Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0162

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0161 and Psest_0162 are separated by 114 nucleotidesPsest_0162 and Psest_0163 are separated by 140 nucleotidesPsest_0163 and Psest_0164 are separated by 2 nucleotidesPsest_0164 and Psest_0165 are separated by 64 nucleotides Psest_0161: Psest_0161 - Membrane-bound metallopeptidase, at 159,242 to 160,504 _0161 Psest_0162: Psest_0162 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 160,619 to 162,166 _0162 Psest_0163: Psest_0163 - Rhodanese-related sulfurtransferase, at 162,307 to 162,720 _0163 Psest_0164: Psest_0164 - Glutaredoxin, GrxC family, at 162,723 to 162,977 _0164 Psest_0165: Psest_0165 - protein-export chaperone SecB, at 163,042 to 163,536 _0165 Position (kb) 160 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 160.086 kb on + strand, within Psest_0161at 160.527 kb on - strandat 160.537 kb on + strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.538 kb on - strandat 160.541 kb on - strandat 160.541 kb on - strandat 160.541 kb on - strandat 160.541 kb on - strandat 160.541 kb on - strandat 160.541 kb on - strandat 160.541 kb on - strandat 160.541 kb on - strandat 160.541 kb on - strandat 160.547 kb on - strandat 162.270 kb on + strandat 162.270 kb on + strandat 162.270 kb on + strandat 162.270 kb on + strandat 162.270 kb on + strandat 162.270 kb on + strandat 162.270 kb on + strandat 162.271 kb on - strandat 162.271 kb on - strandat 162.271 kb on - strandat 162.271 kb on - strandat 162.272 kb on + strandat 162.272 kb on + strandat 162.272 kb on + strandat 162.288 kb on - strandat 162.343 kb on + strandat 162.344 kb on - strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.347 kb on + strandat 162.348 kb on - strandat 162.348 kb on - strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.718 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.741 kb on + strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.742 kb on - strandat 162.743 kb on + strandat 162.743 kb on + strandat 162.807 kb on + strand, within Psest_0164at 163.028 kb on - strandat 163.028 kb on - strandat 163.056 kb on + strandat 163.057 kb on - strandat 163.117 kb on + strand, within Psest_0165at 163.118 kb on - strand, within Psest_0165at 163.118 kb on - strand, within Psest_0165

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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160,086 + Psest_0161 0.67 -2.8
160,527 - -1.9
160,537 + +0.6
160,538 - -1.6
160,538 - -1.1
160,538 - +0.7
160,538 - +0.3
160,538 - -1.1
160,538 - +0.5
160,538 - -1.1
160,538 - +0.2
160,538 - -1.4
160,538 - -0.0
160,538 - -1.2
160,538 - -1.0
160,538 - -1.6
160,538 - -1.7
160,538 - -1.0
160,538 - -1.7
160,541 - -1.1
160,541 - -0.7
160,541 - +0.5
160,541 - -1.4
160,541 - -0.4
160,541 - -0.6
160,541 - +0.4
160,541 - -0.6
160,541 - -2.0
160,547 - -1.6
162,270 + -2.3
162,270 + -1.0
162,270 + -2.0
162,270 + +0.1
162,270 + -2.0
162,270 + +0.4
162,270 + -1.0
162,271 - +0.1
162,271 - +1.2
162,271 - +0.0
162,271 - +1.0
162,272 + -0.3
162,272 + -0.5
162,272 + -0.7
162,288 - +1.2
162,343 + -0.4
162,344 - +0.5
162,347 + +1.2
162,347 + +0.7
162,347 + +0.1
162,347 + +1.4
162,347 + -0.5
162,347 + -0.2
162,347 + +1.1
162,347 + -0.2
162,347 + +0.5
162,347 + +0.6
162,347 + +1.8
162,347 + +1.8
162,347 + +0.6
162,348 - +2.8
162,348 - +1.0
162,718 + +0.2
162,718 + -0.5
162,718 + +0.9
162,718 + -0.3
162,718 + +0.3
162,718 + +0.2
162,718 + +1.0
162,718 + +0.7
162,741 + -0.1
162,741 + +1.3
162,741 + +0.7
162,741 + +1.2
162,741 + +0.1
162,741 + +0.6
162,741 + +1.3
162,741 + +0.1
162,741 + +2.1
162,741 + -0.7
162,741 + +0.6
162,741 + -1.2
162,741 + +0.8
162,741 + +0.5
162,741 + +0.2
162,741 + +1.3
162,741 + +2.7
162,741 + -0.0
162,741 + +0.7
162,741 + +0.1
162,741 + +0.9
162,742 - +0.9
162,742 - +2.0
162,742 - -0.7
162,742 - -0.8
162,742 - -0.2
162,742 - -0.7
162,742 - +0.2
162,743 + -0.0
162,743 + +0.5
162,807 + Psest_0164 0.33 +1.0
163,028 - +2.2
163,028 - +0.8
163,056 + +1.2
163,057 - -1.0
163,117 + Psest_0165 0.15 -0.8
163,118 - Psest_0165 0.15 +0.2
163,118 - Psest_0165 0.15 +0.2

Or see this region's nucleotide sequence