Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1493

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1492 and Psest_1493 are separated by 345 nucleotidesPsest_1493 and Psest_1494 are separated by 150 nucleotides Psest_1492: Psest_1492 - DNA-binding ferritin-like protein (oxidative damage protectant), at 1,593,912 to 1,594,382 _1492 Psest_1493: Psest_1493 - aspartyl-tRNA synthetase, bacterial type, at 1,594,728 to 1,596,503 _1493 Psest_1494: Psest_1494 - DNA-binding regulatory protein, YebC/PmpR family, at 1,596,654 to 1,597,403 _1494 Position (kb) 1594 1595 1596 1597Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1593.773 kb on + strandat 1593.773 kb on + strandat 1593.774 kb on - strandat 1593.777 kb on + strandat 1593.777 kb on + strandat 1593.778 kb on - strandat 1593.783 kb on + strandat 1593.783 kb on + strandat 1593.783 kb on + strandat 1593.783 kb on + strandat 1593.832 kb on + strandat 1593.832 kb on + strandat 1593.832 kb on + strandat 1593.839 kb on + strandat 1593.839 kb on + strandat 1593.839 kb on + strandat 1593.839 kb on + strandat 1593.857 kb on + strandat 1594.141 kb on + strand, within Psest_1492at 1594.141 kb on + strand, within Psest_1492at 1594.141 kb on + strand, within Psest_1492at 1594.141 kb on + strand, within Psest_1492at 1594.142 kb on - strand, within Psest_1492at 1594.142 kb on - strand, within Psest_1492at 1594.216 kb on + strand, within Psest_1492at 1594.235 kb on + strand, within Psest_1492at 1594.235 kb on + strand, within Psest_1492at 1594.236 kb on - strand, within Psest_1492at 1594.294 kb on + strand, within Psest_1492at 1594.295 kb on - strand, within Psest_1492at 1594.295 kb on - strand, within Psest_1492at 1594.295 kb on - strand, within Psest_1492at 1594.295 kb on - strand, within Psest_1492at 1594.301 kb on + strand, within Psest_1492at 1594.301 kb on + strand, within Psest_1492at 1594.302 kb on - strand, within Psest_1492at 1594.302 kb on - strand, within Psest_1492at 1594.302 kb on - strand, within Psest_1492at 1594.302 kb on - strand, within Psest_1492at 1594.302 kb on - strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.303 kb on + strand, within Psest_1492at 1594.304 kb on - strand, within Psest_1492at 1594.304 kb on - strand, within Psest_1492at 1594.304 kb on - strand, within Psest_1492at 1594.304 kb on - strand, within Psest_1492at 1594.304 kb on - strand, within Psest_1492at 1594.304 kb on - strand, within Psest_1492at 1594.304 kb on - strand, within Psest_1492at 1594.304 kb on - strand, within Psest_1492at 1594.304 kb on - strand, within Psest_1492at 1594.304 kb on - strand, within Psest_1492at 1594.412 kb on + strandat 1594.412 kb on + strandat 1594.412 kb on + strandat 1594.412 kb on + strandat 1594.412 kb on + strandat 1594.412 kb on + strandat 1594.413 kb on - strandat 1594.413 kb on - strandat 1594.413 kb on - strandat 1594.413 kb on - strandat 1594.413 kb on - strandat 1594.413 kb on - strandat 1594.413 kb on - strandat 1594.416 kb on + strandat 1594.417 kb on - strandat 1594.417 kb on - strandat 1594.417 kb on - strandat 1594.417 kb on - strandat 1594.548 kb on + strandat 1594.548 kb on + strandat 1594.548 kb on + strandat 1594.552 kb on + strandat 1594.552 kb on + strandat 1594.552 kb on + strandat 1594.560 kb on + strandat 1594.560 kb on + strandat 1594.560 kb on + strandat 1594.560 kb on + strandat 1594.560 kb on + strandat 1597.435 kb on + strandat 1597.435 kb on + strandat 1597.435 kb on + strandat 1597.436 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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1,593,773 + +0.8
1,593,773 + +1.1
1,593,774 - +0.1
1,593,777 + -0.6
1,593,777 + +1.4
1,593,778 - -1.5
1,593,783 + +1.1
1,593,783 + -0.5
1,593,783 + +1.3
1,593,783 + +0.9
1,593,832 + +0.9
1,593,832 + +1.3
1,593,832 + +1.1
1,593,839 + +1.4
1,593,839 + +1.8
1,593,839 + +1.6
1,593,839 + +0.9
1,593,857 + +1.0
1,594,141 + Psest_1492 0.49 +2.6
1,594,141 + Psest_1492 0.49 +0.0
1,594,141 + Psest_1492 0.49 -1.1
1,594,141 + Psest_1492 0.49 +1.1
1,594,142 - Psest_1492 0.49 -0.8
1,594,142 - Psest_1492 0.49 +0.5
1,594,216 + Psest_1492 0.65 +0.2
1,594,235 + Psest_1492 0.69 +0.7
1,594,235 + Psest_1492 0.69 +0.6
1,594,236 - Psest_1492 0.69 -0.6
1,594,294 + Psest_1492 0.81 -0.3
1,594,295 - Psest_1492 0.81 +1.3
1,594,295 - Psest_1492 0.81 +1.1
1,594,295 - Psest_1492 0.81 +2.1
1,594,295 - Psest_1492 0.81 +0.2
1,594,301 + Psest_1492 0.83 -1.6
1,594,301 + Psest_1492 0.83 +1.1
1,594,302 - Psest_1492 0.83 -0.5
1,594,302 - Psest_1492 0.83 +0.9
1,594,302 - Psest_1492 0.83 +1.2
1,594,302 - Psest_1492 0.83 +1.0
1,594,302 - Psest_1492 0.83 -0.8
1,594,303 + Psest_1492 0.83 +0.5
1,594,303 + Psest_1492 0.83 +0.7
1,594,303 + Psest_1492 0.83 -0.8
1,594,303 + Psest_1492 0.83 -0.8
1,594,303 + Psest_1492 0.83 -1.8
1,594,303 + Psest_1492 0.83 +0.5
1,594,303 + Psest_1492 0.83 +1.6
1,594,303 + Psest_1492 0.83 -0.5
1,594,303 + Psest_1492 0.83 +2.1
1,594,303 + Psest_1492 0.83 -0.7
1,594,303 + Psest_1492 0.83 -0.3
1,594,303 + Psest_1492 0.83 +2.1
1,594,303 + Psest_1492 0.83 +0.5
1,594,303 + Psest_1492 0.83 -0.3
1,594,303 + Psest_1492 0.83 +1.2
1,594,303 + Psest_1492 0.83 -0.5
1,594,303 + Psest_1492 0.83 +0.5
1,594,304 - Psest_1492 0.83 +1.1
1,594,304 - Psest_1492 0.83 +1.5
1,594,304 - Psest_1492 0.83 -0.3
1,594,304 - Psest_1492 0.83 -1.3
1,594,304 - Psest_1492 0.83 +1.5
1,594,304 - Psest_1492 0.83 -1.4
1,594,304 - Psest_1492 0.83 +0.6
1,594,304 - Psest_1492 0.83 -0.5
1,594,304 - Psest_1492 0.83 -1.6
1,594,304 - Psest_1492 0.83 -1.1
1,594,412 + +0.7
1,594,412 + +2.6
1,594,412 + -2.9
1,594,412 + +0.5
1,594,412 + -0.9
1,594,412 + -2.1
1,594,413 - +2.3
1,594,413 - +0.6
1,594,413 - -0.4
1,594,413 - +1.1
1,594,413 - +0.1
1,594,413 - +1.2
1,594,413 - -0.3
1,594,416 + -0.9
1,594,417 - +0.7
1,594,417 - +1.9
1,594,417 - +2.0
1,594,417 - +0.4
1,594,548 + -1.5
1,594,548 + +1.5
1,594,548 + +0.1
1,594,552 + +0.5
1,594,552 + -0.3
1,594,552 + -0.9
1,594,560 + -0.3
1,594,560 + +1.8
1,594,560 + -0.4
1,594,560 + +0.3
1,594,560 + +0.1
1,597,435 + +0.6
1,597,435 + +0.3
1,597,435 + +0.4
1,597,436 - +0.5

Or see this region's nucleotide sequence