Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1531

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1529 and Psest_1530 overlap by 4 nucleotidesPsest_1530 and Psest_1531 overlap by 4 nucleotidesPsest_1531 and Psest_1532 are separated by 43 nucleotides Psest_1529: Psest_1529 - Predicted branched-chain amino acid permease (azaleucine resistance), at 1,631,594 to 1,632,310 _1529 Psest_1530: Psest_1530 - Predicted membrane protein, at 1,632,307 to 1,632,633 _1530 Psest_1531: Psest_1531 - hypothetical protein, at 1,632,630 to 1,634,042 _1531 Psest_1532: Psest_1532 - DNA recombination-dependent growth factor C, at 1,634,086 to 1,635,006 _1532 Position (kb) 1632 1633 1634 1635Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1631.846 kb on + strand, within Psest_1529at 1631.846 kb on + strand, within Psest_1529at 1631.846 kb on + strand, within Psest_1529at 1631.846 kb on + strand, within Psest_1529at 1631.846 kb on + strand, within Psest_1529at 1631.846 kb on + strand, within Psest_1529at 1631.847 kb on - strand, within Psest_1529at 1631.847 kb on - strand, within Psest_1529at 1631.847 kb on - strand, within Psest_1529at 1631.847 kb on - strand, within Psest_1529at 1631.847 kb on - strand, within Psest_1529at 1631.848 kb on + strand, within Psest_1529at 1631.975 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.014 kb on + strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.015 kb on - strand, within Psest_1529at 1632.210 kb on - strand, within Psest_1529at 1632.210 kb on - strand, within Psest_1529at 1632.306 kb on + strandat 1632.307 kb on - strandat 1632.312 kb on + strandat 1632.325 kb on - strandat 1632.325 kb on - strandat 1632.361 kb on + strand, within Psest_1530at 1632.421 kb on + strand, within Psest_1530at 1632.421 kb on + strand, within Psest_1530at 1632.421 kb on + strand, within Psest_1530at 1632.421 kb on + strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.422 kb on - strand, within Psest_1530at 1632.508 kb on + strand, within Psest_1530at 1632.508 kb on + strand, within Psest_1530at 1632.970 kb on + strand, within Psest_1531at 1632.970 kb on + strand, within Psest_1531at 1633.074 kb on + strand, within Psest_1531at 1633.075 kb on - strand, within Psest_1531at 1633.300 kb on + strand, within Psest_1531at 1633.300 kb on + strand, within Psest_1531at 1633.300 kb on + strand, within Psest_1531at 1633.300 kb on + strand, within Psest_1531at 1633.301 kb on - strand, within Psest_1531at 1633.301 kb on - strand, within Psest_1531at 1633.301 kb on - strand, within Psest_1531at 1633.301 kb on - strand, within Psest_1531at 1633.301 kb on - strand, within Psest_1531at 1633.301 kb on - strand, within Psest_1531at 1633.305 kb on - strand, within Psest_1531at 1633.305 kb on - strand, within Psest_1531at 1633.305 kb on - strand, within Psest_1531at 1633.305 kb on - strand, within Psest_1531at 1633.305 kb on - strand, within Psest_1531at 1633.422 kb on + strand, within Psest_1531at 1633.423 kb on - strandat 1633.423 kb on - strand, within Psest_1531at 1633.493 kb on + strand, within Psest_1531at 1633.493 kb on + strand, within Psest_1531at 1633.494 kb on - strand, within Psest_1531at 1633.494 kb on - strand, within Psest_1531at 1633.637 kb on + strand, within Psest_1531at 1633.637 kb on + strand, within Psest_1531at 1633.637 kb on + strand, within Psest_1531at 1633.638 kb on - strand, within Psest_1531at 1633.638 kb on - strand, within Psest_1531at 1633.638 kb on - strand, within Psest_1531at 1633.638 kb on - strand, within Psest_1531at 1633.740 kb on + strand, within Psest_1531at 1633.740 kb on + strand, within Psest_1531at 1633.740 kb on + strand, within Psest_1531at 1633.740 kb on + strand, within Psest_1531at 1633.740 kb on + strand, within Psest_1531at 1633.740 kb on + strand, within Psest_1531at 1633.741 kb on - strand, within Psest_1531at 1633.741 kb on - strand, within Psest_1531at 1633.756 kb on - strand, within Psest_1531at 1633.756 kb on - strand, within Psest_1531at 1633.933 kb on + strandat 1633.933 kb on + strandat 1633.933 kb on + strandat 1634.278 kb on + strand, within Psest_1532at 1634.340 kb on + strand, within Psest_1532at 1634.341 kb on - strand, within Psest_1532at 1634.708 kb on + strand, within Psest_1532at 1634.708 kb on + strand, within Psest_1532at 1634.708 kb on + strand, within Psest_1532at 1634.708 kb on + strand, within Psest_1532at 1634.709 kb on - strand, within Psest_1532at 1634.755 kb on + strand, within Psest_1532at 1634.836 kb on + strand, within Psest_1532at 1634.837 kb on - strand, within Psest_1532at 1634.882 kb on + strand, within Psest_1532at 1634.882 kb on + strand, within Psest_1532at 1634.882 kb on + strand, within Psest_1532at 1635.015 kb on - strandat 1635.015 kb on - strandat 1635.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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1,631,846 + Psest_1529 0.35 -0.0
1,631,846 + Psest_1529 0.35 -0.9
1,631,846 + Psest_1529 0.35 +1.3
1,631,846 + Psest_1529 0.35 -0.2
1,631,846 + Psest_1529 0.35 -0.2
1,631,846 + Psest_1529 0.35 -0.4
1,631,847 - Psest_1529 0.35 +0.3
1,631,847 - Psest_1529 0.35 +0.3
1,631,847 - Psest_1529 0.35 -0.2
1,631,847 - Psest_1529 0.35 -1.1
1,631,847 - Psest_1529 0.35 +0.5
1,631,848 + Psest_1529 0.35 -0.2
1,631,975 + Psest_1529 0.53 -1.1
1,632,014 + Psest_1529 0.59 -1.1
1,632,014 + Psest_1529 0.59 +0.4
1,632,014 + Psest_1529 0.59 +0.0
1,632,014 + Psest_1529 0.59 +0.9
1,632,014 + Psest_1529 0.59 -0.4
1,632,014 + Psest_1529 0.59 +1.1
1,632,014 + Psest_1529 0.59 +0.6
1,632,014 + Psest_1529 0.59 +0.5
1,632,014 + Psest_1529 0.59 +0.5
1,632,014 + Psest_1529 0.59 -0.3
1,632,014 + Psest_1529 0.59 +0.1
1,632,014 + Psest_1529 0.59 -0.9
1,632,014 + Psest_1529 0.59 -0.4
1,632,014 + Psest_1529 0.59 +1.3
1,632,014 + Psest_1529 0.59 -0.3
1,632,014 + Psest_1529 0.59 -0.5
1,632,014 + Psest_1529 0.59 -1.9
1,632,015 - Psest_1529 0.59 -0.1
1,632,015 - Psest_1529 0.59 -0.5
1,632,015 - Psest_1529 0.59 +1.1
1,632,015 - Psest_1529 0.59 +0.0
1,632,015 - Psest_1529 0.59 -0.7
1,632,015 - Psest_1529 0.59 +0.4
1,632,015 - Psest_1529 0.59 -0.2
1,632,015 - Psest_1529 0.59 +1.0
1,632,015 - Psest_1529 0.59 -0.5
1,632,015 - Psest_1529 0.59 -1.0
1,632,015 - Psest_1529 0.59 -0.3
1,632,015 - Psest_1529 0.59 -1.1
1,632,015 - Psest_1529 0.59 +0.1
1,632,015 - Psest_1529 0.59 -0.1
1,632,015 - Psest_1529 0.59 +0.1
1,632,015 - Psest_1529 0.59 +0.0
1,632,015 - Psest_1529 0.59 -1.6
1,632,015 - Psest_1529 0.59 -0.5
1,632,210 - Psest_1529 0.86 -0.5
1,632,210 - Psest_1529 0.86 -0.4
1,632,306 + +0.8
1,632,307 - +0.4
1,632,312 + -0.5
1,632,325 - -0.4
1,632,325 - +0.0
1,632,361 + Psest_1530 0.17 +1.0
1,632,421 + Psest_1530 0.35 +0.1
1,632,421 + Psest_1530 0.35 +0.9
1,632,421 + Psest_1530 0.35 -0.1
1,632,421 + Psest_1530 0.35 +0.5
1,632,422 - Psest_1530 0.35 -0.7
1,632,422 - Psest_1530 0.35 +0.3
1,632,422 - Psest_1530 0.35 -0.9
1,632,422 - Psest_1530 0.35 -0.7
1,632,422 - Psest_1530 0.35 -1.1
1,632,422 - Psest_1530 0.35 -1.2
1,632,422 - Psest_1530 0.35 -0.3
1,632,422 - Psest_1530 0.35 -1.5
1,632,508 + Psest_1530 0.61 +0.2
1,632,508 + Psest_1530 0.61 +0.4
1,632,970 + Psest_1531 0.24 +0.7
1,632,970 + Psest_1531 0.24 +0.2
1,633,074 + Psest_1531 0.31 -1.8
1,633,075 - Psest_1531 0.31 -1.1
1,633,300 + Psest_1531 0.47 +2.2
1,633,300 + Psest_1531 0.47 -0.2
1,633,300 + Psest_1531 0.47 -0.4
1,633,300 + Psest_1531 0.47 +0.3
1,633,301 - Psest_1531 0.47 -1.1
1,633,301 - Psest_1531 0.47 -1.5
1,633,301 - Psest_1531 0.47 -0.8
1,633,301 - Psest_1531 0.47 -0.6
1,633,301 - Psest_1531 0.47 -2.6
1,633,301 - Psest_1531 0.47 -0.8
1,633,305 - Psest_1531 0.48 -0.3
1,633,305 - Psest_1531 0.48 +0.3
1,633,305 - Psest_1531 0.48 +0.2
1,633,305 - Psest_1531 0.48 -1.1
1,633,305 - Psest_1531 0.48 +2.0
1,633,422 + Psest_1531 0.56 +0.4
1,633,423 - +0.2
1,633,423 - Psest_1531 0.56 -2.6
1,633,493 + Psest_1531 0.61 +0.2
1,633,493 + Psest_1531 0.61 +1.2
1,633,494 - Psest_1531 0.61 -0.4
1,633,494 - Psest_1531 0.61 -1.1
1,633,637 + Psest_1531 0.71 +0.2
1,633,637 + Psest_1531 0.71 -0.1
1,633,637 + Psest_1531 0.71 +0.9
1,633,638 - Psest_1531 0.71 +0.5
1,633,638 - Psest_1531 0.71 -1.0
1,633,638 - Psest_1531 0.71 +0.9
1,633,638 - Psest_1531 0.71 -2.5
1,633,740 + Psest_1531 0.79 +0.2
1,633,740 + Psest_1531 0.79 -0.9
1,633,740 + Psest_1531 0.79 +0.5
1,633,740 + Psest_1531 0.79 -0.6
1,633,740 + Psest_1531 0.79 +0.6
1,633,740 + Psest_1531 0.79 -1.8
1,633,741 - Psest_1531 0.79 -1.0
1,633,741 - Psest_1531 0.79 -0.8
1,633,756 - Psest_1531 0.80 -0.4
1,633,756 - Psest_1531 0.80 -2.6
1,633,933 + +1.0
1,633,933 + +0.9
1,633,933 + +1.7
1,634,278 + Psest_1532 0.21 -0.5
1,634,340 + Psest_1532 0.28 -0.3
1,634,341 - Psest_1532 0.28 -0.7
1,634,708 + Psest_1532 0.68 -3.4
1,634,708 + Psest_1532 0.68 -1.3
1,634,708 + Psest_1532 0.68 -1.5
1,634,708 + Psest_1532 0.68 -1.9
1,634,709 - Psest_1532 0.68 -0.9
1,634,755 + Psest_1532 0.73 +0.9
1,634,836 + Psest_1532 0.81 +1.1
1,634,837 - Psest_1532 0.82 -1.0
1,634,882 + Psest_1532 0.86 +0.7
1,634,882 + Psest_1532 0.86 -0.8
1,634,882 + Psest_1532 0.86 -1.6
1,635,015 - +0.1
1,635,015 - -1.2
1,635,042 + -0.2

Or see this region's nucleotide sequence