Experiment: Def Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1308 and Psest_1309 are separated by 2 nucleotides Psest_1309 and Psest_1310 overlap by 4 nucleotides Psest_1310 and Psest_1311 overlap by 4 nucleotides
Psest_1308: Psest_1308 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,409,160 to 1,409,861
_1308
Psest_1309: Psest_1309 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,409,864 to 1,410,631
_1309
Psest_1310: Psest_1310 - ABC-type branched-chain amino acid transport system, permease component, at 1,410,628 to 1,411,884
_1310
Psest_1311: Psest_1311 - Branched-chain amino acid ABC-type transport system, permease components, at 1,411,881 to 1,412,804
_1311
Position (kb)
1410
1411
1412 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1409.830 kb on + strand at 1409.865 kb on + strand at 1409.865 kb on + strand at 1409.865 kb on + strand at 1409.865 kb on + strand at 1409.865 kb on + strand at 1409.866 kb on - strand at 1409.866 kb on - strand at 1409.958 kb on + strand, within Psest_1309 at 1409.958 kb on + strand, within Psest_1309 at 1409.958 kb on + strand, within Psest_1309 at 1409.958 kb on + strand, within Psest_1309 at 1409.958 kb on + strand, within Psest_1309 at 1409.958 kb on + strand, within Psest_1309 at 1409.958 kb on + strand, within Psest_1309 at 1409.958 kb on + strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1409.959 kb on - strand, within Psest_1309 at 1410.166 kb on - strand, within Psest_1309 at 1410.302 kb on - strand, within Psest_1309 at 1410.383 kb on + strand, within Psest_1309 at 1410.384 kb on - strand, within Psest_1309 at 1410.469 kb on - strand, within Psest_1309 at 1410.548 kb on + strand, within Psest_1309 at 1410.549 kb on - strand, within Psest_1309 at 1410.608 kb on + strand at 1411.118 kb on + strand, within Psest_1310 at 1411.118 kb on + strand, within Psest_1310 at 1411.119 kb on - strand, within Psest_1310 at 1411.403 kb on + strand, within Psest_1310 at 1411.403 kb on + strand, within Psest_1310 at 1411.421 kb on + strand, within Psest_1310 at 1411.421 kb on + strand, within Psest_1310 at 1411.421 kb on + strand, within Psest_1310 at 1411.421 kb on + strand, within Psest_1310 at 1411.422 kb on - strand, within Psest_1310 at 1411.422 kb on - strand, within Psest_1310 at 1411.422 kb on - strand, within Psest_1310 at 1411.422 kb on - strand, within Psest_1310 at 1411.422 kb on - strand, within Psest_1310 at 1411.422 kb on - strand, within Psest_1310 at 1411.422 kb on - strand, within Psest_1310 at 1411.442 kb on + strand, within Psest_1310 at 1411.443 kb on - strand, within Psest_1310 at 1411.454 kb on + strand, within Psest_1310 at 1411.517 kb on + strand, within Psest_1310 at 1411.518 kb on - strand, within Psest_1310 at 1411.518 kb on - strand, within Psest_1310 at 1411.518 kb on - strand, within Psest_1310 at 1411.562 kb on + strand, within Psest_1310 at 1411.884 kb on + strand at 1411.885 kb on - strand at 1411.948 kb on - strand at 1411.972 kb on + strand at 1411.972 kb on + strand at 1411.972 kb on + strand at 1411.973 kb on - strand at 1412.019 kb on + strand, within Psest_1311 at 1412.020 kb on - strand, within Psest_1311 at 1412.020 kb on - strand, within Psest_1311 at 1412.020 kb on - strand, within Psest_1311 at 1412.020 kb on - strand, within Psest_1311 at 1412.020 kb on - strand, within Psest_1311 at 1412.302 kb on + strand, within Psest_1311 at 1412.302 kb on + strand, within Psest_1311 at 1412.302 kb on + strand, within Psest_1311 at 1412.303 kb on - strand, within Psest_1311 at 1412.303 kb on - strand, within Psest_1311 at 1412.344 kb on + strand, within Psest_1311 at 1412.344 kb on + strand, within Psest_1311 at 1412.344 kb on + strand, within Psest_1311 at 1412.345 kb on - strand, within Psest_1311 at 1412.345 kb on - strand, within Psest_1311 at 1412.345 kb on - strand, within Psest_1311 at 1412.345 kb on - strand, within Psest_1311 at 1412.345 kb on - strand, within Psest_1311 at 1412.653 kb on + strand, within Psest_1311 at 1412.653 kb on + strand, within Psest_1311 at 1412.653 kb on + strand, within Psest_1311 at 1412.653 kb on + strand, within Psest_1311 at 1412.653 kb on + strand, within Psest_1311 at 1412.653 kb on + strand, within Psest_1311 at 1412.654 kb on - strand, within Psest_1311 at 1412.654 kb on - strand, within Psest_1311 at 1412.654 kb on - strand, within Psest_1311 at 1412.654 kb on - strand, within Psest_1311 at 1412.654 kb on - strand, within Psest_1311 at 1412.668 kb on + strand, within Psest_1311 at 1412.668 kb on + strand, within Psest_1311 at 1412.668 kb on + strand, within Psest_1311 at 1412.668 kb on + strand, within Psest_1311 at 1412.668 kb on + strand, within Psest_1311 at 1412.668 kb on + strand, within Psest_1311 at 1412.668 kb on + strand, within Psest_1311 at 1412.668 kb on + strand, within Psest_1311 at 1412.668 kb on + strand, within Psest_1311 at 1412.668 kb on + strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.669 kb on - strand, within Psest_1311 at 1412.711 kb on - strand, within Psest_1311 at 1412.711 kb on - strand, within Psest_1311 at 1412.744 kb on - strand at 1412.781 kb on + strand at 1412.781 kb on + strand at 1412.781 kb on + strand at 1412.781 kb on + strand at 1412.782 kb on - strand at 1412.782 kb on - strand at 1412.782 kb on - strand at 1412.782 kb on - strand at 1412.782 kb on - strand at 1412.782 kb on - strand at 1412.782 kb on - strand at 1412.785 kb on + strand at 1412.791 kb on + strand at 1412.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM remove 1,409,830 + -0.3 1,409,865 + -1.3 1,409,865 + +0.2 1,409,865 + -0.2 1,409,865 + +0.5 1,409,865 + -0.1 1,409,866 - +1.6 1,409,866 - +2.7 1,409,958 + Psest_1309 0.12 -0.5 1,409,958 + Psest_1309 0.12 -0.8 1,409,958 + Psest_1309 0.12 -0.0 1,409,958 + Psest_1309 0.12 +0.7 1,409,958 + Psest_1309 0.12 -2.9 1,409,958 + Psest_1309 0.12 -1.4 1,409,958 + Psest_1309 0.12 -0.3 1,409,958 + Psest_1309 0.12 -0.0 1,409,959 - Psest_1309 0.12 +1.1 1,409,959 - Psest_1309 0.12 +1.2 1,409,959 - Psest_1309 0.12 +0.6 1,409,959 - Psest_1309 0.12 +0.9 1,409,959 - Psest_1309 0.12 +1.2 1,409,959 - Psest_1309 0.12 +0.7 1,409,959 - Psest_1309 0.12 +1.3 1,409,959 - Psest_1309 0.12 +1.0 1,409,959 - Psest_1309 0.12 +1.5 1,409,959 - Psest_1309 0.12 +1.3 1,409,959 - Psest_1309 0.12 +0.8 1,409,959 - Psest_1309 0.12 +1.0 1,409,959 - Psest_1309 0.12 +0.2 1,410,166 - Psest_1309 0.39 +0.5 1,410,302 - Psest_1309 0.57 +0.4 1,410,383 + Psest_1309 0.68 +0.5 1,410,384 - Psest_1309 0.68 +0.3 1,410,469 - Psest_1309 0.79 +1.6 1,410,548 + Psest_1309 0.89 -0.7 1,410,549 - Psest_1309 0.89 -1.3 1,410,608 + -0.9 1,411,118 + Psest_1310 0.39 -0.3 1,411,118 + Psest_1310 0.39 +1.0 1,411,119 - Psest_1310 0.39 -0.1 1,411,403 + Psest_1310 0.62 -1.7 1,411,403 + Psest_1310 0.62 -1.0 1,411,421 + Psest_1310 0.63 +0.3 1,411,421 + Psest_1310 0.63 -0.8 1,411,421 + Psest_1310 0.63 +0.1 1,411,421 + Psest_1310 0.63 +1.7 1,411,422 - Psest_1310 0.63 +0.8 1,411,422 - Psest_1310 0.63 -0.3 1,411,422 - Psest_1310 0.63 -0.6 1,411,422 - Psest_1310 0.63 -0.3 1,411,422 - Psest_1310 0.63 -0.2 1,411,422 - Psest_1310 0.63 +0.4 1,411,422 - Psest_1310 0.63 -0.1 1,411,442 + Psest_1310 0.65 +0.2 1,411,443 - Psest_1310 0.65 +0.5 1,411,454 + Psest_1310 0.66 +0.3 1,411,517 + Psest_1310 0.71 -0.2 1,411,518 - Psest_1310 0.71 +0.9 1,411,518 - Psest_1310 0.71 +0.2 1,411,518 - Psest_1310 0.71 +1.5 1,411,562 + Psest_1310 0.74 -0.7 1,411,884 + -0.2 1,411,885 - +0.6 1,411,948 - -0.9 1,411,972 + -0.4 1,411,972 + -0.1 1,411,972 + -0.2 1,411,973 - -0.1 1,412,019 + Psest_1311 0.15 +0.1 1,412,020 - Psest_1311 0.15 +0.5 1,412,020 - Psest_1311 0.15 +1.1 1,412,020 - Psest_1311 0.15 -0.4 1,412,020 - Psest_1311 0.15 +1.0 1,412,020 - Psest_1311 0.15 +0.9 1,412,302 + Psest_1311 0.46 -0.3 1,412,302 + Psest_1311 0.46 -0.1 1,412,302 + Psest_1311 0.46 -1.4 1,412,303 - Psest_1311 0.46 +0.8 1,412,303 - Psest_1311 0.46 +0.8 1,412,344 + Psest_1311 0.50 -1.8 1,412,344 + Psest_1311 0.50 -0.8 1,412,344 + Psest_1311 0.50 +1.2 1,412,345 - Psest_1311 0.50 +0.5 1,412,345 - Psest_1311 0.50 +0.7 1,412,345 - Psest_1311 0.50 -0.5 1,412,345 - Psest_1311 0.50 -0.2 1,412,345 - Psest_1311 0.50 -0.5 1,412,653 + Psest_1311 0.84 -1.0 1,412,653 + Psest_1311 0.84 -1.5 1,412,653 + Psest_1311 0.84 +0.0 1,412,653 + Psest_1311 0.84 -0.0 1,412,653 + Psest_1311 0.84 -1.1 1,412,653 + Psest_1311 0.84 +0.3 1,412,654 - Psest_1311 0.84 +0.9 1,412,654 - Psest_1311 0.84 -0.9 1,412,654 - Psest_1311 0.84 -1.8 1,412,654 - Psest_1311 0.84 -1.2 1,412,654 - Psest_1311 0.84 -0.4 1,412,668 + Psest_1311 0.85 +0.9 1,412,668 + Psest_1311 0.85 +0.1 1,412,668 + Psest_1311 0.85 +0.5 1,412,668 + Psest_1311 0.85 +0.2 1,412,668 + Psest_1311 0.85 +0.1 1,412,668 + Psest_1311 0.85 -2.5 1,412,668 + Psest_1311 0.85 -0.3 1,412,668 + Psest_1311 0.85 -0.5 1,412,668 + Psest_1311 0.85 -1.3 1,412,668 + Psest_1311 0.85 -1.2 1,412,669 - Psest_1311 0.85 -0.3 1,412,669 - Psest_1311 0.85 -0.3 1,412,669 - Psest_1311 0.85 +0.5 1,412,669 - Psest_1311 0.85 -0.3 1,412,669 - Psest_1311 0.85 +0.9 1,412,669 - Psest_1311 0.85 +0.6 1,412,669 - Psest_1311 0.85 -1.4 1,412,669 - Psest_1311 0.85 +0.0 1,412,669 - Psest_1311 0.85 -0.5 1,412,669 - Psest_1311 0.85 -0.5 1,412,669 - Psest_1311 0.85 +0.4 1,412,669 - Psest_1311 0.85 +0.7 1,412,711 - Psest_1311 0.90 -0.2 1,412,711 - Psest_1311 0.90 +0.2 1,412,744 - -0.6 1,412,781 + -0.1 1,412,781 + +0.8 1,412,781 + +0.4 1,412,781 + -0.4 1,412,782 - -0.5 1,412,782 - -0.2 1,412,782 - -1.2 1,412,782 - -0.2 1,412,782 - -0.2 1,412,782 - -0.4 1,412,782 - -1.0 1,412,785 + -0.7 1,412,791 + +0.3 1,412,792 - -0.9
Or see this region's nucleotide sequence