Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1807

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1806 and Psest_1807 are separated by 259 nucleotidesPsest_1807 and Psest_1808 are separated by 131 nucleotides Psest_1806: Psest_1806 - Chain length determinant protein, at 1,903,818 to 1,905,098 _1806 Psest_1807: Psest_1807 - Chain length determinant protein, at 1,905,358 to 1,906,638 _1807 Psest_1808: Psest_1808 - Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain, at 1,906,770 to 1,908,323 _1808 Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1904.421 kb on + strand, within Psest_1806at 1904.421 kb on + strand, within Psest_1806at 1904.421 kb on + strand, within Psest_1806at 1904.421 kb on + strand, within Psest_1806at 1904.594 kb on + strand, within Psest_1806at 1904.595 kb on - strand, within Psest_1806at 1904.662 kb on + strand, within Psest_1806at 1904.662 kb on + strand, within Psest_1806at 1904.797 kb on + strand, within Psest_1806at 1904.848 kb on + strand, within Psest_1806at 1904.848 kb on + strand, within Psest_1806at 1904.848 kb on + strand, within Psest_1806at 1904.848 kb on + strand, within Psest_1806at 1904.848 kb on + strand, within Psest_1806at 1904.848 kb on + strand, within Psest_1806at 1904.848 kb on + strand, within Psest_1806at 1904.848 kb on + strand, within Psest_1806at 1904.848 kb on + strand, within Psest_1806at 1904.848 kb on + strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.849 kb on - strand, within Psest_1806at 1904.850 kb on + strand, within Psest_1806at 1904.850 kb on + strand, within Psest_1806at 1904.850 kb on + strand, within Psest_1806at 1904.851 kb on - strand, within Psest_1806at 1905.032 kb on - strandat 1905.047 kb on - strandat 1905.096 kb on + strandat 1905.097 kb on - strandat 1905.141 kb on + strandat 1905.141 kb on + strandat 1905.141 kb on + strandat 1905.141 kb on + strandat 1905.141 kb on + strandat 1905.141 kb on + strandat 1905.142 kb on - strandat 1905.142 kb on - strandat 1905.142 kb on - strandat 1905.142 kb on - strandat 1905.142 kb on - strandat 1905.142 kb on - strandat 1905.162 kb on + strandat 1905.196 kb on - strandat 1905.217 kb on + strandat 1905.217 kb on + strandat 1905.218 kb on - strandat 1905.467 kb on + strandat 1905.468 kb on - strandat 1905.468 kb on - strandat 1905.500 kb on - strand, within Psest_1807at 1905.520 kb on + strand, within Psest_1807at 1905.521 kb on - strand, within Psest_1807at 1905.523 kb on + strand, within Psest_1807at 1905.523 kb on + strand, within Psest_1807at 1905.523 kb on + strand, within Psest_1807at 1905.523 kb on + strand, within Psest_1807at 1905.524 kb on - strand, within Psest_1807at 1905.524 kb on - strand, within Psest_1807at 1905.542 kb on + strand, within Psest_1807at 1905.543 kb on - strand, within Psest_1807at 1905.588 kb on + strand, within Psest_1807at 1905.588 kb on + strand, within Psest_1807at 1905.588 kb on + strand, within Psest_1807at 1905.589 kb on - strand, within Psest_1807at 1905.589 kb on - strand, within Psest_1807at 1905.593 kb on - strand, within Psest_1807at 1905.593 kb on - strand, within Psest_1807at 1905.593 kb on - strand, within Psest_1807at 1905.593 kb on - strand, within Psest_1807at 1905.593 kb on - strand, within Psest_1807at 1905.698 kb on + strand, within Psest_1807at 1905.803 kb on - strand, within Psest_1807at 1905.803 kb on - strand, within Psest_1807at 1905.803 kb on - strand, within Psest_1807at 1905.823 kb on + strand, within Psest_1807at 1905.916 kb on - strand, within Psest_1807at 1905.936 kb on + strand, within Psest_1807at 1905.976 kb on + strand, within Psest_1807at 1905.977 kb on - strand, within Psest_1807at 1905.977 kb on - strand, within Psest_1807at 1905.977 kb on - strand, within Psest_1807at 1905.977 kb on - strand, within Psest_1807at 1906.206 kb on - strand, within Psest_1807at 1906.243 kb on + strand, within Psest_1807at 1906.243 kb on + strand, within Psest_1807at 1906.244 kb on - strand, within Psest_1807at 1906.382 kb on + strand, within Psest_1807at 1906.412 kb on + strand, within Psest_1807at 1906.413 kb on - strand, within Psest_1807at 1906.413 kb on - strand, within Psest_1807at 1906.547 kb on + strandat 1906.547 kb on + strandat 1906.548 kb on - strandat 1906.692 kb on + strandat 1906.834 kb on + strandat 1906.834 kb on + strandat 1906.834 kb on + strandat 1906.835 kb on - strandat 1906.835 kb on - strandat 1906.835 kb on - strandat 1906.835 kb on - strandat 1906.916 kb on + strandat 1907.007 kb on + strand, within Psest_1808at 1907.007 kb on + strand, within Psest_1808at 1907.040 kb on + strand, within Psest_1808at 1907.041 kb on - strand, within Psest_1808at 1907.041 kb on - strand, within Psest_1808at 1907.041 kb on - strand, within Psest_1808at 1907.065 kb on + strand, within Psest_1808at 1907.065 kb on + strand, within Psest_1808at 1907.066 kb on - strand, within Psest_1808at 1907.066 kb on - strand, within Psest_1808at 1907.066 kb on - strand, within Psest_1808at 1907.072 kb on + strand, within Psest_1808at 1907.098 kb on + strand, within Psest_1808at 1907.098 kb on + strand, within Psest_1808at 1907.099 kb on - strand, within Psest_1808at 1907.172 kb on + strand, within Psest_1808at 1907.173 kb on - strand, within Psest_1808at 1907.243 kb on + strand, within Psest_1808at 1907.244 kb on - strand, within Psest_1808at 1907.259 kb on + strand, within Psest_1808at 1907.260 kb on - strand, within Psest_1808at 1907.492 kb on - strand, within Psest_1808at 1907.536 kb on - strand, within Psest_1808at 1907.576 kb on + strand, within Psest_1808at 1907.623 kb on + strand, within Psest_1808at 1907.623 kb on + strand, within Psest_1808at 1907.624 kb on - strand, within Psest_1808at 1907.624 kb on - strand, within Psest_1808at 1907.624 kb on - strand, within Psest_1808

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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1,904,421 + Psest_1806 0.47 -0.0
1,904,421 + Psest_1806 0.47 -0.2
1,904,421 + Psest_1806 0.47 -0.0
1,904,421 + Psest_1806 0.47 -0.2
1,904,594 + Psest_1806 0.61 +1.0
1,904,595 - Psest_1806 0.61 -0.2
1,904,662 + Psest_1806 0.66 +0.1
1,904,662 + Psest_1806 0.66 -0.3
1,904,797 + Psest_1806 0.76 +0.9
1,904,848 + Psest_1806 0.80 -0.6
1,904,848 + Psest_1806 0.80 +0.7
1,904,848 + Psest_1806 0.80 +1.3
1,904,848 + Psest_1806 0.80 +2.0
1,904,848 + Psest_1806 0.80 +0.9
1,904,848 + Psest_1806 0.80 +0.6
1,904,848 + Psest_1806 0.80 +1.0
1,904,848 + Psest_1806 0.80 +1.2
1,904,848 + Psest_1806 0.80 +0.4
1,904,848 + Psest_1806 0.80 +0.0
1,904,849 - Psest_1806 0.80 -0.1
1,904,849 - Psest_1806 0.80 -1.5
1,904,849 - Psest_1806 0.80 -2.8
1,904,849 - Psest_1806 0.80 -0.8
1,904,849 - Psest_1806 0.80 +1.1
1,904,849 - Psest_1806 0.80 -0.8
1,904,849 - Psest_1806 0.80 -1.0
1,904,849 - Psest_1806 0.80 -0.0
1,904,849 - Psest_1806 0.80 +1.4
1,904,849 - Psest_1806 0.80 -1.1
1,904,849 - Psest_1806 0.80 -1.2
1,904,850 + Psest_1806 0.81 +1.2
1,904,850 + Psest_1806 0.81 -1.1
1,904,850 + Psest_1806 0.81 +0.9
1,904,851 - Psest_1806 0.81 +0.3
1,905,032 - +0.1
1,905,047 - +0.4
1,905,096 + +1.4
1,905,097 - -0.5
1,905,141 + -0.7
1,905,141 + -0.1
1,905,141 + -1.5
1,905,141 + -0.1
1,905,141 + +0.3
1,905,141 + -0.9
1,905,142 - +1.3
1,905,142 - -0.2
1,905,142 - -0.1
1,905,142 - -0.7
1,905,142 - +1.6
1,905,142 - +0.3
1,905,162 + +0.4
1,905,196 - +2.2
1,905,217 + -0.3
1,905,217 + +0.8
1,905,218 - +1.9
1,905,467 + -0.5
1,905,468 - -0.4
1,905,468 - +0.1
1,905,500 - Psest_1807 0.11 -0.2
1,905,520 + Psest_1807 0.13 -0.4
1,905,521 - Psest_1807 0.13 +0.3
1,905,523 + Psest_1807 0.13 +0.0
1,905,523 + Psest_1807 0.13 +0.3
1,905,523 + Psest_1807 0.13 -0.3
1,905,523 + Psest_1807 0.13 +0.1
1,905,524 - Psest_1807 0.13 +0.2
1,905,524 - Psest_1807 0.13 +0.1
1,905,542 + Psest_1807 0.14 +1.1
1,905,543 - Psest_1807 0.14 +0.0
1,905,588 + Psest_1807 0.18 -0.4
1,905,588 + Psest_1807 0.18 +0.8
1,905,588 + Psest_1807 0.18 -0.1
1,905,589 - Psest_1807 0.18 -0.9
1,905,589 - Psest_1807 0.18 -1.7
1,905,593 - Psest_1807 0.18 +0.7
1,905,593 - Psest_1807 0.18 -0.2
1,905,593 - Psest_1807 0.18 +0.5
1,905,593 - Psest_1807 0.18 -0.4
1,905,593 - Psest_1807 0.18 +1.2
1,905,698 + Psest_1807 0.27 -0.3
1,905,803 - Psest_1807 0.35 -1.0
1,905,803 - Psest_1807 0.35 -0.1
1,905,803 - Psest_1807 0.35 -0.5
1,905,823 + Psest_1807 0.36 +0.1
1,905,916 - Psest_1807 0.44 -0.7
1,905,936 + Psest_1807 0.45 +0.0
1,905,976 + Psest_1807 0.48 +0.1
1,905,977 - Psest_1807 0.48 +0.0
1,905,977 - Psest_1807 0.48 +0.8
1,905,977 - Psest_1807 0.48 -1.6
1,905,977 - Psest_1807 0.48 -1.1
1,906,206 - Psest_1807 0.66 -0.4
1,906,243 + Psest_1807 0.69 +0.2
1,906,243 + Psest_1807 0.69 +0.9
1,906,244 - Psest_1807 0.69 +1.1
1,906,382 + Psest_1807 0.80 +1.2
1,906,412 + Psest_1807 0.82 -0.2
1,906,413 - Psest_1807 0.82 -0.7
1,906,413 - Psest_1807 0.82 +0.1
1,906,547 + +1.5
1,906,547 + +0.1
1,906,548 - -0.8
1,906,692 + +0.5
1,906,834 + -0.5
1,906,834 + +0.1
1,906,834 + +0.4
1,906,835 - -0.4
1,906,835 - +1.8
1,906,835 - -0.4
1,906,835 - -0.2
1,906,916 + -0.0
1,907,007 + Psest_1808 0.15 -0.8
1,907,007 + Psest_1808 0.15 +0.6
1,907,040 + Psest_1808 0.17 +0.4
1,907,041 - Psest_1808 0.17 -0.1
1,907,041 - Psest_1808 0.17 -0.7
1,907,041 - Psest_1808 0.17 -0.8
1,907,065 + Psest_1808 0.19 -0.1
1,907,065 + Psest_1808 0.19 -0.0
1,907,066 - Psest_1808 0.19 -0.2
1,907,066 - Psest_1808 0.19 -0.4
1,907,066 - Psest_1808 0.19 -1.6
1,907,072 + Psest_1808 0.19 +0.9
1,907,098 + Psest_1808 0.21 +1.0
1,907,098 + Psest_1808 0.21 +2.1
1,907,099 - Psest_1808 0.21 +0.9
1,907,172 + Psest_1808 0.26 -0.3
1,907,173 - Psest_1808 0.26 +2.9
1,907,243 + Psest_1808 0.30 -0.5
1,907,244 - Psest_1808 0.31 +0.5
1,907,259 + Psest_1808 0.31 -0.4
1,907,260 - Psest_1808 0.32 +1.4
1,907,492 - Psest_1808 0.46 +0.9
1,907,536 - Psest_1808 0.49 +1.2
1,907,576 + Psest_1808 0.52 +0.7
1,907,623 + Psest_1808 0.55 +1.3
1,907,623 + Psest_1808 0.55 +0.4
1,907,624 - Psest_1808 0.55 -0.2
1,907,624 - Psest_1808 0.55 +0.8
1,907,624 - Psest_1808 0.55 -0.6

Or see this region's nucleotide sequence