Experiment: Def Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1290 and Psest_1291 overlap by 4 nucleotides Psest_1291 and Psest_1292 are separated by 272 nucleotides Psest_1292 and Psest_1293 are separated by 189 nucleotides
Psest_1290: Psest_1290 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,395,602 to 1,396,699
_1290
Psest_1291: Psest_1291 - ornithine carbamoyltransferase, at 1,396,696 to 1,397,616
_1291
Psest_1292: Psest_1292 - monothiol glutaredoxin, Grx4 family, at 1,397,889 to 1,398,215
_1292
Psest_1293: Psest_1293 - VanZ like family., at 1,398,405 to 1,398,767
_1293
Position (kb)
1396
1397
1398 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1396.710 kb on - strand at 1397.624 kb on - strand at 1397.624 kb on - strand at 1397.624 kb on - strand at 1397.758 kb on + strand at 1397.759 kb on - strand at 1397.811 kb on - strand at 1397.884 kb on - strand at 1397.884 kb on - strand at 1397.942 kb on - strand, within Psest_1292 at 1397.942 kb on - strand, within Psest_1292 at 1397.942 kb on - strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.943 kb on + strand, within Psest_1292 at 1397.944 kb on - strand, within Psest_1292 at 1397.944 kb on - strand, within Psest_1292 at 1397.944 kb on - strand, within Psest_1292 at 1397.944 kb on - strand, within Psest_1292 at 1397.944 kb on - strand, within Psest_1292 at 1397.944 kb on - strand, within Psest_1292 at 1397.944 kb on - strand, within Psest_1292 at 1397.944 kb on - strand, within Psest_1292 at 1397.944 kb on - strand, within Psest_1292 at 1398.078 kb on + strand, within Psest_1292 at 1398.079 kb on - strand, within Psest_1292 at 1398.079 kb on - strand, within Psest_1292 at 1398.290 kb on + strand at 1398.297 kb on + strand at 1398.411 kb on + strand at 1398.412 kb on - strand at 1398.412 kb on - strand at 1398.412 kb on - strand at 1398.412 kb on - strand at 1398.412 kb on - strand at 1398.412 kb on - strand at 1398.545 kb on + strand, within Psest_1293 at 1398.545 kb on + strand, within Psest_1293
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM remove 1,396,710 - -0.7 1,397,624 - -1.8 1,397,624 - -0.4 1,397,624 - -1.1 1,397,758 + +0.8 1,397,759 - -0.4 1,397,811 - -1.5 1,397,884 - -0.3 1,397,884 - -1.4 1,397,942 - Psest_1292 0.16 -3.8 1,397,942 - Psest_1292 0.16 -0.7 1,397,942 - Psest_1292 0.16 -2.8 1,397,943 + Psest_1292 0.17 -1.8 1,397,943 + Psest_1292 0.17 -1.3 1,397,943 + Psest_1292 0.17 -0.2 1,397,943 + Psest_1292 0.17 -0.2 1,397,943 + Psest_1292 0.17 -1.0 1,397,943 + Psest_1292 0.17 -2.2 1,397,943 + Psest_1292 0.17 +0.1 1,397,943 + Psest_1292 0.17 -1.9 1,397,943 + Psest_1292 0.17 -1.7 1,397,943 + Psest_1292 0.17 -1.4 1,397,943 + Psest_1292 0.17 -2.2 1,397,943 + Psest_1292 0.17 -2.5 1,397,943 + Psest_1292 0.17 -1.3 1,397,943 + Psest_1292 0.17 -1.0 1,397,943 + Psest_1292 0.17 -2.5 1,397,943 + Psest_1292 0.17 -1.5 1,397,943 + Psest_1292 0.17 -0.8 1,397,943 + Psest_1292 0.17 -4.0 1,397,943 + Psest_1292 0.17 -2.0 1,397,943 + Psest_1292 0.17 -2.5 1,397,943 + Psest_1292 0.17 -0.8 1,397,943 + Psest_1292 0.17 -1.0 1,397,943 + Psest_1292 0.17 -1.1 1,397,943 + Psest_1292 0.17 -1.6 1,397,943 + Psest_1292 0.17 -0.8 1,397,943 + Psest_1292 0.17 -1.7 1,397,943 + Psest_1292 0.17 -0.2 1,397,943 + Psest_1292 0.17 -2.2 1,397,944 - Psest_1292 0.17 -1.0 1,397,944 - Psest_1292 0.17 -1.7 1,397,944 - Psest_1292 0.17 -1.3 1,397,944 - Psest_1292 0.17 -2.2 1,397,944 - Psest_1292 0.17 -2.5 1,397,944 - Psest_1292 0.17 -2.7 1,397,944 - Psest_1292 0.17 -1.6 1,397,944 - Psest_1292 0.17 -1.2 1,397,944 - Psest_1292 0.17 -0.9 1,398,078 + Psest_1292 0.58 -2.1 1,398,079 - Psest_1292 0.58 -2.0 1,398,079 - Psest_1292 0.58 -1.5 1,398,290 + -0.8 1,398,297 + +0.0 1,398,411 + +0.1 1,398,412 - +0.8 1,398,412 - +2.1 1,398,412 - +1.4 1,398,412 - +1.7 1,398,412 - +0.5 1,398,412 - +0.9 1,398,545 + Psest_1293 0.39 +0.8 1,398,545 + Psest_1293 0.39 -0.2
Or see this region's nucleotide sequence