Experiment: RCH2 defined media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0358 and Psest_0359 are separated by 116 nucleotides Psest_0359 and Psest_0360 are separated by 57 nucleotides Psest_0360 and Psest_0361 are separated by 223 nucleotides
Psest_0358: Psest_0358 - Neutral trehalase, at 383,839 to 385,443
_0358
Psest_0359: Psest_0359 - Transcriptional regulators, at 385,560 to 386,312
_0359
Psest_0360: Psest_0360 - Predicted permease, DMT superfamily, at 386,370 to 387,272
_0360
Psest_0361: Psest_0361 - TRAP transporter, DctM subunit, at 387,496 to 388,776
_0361
Position (kb) 386
387
388 Strain fitness (log2 ratio) -2
-1
0
1
2 at 385.442 kb on - strand at 385.470 kb on + strand at 385.470 kb on + strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.471 kb on - strand at 385.497 kb on + strand at 385.506 kb on + strand at 385.520 kb on + strand at 385.521 kb on - strand at 386.190 kb on + strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.191 kb on - strand, within Psest_0359 at 386.566 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.676 kb on + strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 386.677 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.005 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.154 kb on - strand, within Psest_0360 at 387.284 kb on - strand at 387.333 kb on - strand at 387.383 kb on + strand at 387.383 kb on + strand at 387.392 kb on - strand at 387.392 kb on - strand at 387.392 kb on - strand at 387.424 kb on - strand at 387.432 kb on - strand at 387.432 kb on - strand at 387.505 kb on + strand at 387.505 kb on + strand at 387.538 kb on - strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.539 kb on + strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.540 kb on - strand at 387.575 kb on + strand at 387.575 kb on + strand at 387.596 kb on - strand at 387.596 kb on - strand at 387.664 kb on - strand, within Psest_0361 at 387.836 kb on + strand, within Psest_0361 at 387.905 kb on + strand, within Psest_0361 at 387.906 kb on - strand, within Psest_0361 at 387.998 kb on + strand, within Psest_0361 at 387.998 kb on + strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 387.999 kb on - strand, within Psest_0361 at 388.007 kb on + strand, within Psest_0361 at 388.007 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.165 kb on + strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.166 kb on - strand, within Psest_0361 at 388.181 kb on + strand, within Psest_0361 at 388.182 kb on - strand, within Psest_0361
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined media remove 385,442 - +0.1 385,470 + -0.4 385,470 + +0.8 385,471 - +0.7 385,471 - +1.0 385,471 - +0.1 385,471 - +0.7 385,497 + -0.3 385,506 + +0.1 385,520 + +0.5 385,521 - +0.3 386,190 + Psest_0359 0.84 +0.4 386,191 - Psest_0359 0.84 +0.0 386,191 - Psest_0359 0.84 -0.6 386,191 - Psest_0359 0.84 -0.8 386,191 - Psest_0359 0.84 +0.4 386,566 + Psest_0360 0.22 +0.4 386,676 + Psest_0360 0.34 +0.6 386,676 + Psest_0360 0.34 +0.4 386,676 + Psest_0360 0.34 +0.2 386,676 + Psest_0360 0.34 +1.1 386,677 - Psest_0360 0.34 +1.8 386,677 - Psest_0360 0.34 +0.9 386,677 - Psest_0360 0.34 +0.9 386,677 - Psest_0360 0.34 +0.4 386,677 - Psest_0360 0.34 +1.7 386,677 - Psest_0360 0.34 +0.3 387,005 - Psest_0360 0.70 +0.6 387,005 - Psest_0360 0.70 +0.9 387,005 - Psest_0360 0.70 +0.7 387,005 - Psest_0360 0.70 +1.8 387,005 - Psest_0360 0.70 +0.2 387,005 - Psest_0360 0.70 -0.3 387,005 - Psest_0360 0.70 +1.3 387,154 - Psest_0360 0.87 +1.4 387,154 - Psest_0360 0.87 +0.9 387,154 - Psest_0360 0.87 +1.1 387,284 - -0.6 387,333 - +0.1 387,383 + +2.1 387,383 + +1.1 387,392 - +0.2 387,392 - -2.5 387,392 - +0.3 387,424 - -0.4 387,432 - +1.1 387,432 - -1.2 387,505 + -0.3 387,505 + +0.6 387,538 - +0.8 387,539 + -0.5 387,539 + -1.7 387,539 + +0.2 387,539 + -1.0 387,539 + -2.1 387,539 + +0.7 387,539 + -0.1 387,539 + +0.7 387,539 + +1.2 387,539 + +0.2 387,539 + -0.7 387,539 + +0.2 387,539 + -0.2 387,539 + +0.2 387,539 + +1.5 387,539 + -0.5 387,540 - +0.5 387,540 - -0.3 387,540 - +0.7 387,540 - +0.8 387,540 - -0.0 387,540 - -0.4 387,540 - -0.1 387,540 - +1.2 387,540 - -0.1 387,540 - +0.3 387,540 - +0.3 387,540 - +0.7 387,540 - +0.0 387,540 - +1.2 387,540 - +0.4 387,575 + +0.3 387,575 + +0.8 387,596 - -0.1 387,596 - +0.6 387,664 - Psest_0361 0.13 +0.3 387,836 + Psest_0361 0.27 -0.0 387,905 + Psest_0361 0.32 +0.2 387,906 - Psest_0361 0.32 +0.1 387,998 + Psest_0361 0.39 +0.0 387,998 + Psest_0361 0.39 -0.2 387,999 - Psest_0361 0.39 +0.9 387,999 - Psest_0361 0.39 +0.1 387,999 - Psest_0361 0.39 +0.1 387,999 - Psest_0361 0.39 +0.0 388,007 + Psest_0361 0.40 +1.5 388,007 + Psest_0361 0.40 +1.4 388,165 + Psest_0361 0.52 -0.3 388,165 + Psest_0361 0.52 +0.8 388,165 + Psest_0361 0.52 -0.6 388,165 + Psest_0361 0.52 +0.6 388,165 + Psest_0361 0.52 -0.3 388,165 + Psest_0361 0.52 -0.3 388,166 - Psest_0361 0.52 +0.6 388,166 - Psest_0361 0.52 +0.5 388,166 - Psest_0361 0.52 +1.1 388,166 - Psest_0361 0.52 +1.4 388,166 - Psest_0361 0.52 +0.4 388,166 - Psest_0361 0.52 +0.6 388,166 - Psest_0361 0.52 +2.1 388,181 + Psest_0361 0.53 +0.7 388,182 - Psest_0361 0.54 +0.2
Or see this region's nucleotide sequence