Experiment: Def Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0132 and Psest_0133 are separated by 26 nucleotides Psest_0133 and Psest_0134 are separated by 16 nucleotides Psest_0134 and Psest_0135 are separated by 378 nucleotides
Psest_0132: Psest_0132 - type VI secretion protein, EvpB/VC_A0108 family, at 130,780 to 132,258
_0132
Psest_0133: Psest_0133 - type VI secretion protein, VC_A0107 family, at 132,285 to 132,791
_0133
Psest_0134: Psest_0134 - type VI secretion-associated protein, VC_A0119 family, at 132,808 to 134,370
_0134
Psest_0135: Psest_0135 - Uncharacterized enzymes related to aldose 1-epimerase, at 134,749 to 135,651
_0135
Position (kb) 132
133
134
135 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 131.817 kb on - strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.828 kb on + strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.829 kb on - strand, within Psest_0132 at 131.840 kb on + strand, within Psest_0132 at 131.840 kb on + strand, within Psest_0132 at 131.840 kb on + strand, within Psest_0132 at 131.840 kb on + strand, within Psest_0132 at 131.840 kb on + strand, within Psest_0132 at 131.841 kb on - strand, within Psest_0132 at 131.841 kb on - strand, within Psest_0132 at 132.152 kb on + strand at 132.152 kb on + strand at 132.152 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.260 kb on + strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.261 kb on - strand at 132.283 kb on + strand at 132.283 kb on + strand at 132.361 kb on - strand, within Psest_0133 at 132.361 kb on - strand, within Psest_0133 at 133.016 kb on + strand, within Psest_0134 at 133.016 kb on + strand, within Psest_0134 at 133.016 kb on + strand, within Psest_0134 at 133.016 kb on + strand, within Psest_0134 at 133.017 kb on - strand, within Psest_0134 at 133.017 kb on - strand, within Psest_0134 at 133.485 kb on - strand, within Psest_0134 at 133.511 kb on + strand, within Psest_0134 at 133.943 kb on - strand, within Psest_0134 at 134.069 kb on + strand, within Psest_0134 at 134.083 kb on + strand, within Psest_0134 at 134.084 kb on - strand, within Psest_0134 at 134.084 kb on - strand, within Psest_0134 at 134.084 kb on - strand, within Psest_0134 at 134.420 kb on + strand at 134.420 kb on + strand at 134.421 kb on - strand at 134.421 kb on - strand at 134.424 kb on + strand at 134.427 kb on + strand at 134.428 kb on - strand at 134.428 kb on - strand at 134.486 kb on + strand at 134.487 kb on - strand at 134.519 kb on + strand at 134.519 kb on + strand at 134.520 kb on - strand at 134.520 kb on - strand at 134.636 kb on + strand at 134.656 kb on - strand at 134.670 kb on + strand at 134.670 kb on + strand at 134.670 kb on + strand at 134.682 kb on + strand at 134.682 kb on + strand at 134.682 kb on + strand at 134.682 kb on + strand at 134.682 kb on + strand at 134.682 kb on + strand at 134.683 kb on - strand at 134.686 kb on + strand at 134.686 kb on + strand at 134.686 kb on + strand at 134.686 kb on + strand at 134.687 kb on - strand at 134.687 kb on - strand at 134.687 kb on - strand at 134.687 kb on - strand at 134.687 kb on - strand at 134.687 kb on - strand at 134.687 kb on - strand at 134.687 kb on - strand at 134.687 kb on - strand at 134.692 kb on + strand at 134.692 kb on + strand at 134.692 kb on + strand at 134.692 kb on + strand at 134.693 kb on - strand at 134.696 kb on + strand at 134.697 kb on - strand at 134.722 kb on - strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.730 kb on - strand at 134.877 kb on - strand, within Psest_0135 at 134.920 kb on + strand, within Psest_0135 at 134.920 kb on + strand, within Psest_0135 at 135.008 kb on + strand, within Psest_0135 at 135.008 kb on + strand, within Psest_0135 at 135.008 kb on + strand, within Psest_0135 at 135.008 kb on + strand, within Psest_0135 at 135.008 kb on + strand, within Psest_0135 at 135.008 kb on + strand, within Psest_0135 at 135.008 kb on + strand, within Psest_0135 at 135.008 kb on + strand, within Psest_0135 at 135.008 kb on + strand, within Psest_0135 at 135.008 kb on + strand, within Psest_0135 at 135.009 kb on - strand, within Psest_0135 at 135.009 kb on - strand, within Psest_0135 at 135.009 kb on - strand, within Psest_0135 at 135.009 kb on - strand, within Psest_0135 at 135.009 kb on - strand, within Psest_0135 at 135.009 kb on - strand, within Psest_0135 at 135.009 kb on - strand, within Psest_0135 at 135.009 kb on - strand, within Psest_0135 at 135.081 kb on + strand, within Psest_0135 at 135.089 kb on + strand, within Psest_0135 at 135.090 kb on - strand, within Psest_0135 at 135.090 kb on - strand, within Psest_0135 at 135.090 kb on - strand, within Psest_0135 at 135.146 kb on + strand, within Psest_0135 at 135.146 kb on + strand, within Psest_0135 at 135.146 kb on + strand, within Psest_0135 at 135.146 kb on + strand, within Psest_0135 at 135.146 kb on + strand, within Psest_0135 at 135.146 kb on + strand, within Psest_0135 at 135.146 kb on + strand, within Psest_0135 at 135.146 kb on + strand, within Psest_0135 at 135.146 kb on + strand, within Psest_0135 at 135.147 kb on - strand, within Psest_0135 at 135.147 kb on - strand, within Psest_0135 at 135.147 kb on - strand, within Psest_0135 at 135.147 kb on - strand, within Psest_0135 at 135.147 kb on - strand, within Psest_0135 at 135.168 kb on + strand, within Psest_0135 at 135.169 kb on - strand, within Psest_0135 at 135.361 kb on + strand, within Psest_0135 at 135.362 kb on - strand, within Psest_0135
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM remove 131,817 - Psest_0132 0.70 +1.1 131,828 + Psest_0132 0.71 +0.4 131,828 + Psest_0132 0.71 -0.1 131,828 + Psest_0132 0.71 -0.1 131,828 + Psest_0132 0.71 +0.2 131,828 + Psest_0132 0.71 +0.0 131,828 + Psest_0132 0.71 +0.6 131,828 + Psest_0132 0.71 +0.7 131,828 + Psest_0132 0.71 +0.8 131,828 + Psest_0132 0.71 +0.7 131,828 + Psest_0132 0.71 +0.6 131,828 + Psest_0132 0.71 +0.2 131,828 + Psest_0132 0.71 +0.1 131,828 + Psest_0132 0.71 -0.1 131,828 + Psest_0132 0.71 +1.0 131,829 - Psest_0132 0.71 -0.6 131,829 - Psest_0132 0.71 -0.8 131,829 - Psest_0132 0.71 -0.9 131,829 - Psest_0132 0.71 -1.4 131,829 - Psest_0132 0.71 -0.8 131,829 - Psest_0132 0.71 +0.2 131,829 - Psest_0132 0.71 +0.5 131,829 - Psest_0132 0.71 -0.7 131,829 - Psest_0132 0.71 -0.5 131,829 - Psest_0132 0.71 -2.0 131,829 - Psest_0132 0.71 -1.3 131,829 - Psest_0132 0.71 -1.1 131,840 + Psest_0132 0.72 -0.4 131,840 + Psest_0132 0.72 +1.4 131,840 + Psest_0132 0.72 +0.7 131,840 + Psest_0132 0.72 -3.2 131,840 + Psest_0132 0.72 +1.0 131,841 - Psest_0132 0.72 -1.7 131,841 - Psest_0132 0.72 -1.1 132,152 + +0.1 132,152 + -0.9 132,152 + -0.9 132,260 + -0.4 132,260 + +0.1 132,260 + -1.9 132,260 + -0.3 132,260 + -1.3 132,260 + +0.3 132,260 + -0.1 132,260 + -0.4 132,260 + +0.2 132,260 + -0.5 132,260 + +0.1 132,260 + -0.6 132,260 + +0.1 132,260 + -0.9 132,260 + -0.2 132,260 + -0.9 132,260 + -0.7 132,260 + +0.3 132,261 - -0.5 132,261 - -0.2 132,261 - -0.8 132,261 - -1.1 132,261 - -1.0 132,261 - -0.7 132,261 - -0.5 132,261 - -1.1 132,261 - +0.2 132,261 - +0.2 132,261 - -1.0 132,261 - -0.9 132,261 - -1.0 132,261 - -1.7 132,283 + -0.3 132,283 + -0.0 132,361 - Psest_0133 0.15 +0.1 132,361 - Psest_0133 0.15 -0.6 133,016 + Psest_0134 0.13 +1.0 133,016 + Psest_0134 0.13 +0.9 133,016 + Psest_0134 0.13 +1.2 133,016 + Psest_0134 0.13 +0.4 133,017 - Psest_0134 0.13 +2.9 133,017 - Psest_0134 0.13 +0.2 133,485 - Psest_0134 0.43 +0.8 133,511 + Psest_0134 0.45 +1.1 133,943 - Psest_0134 0.73 -0.1 134,069 + Psest_0134 0.81 +0.2 134,083 + Psest_0134 0.82 +0.4 134,084 - Psest_0134 0.82 +0.2 134,084 - Psest_0134 0.82 +0.4 134,084 - Psest_0134 0.82 +0.7 134,420 + +0.7 134,420 + -0.2 134,421 - +0.0 134,421 - +0.5 134,424 + -0.1 134,427 + +1.0 134,428 - +0.1 134,428 - -0.1 134,486 + -0.9 134,487 - -1.6 134,519 + -0.9 134,519 + -1.0 134,520 - -0.2 134,520 - +0.2 134,636 + +0.2 134,656 - -2.4 134,670 + +0.6 134,670 + -0.1 134,670 + -0.2 134,682 + +0.7 134,682 + -0.3 134,682 + +0.2 134,682 + +0.2 134,682 + +0.6 134,682 + +0.2 134,683 - -0.9 134,686 + +0.3 134,686 + +0.9 134,686 + +0.9 134,686 + +0.9 134,687 - -1.4 134,687 - -1.0 134,687 - -2.0 134,687 - -0.4 134,687 - -0.8 134,687 - -1.8 134,687 - -1.1 134,687 - -1.6 134,687 - -1.8 134,692 + -0.2 134,692 + +0.5 134,692 + +1.6 134,692 + +0.6 134,693 - -0.6 134,696 + +1.2 134,697 - -0.8 134,722 - -1.0 134,728 - -0.3 134,728 - -1.7 134,730 - -1.5 134,877 - Psest_0135 0.14 -0.1 134,920 + Psest_0135 0.19 +0.9 134,920 + Psest_0135 0.19 +1.4 135,008 + Psest_0135 0.29 +0.3 135,008 + Psest_0135 0.29 -0.7 135,008 + Psest_0135 0.29 -0.4 135,008 + Psest_0135 0.29 +0.8 135,008 + Psest_0135 0.29 +0.6 135,008 + Psest_0135 0.29 +1.0 135,008 + Psest_0135 0.29 -0.3 135,008 + Psest_0135 0.29 +0.6 135,008 + Psest_0135 0.29 -0.1 135,008 + Psest_0135 0.29 +0.3 135,009 - Psest_0135 0.29 -0.7 135,009 - Psest_0135 0.29 -0.7 135,009 - Psest_0135 0.29 -0.2 135,009 - Psest_0135 0.29 -1.0 135,009 - Psest_0135 0.29 -0.8 135,009 - Psest_0135 0.29 +0.3 135,009 - Psest_0135 0.29 -1.2 135,009 - Psest_0135 0.29 -0.1 135,081 + Psest_0135 0.37 +0.5 135,089 + Psest_0135 0.38 -0.1 135,090 - Psest_0135 0.38 -0.4 135,090 - Psest_0135 0.38 -1.0 135,090 - Psest_0135 0.38 -1.3 135,146 + Psest_0135 0.44 -0.6 135,146 + Psest_0135 0.44 +0.3 135,146 + Psest_0135 0.44 -1.0 135,146 + Psest_0135 0.44 +0.8 135,146 + Psest_0135 0.44 +0.7 135,146 + Psest_0135 0.44 +0.9 135,146 + Psest_0135 0.44 +0.7 135,146 + Psest_0135 0.44 +1.3 135,146 + Psest_0135 0.44 +0.3 135,147 - Psest_0135 0.44 +0.6 135,147 - Psest_0135 0.44 +1.2 135,147 - Psest_0135 0.44 -0.6 135,147 - Psest_0135 0.44 -0.3 135,147 - Psest_0135 0.44 +0.7 135,168 + Psest_0135 0.46 -0.5 135,169 - Psest_0135 0.47 -0.3 135,361 + Psest_0135 0.68 +0.2 135,362 - Psest_0135 0.68 +1.2
Or see this region's nucleotide sequence