Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1182

Experiment: Def Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1181 and Psest_1182 are separated by 252 nucleotidesPsest_1182 and Psest_1183 are separated by 5 nucleotidesPsest_1183 and Psest_1184 are separated by 16 nucleotides Psest_1181: Psest_1181 - Glyoxylate carboligase (EC 4.1.1.47) (from data), at 1,283,252 to 1,285,033 _1181 Psest_1182: Psest_1182 - Transcriptional regulator, at 1,285,286 to 1,286,194 _1182 Psest_1183: Psest_1183 - hydroxyisourate hydrolase, at 1,286,200 to 1,286,610 _1183 Psest_1184: Psest_1184 - Uncharacterized protein, possibly involved in utilization of glycolate and propanediol, at 1,286,627 to 1,287,166 _1184 Position (kb) 1285 1286 1287Strain fitness (log2 ratio) -2 -1 0 1 2at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.390 kb on + strand, within Psest_1181at 1284.391 kb on - strand, within Psest_1181at 1284.391 kb on - strand, within Psest_1181at 1284.391 kb on - strand, within Psest_1181at 1284.391 kb on - strand, within Psest_1181at 1284.391 kb on - strand, within Psest_1181at 1284.391 kb on - strand, within Psest_1181at 1284.391 kb on - strand, within Psest_1181at 1284.391 kb on - strand, within Psest_1181at 1284.391 kb on - strand, within Psest_1181at 1284.483 kb on + strand, within Psest_1181at 1284.484 kb on - strand, within Psest_1181at 1284.501 kb on + strand, within Psest_1181at 1284.703 kb on + strand, within Psest_1181at 1284.704 kb on - strand, within Psest_1181at 1284.704 kb on - strand, within Psest_1181at 1284.706 kb on - strand, within Psest_1181at 1284.852 kb on + strand, within Psest_1181at 1284.933 kb on + strandat 1285.163 kb on + strandat 1285.171 kb on + strandat 1285.171 kb on + strandat 1285.171 kb on + strandat 1285.172 kb on - strandat 1285.207 kb on - strandat 1285.272 kb on - strandat 1285.479 kb on - strand, within Psest_1182at 1285.604 kb on - strand, within Psest_1182at 1285.742 kb on + strand, within Psest_1182at 1285.742 kb on + strand, within Psest_1182at 1285.742 kb on + strand, within Psest_1182at 1285.742 kb on + strand, within Psest_1182at 1285.742 kb on + strand, within Psest_1182at 1285.743 kb on - strand, within Psest_1182at 1285.743 kb on - strand, within Psest_1182at 1285.743 kb on - strand, within Psest_1182at 1285.743 kb on - strand, within Psest_1182at 1285.743 kb on - strand, within Psest_1182at 1285.743 kb on - strand, within Psest_1182at 1286.067 kb on - strand, within Psest_1182at 1286.067 kb on - strand, within Psest_1182at 1286.081 kb on + strand, within Psest_1182at 1286.115 kb on - strandat 1286.162 kb on + strandat 1286.162 kb on + strandat 1286.162 kb on + strandat 1286.162 kb on + strandat 1286.162 kb on + strandat 1286.162 kb on + strandat 1286.163 kb on - strandat 1286.163 kb on - strandat 1286.163 kb on - strandat 1286.163 kb on - strandat 1286.361 kb on - strand, within Psest_1183at 1286.364 kb on + strand, within Psest_1183at 1286.365 kb on - strand, within Psest_1183at 1286.365 kb on - strand, within Psest_1183at 1286.599 kb on + strandat 1286.599 kb on + strandat 1286.600 kb on - strandat 1286.600 kb on - strandat 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.089 kb on + strand, within Psest_1184at 1287.090 kb on - strand, within Psest_1184at 1287.090 kb on - strand, within Psest_1184at 1287.090 kb on - strand, within Psest_1184

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzethonium chloride 0.008 mM
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1,284,390 + Psest_1181 0.64 -1.6
1,284,390 + Psest_1181 0.64 +0.4
1,284,390 + Psest_1181 0.64 +0.4
1,284,390 + Psest_1181 0.64 -0.1
1,284,390 + Psest_1181 0.64 -0.0
1,284,390 + Psest_1181 0.64 -0.1
1,284,390 + Psest_1181 0.64 +0.7
1,284,390 + Psest_1181 0.64 -0.3
1,284,390 + Psest_1181 0.64 -0.1
1,284,390 + Psest_1181 0.64 +0.9
1,284,390 + Psest_1181 0.64 -0.7
1,284,390 + Psest_1181 0.64 -0.4
1,284,390 + Psest_1181 0.64 -0.8
1,284,391 - Psest_1181 0.64 +0.7
1,284,391 - Psest_1181 0.64 +0.7
1,284,391 - Psest_1181 0.64 +1.3
1,284,391 - Psest_1181 0.64 +0.4
1,284,391 - Psest_1181 0.64 -0.5
1,284,391 - Psest_1181 0.64 +0.1
1,284,391 - Psest_1181 0.64 +0.0
1,284,391 - Psest_1181 0.64 +0.4
1,284,391 - Psest_1181 0.64 -1.2
1,284,483 + Psest_1181 0.69 -0.6
1,284,484 - Psest_1181 0.69 +1.1
1,284,501 + Psest_1181 0.70 -0.4
1,284,703 + Psest_1181 0.81 +0.0
1,284,704 - Psest_1181 0.81 +0.8
1,284,704 - Psest_1181 0.81 -0.8
1,284,706 - Psest_1181 0.82 +0.1
1,284,852 + Psest_1181 0.90 -0.0
1,284,933 + -0.2
1,285,163 + -1.5
1,285,171 + -0.2
1,285,171 + -0.1
1,285,171 + -0.4
1,285,172 - +1.3
1,285,207 - +1.1
1,285,272 - +1.8
1,285,479 - Psest_1182 0.21 -1.2
1,285,604 - Psest_1182 0.35 -0.2
1,285,742 + Psest_1182 0.50 +0.7
1,285,742 + Psest_1182 0.50 +0.2
1,285,742 + Psest_1182 0.50 -0.4
1,285,742 + Psest_1182 0.50 +1.0
1,285,742 + Psest_1182 0.50 -0.9
1,285,743 - Psest_1182 0.50 -0.6
1,285,743 - Psest_1182 0.50 +1.2
1,285,743 - Psest_1182 0.50 +0.5
1,285,743 - Psest_1182 0.50 +0.9
1,285,743 - Psest_1182 0.50 +0.6
1,285,743 - Psest_1182 0.50 +0.3
1,286,067 - Psest_1182 0.86 +0.5
1,286,067 - Psest_1182 0.86 -1.2
1,286,081 + Psest_1182 0.87 +1.3
1,286,115 - +1.5
1,286,162 + -0.2
1,286,162 + -0.2
1,286,162 + +0.8
1,286,162 + +0.5
1,286,162 + -0.2
1,286,162 + -1.8
1,286,163 - -0.5
1,286,163 - +0.6
1,286,163 - +1.1
1,286,163 - -0.7
1,286,361 - Psest_1183 0.39 -1.9
1,286,364 + Psest_1183 0.40 +1.5
1,286,365 - Psest_1183 0.40 -1.1
1,286,365 - Psest_1183 0.40 -1.3
1,286,599 + +1.7
1,286,599 + -1.1
1,286,600 - +0.2
1,286,600 - -0.5
1,287,089 + Psest_1184 0.86 +1.0
1,287,089 + Psest_1184 0.86 +1.3
1,287,089 + Psest_1184 0.86 -0.4
1,287,089 + Psest_1184 0.86 +0.3
1,287,089 + Psest_1184 0.86 +0.1
1,287,089 + Psest_1184 0.86 +0.8
1,287,089 + Psest_1184 0.86 +0.5
1,287,089 + Psest_1184 0.86 +1.9
1,287,090 - Psest_1184 0.86 -0.6
1,287,090 - Psest_1184 0.86 +0.4
1,287,090 - Psest_1184 0.86 +0.4

Or see this region's nucleotide sequence