253: Psest_2253 - small redox-active disulfide protein 2, at 2,402,918 to 2,403,148 _2253 Psest_2254: Psest_2254 - hypothetical protein, at 2,403,261 to 2,403,455 _2254 Psest_2255: Psest_2255 - hypothetical protein, at 2,403,456 to 2,403,701 _2255 Psest_2256: Psest_2256 - tRNA_Cys_GCA, at 2,403,854 to 2,403,927 _2256 Psest_2257: Psest_2257 - tRNA_Gly_GCC, at 2,403,974 to 2,404,049 _2257 Psest_2258: Psest_2258 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,404,119 to 2,404,733 _2258 Psest_2259: Psest_2259 - excinuclease ABC, C subunit, at 2,404,711 to 2,406,534 _2259 Position (kb) 2404 2405Strain fitness (log2 ratio) -2 -1 0 1 2at 2403.218 kb on - strandat 2403.218 kb on - strandat 2403.218 kb on - strandat 2403.218 kb on - strandat 2403.232 kb on + strandat 2403.232 kb on + strandat 2403.232 kb on + strandat 2403.232 kb on + strandat 2403.232 kb on + strandat 2403.232 kb on + strandat 2403.232 kb on + strandat 2403.232 kb on + strandat 2403.232 kb on + strandat 2403.232 kb on + strandat 2403.232 kb on + strandat 2403.233 kb on - strandat 2403.233 kb on - strandat 2403.233 kb on - strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.234 kb on + strandat 2403.235 kb on - strandat 2403.235 kb on - strandat 2403.235 kb on - strandat 2403.235 kb on - strandat 2403.235 kb on - strandat 2403.244 kb on + strandat 2403.279 kb on + strandat 2403.279 kb on + strandat 2403.279 kb on + strandat 2403.279 kb on + strandat 2403.279 kb on + strandat 2403.279 kb on + strandat 2403.279 kb on + strandat 2403.279 kb on + strandat 2403.280 kb on - strandat 2403.280 kb on - strandat 2403.280 kb on - strandat 2403.478 kb on + strandat 2403.478 kb on + strandat 2403.479 kb on - strandat 2403.479 kb on - strandat 2403.479 kb on - strandat 2403.735 kb on + strandat 2403.735 kb on + strandat 2403.735 kb on + strandat 2403.735 kb on + strandat 2403.736 kb on - strandat 2403.736 kb on - strandat 2403.736 kb on - strandat 2403.736 kb on - strandat 2403.736 kb on - strandat 2403.736 kb on - strandat 2403.737 kb on + strandat 2403.737 kb on + strandat 2403.737 kb on + strandat 2403.737 kb on + strandat 2403.737 kb on + strandat 2403.737 kb on + strandat 2403.737 kb on + strandat 2403.737 kb on + strandat 2403.737 kb on + strandat 2403.737 kb on + strandat 2403.738 kb on - strandat 2403.738 kb on - strandat 2403.738 kb on - strandat 2403.738 kb on - strandat 2403.738 kb on - strandat 2403.738 kb on - strandat 2403.738 kb on - strandat 2403.738 kb on - strandat 2403.738 kb on - strandat 2403.738 kb on - strandat 2403.738 kb on - strandat 2404.734 kb on - strandat 2404.798 kb on - strandat 2405.222 kb on + strand, within Psest_2259at 2405.222 kb on + strand, within Psest_2259at 2405.223 kb on - strand, within Psest_2259at 2405.544 kb on + strand, within Psest_2259at 2405.627 kb on + strand, within Psest_2259at 2405.628 kb on - strand, within Psest_2259at 2405.628 kb on - strand, within Psest_2259at 2405.630 kb on + strand, within Psest_2259at 2405.630 kb on + strand, within Psest_2259at 2405.650 kb on + strand, within Psest_2259

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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2,403,218 - -0.5
2,403,218 - +0.1
2,403,218 - -0.1
2,403,218 - -0.3
2,403,232 + -0.6
2,403,232 + +0.1
2,403,232 + -0.9
2,403,232 + +0.6
2,403,232 + -0.2
2,403,232 + -0.6
2,403,232 + -0.6
2,403,232 + -0.2
2,403,232 + +0.6
2,403,232 + -0.3
2,403,232 + +0.8
2,403,233 - -0.9
2,403,233 - +0.4
2,403,233 - -0.8
2,403,234 + -0.7
2,403,234 + +0.5
2,403,234 + -0.3
2,403,234 + +1.5
2,403,234 + -0.3
2,403,234 + -0.2
2,403,234 + -0.4
2,403,234 + -0.4
2,403,234 + -0.3
2,403,234 + -0.3
2,403,234 + +0.0
2,403,234 + +0.2
2,403,235 - -0.3
2,403,235 - -0.2
2,403,235 - -0.6
2,403,235 - +0.9
2,403,235 - -0.5
2,403,244 + -0.4
2,403,279 + +0.3
2,403,279 + +0.3
2,403,279 + -1.2
2,403,279 + -0.0
2,403,279 + +1.9
2,403,279 + -0.2
2,403,279 + +0.1
2,403,279 + +0.1
2,403,280 - -0.7
2,403,280 - +0.9
2,403,280 - +0.3
2,403,478 + +0.1
2,403,478 + -1.7
2,403,479 - -1.5
2,403,479 - -0.3
2,403,479 - +0.3
2,403,735 + -0.3
2,403,735 + -0.1
2,403,735 + -0.3
2,403,735 + +1.1
2,403,736 - -1.6
2,403,736 - +0.2
2,403,736 - -1.5
2,403,736 - -0.5
2,403,736 - +0.5
2,403,736 - -0.2
2,403,737 + -0.4
2,403,737 + +0.0
2,403,737 + -0.2
2,403,737 + -0.4
2,403,737 + +1.3
2,403,737 + -0.1
2,403,737 + -0.6
2,403,737 + -0.4
2,403,737 + -0.3
2,403,737 + +0.7
2,403,738 - +0.0
2,403,738 - -0.4
2,403,738 - -0.1
2,403,738 - -0.5
2,403,738 - +0.5
2,403,738 - -2.7
2,403,738 - -1.1
2,403,738 - -0.5
2,403,738 - -0.7
2,403,738 - +0.2
2,403,738 - -1.5
2,404,734 - -0.9
2,404,798 - -1.4
2,405,222 + Psest_2259 0.28 -0.1
2,405,222 + Psest_2259 0.28 +0.5
2,405,223 - Psest_2259 0.28 -0.9
2,405,544 + Psest_2259 0.46 -1.4
2,405,627 + Psest_2259 0.50 -0.7
2,405,628 - Psest_2259 0.50 -1.7
2,405,628 - Psest_2259 0.50 +0.2
2,405,630 + Psest_2259 0.50 -1.9
2,405,630 + Psest_2259 0.50 -0.8
2,405,650 + Psest_2259 0.51 -0.5

Or see this region's nucleotide sequence