Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3035

Experiment: RCH2 defined media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2 defined media
3,218,441	+				+0.8
3,218,499	+				-0.3
3,218,499	+				-2.3
3,218,499	+				-0.3
3,218,500	-				+0.2
3,218,645	+		Psest_3034	0.32	-0.2
3,218,645	+		Psest_3034	0.32	-0.0
3,218,646	-		Psest_3034	0.32	-0.1
3,218,646	-		Psest_3034	0.32	-1.2
3,218,646	-		Psest_3034	0.32	-0.1
3,218,646	-		Psest_3034	0.32	+1.5
3,218,646	-		Psest_3034	0.32	+1.1
3,218,646	-		Psest_3034	0.32	+1.5
3,218,646	-		Psest_3034	0.32	+0.2
3,218,646	-		Psest_3034	0.32	-0.4
3,218,715	+		Psest_3034	0.44	-0.4
3,218,716	-		Psest_3034	0.44	-0.2
3,218,723	+		Psest_3034	0.45	-0.9
3,218,724	-		Psest_3034	0.46	-0.7
3,218,725	+		Psest_3034	0.46	+0.0
3,218,725	+		Psest_3034	0.46	-0.5
3,218,725	+		Psest_3034	0.46	-1.1
3,218,725	+		Psest_3034	0.46	-0.7
3,218,726	-		Psest_3034	0.46	+0.8
3,218,726	-		Psest_3034	0.46	+1.1
3,218,726	-		Psest_3034	0.46	+0.2
3,218,726	-		Psest_3034	0.46	+0.1
3,218,726	-		Psest_3034	0.46	-0.1
3,218,726	-		Psest_3034	0.46	-0.2
3,218,772	-		Psest_3034	0.54	+0.1
3,218,772	-		Psest_3034	0.54	+0.3
3,218,774	+		Psest_3034	0.54	-0.0
3,218,774	+		Psest_3034	0.54	-0.1
3,218,775	-		Psest_3034	0.54	-0.8
3,218,775	-		Psest_3034	0.54	-0.3
3,218,775	-		Psest_3034	0.54	-0.3
3,218,775	-		Psest_3034	0.54	+0.1
3,218,775	-		Psest_3034	0.54	+1.5
3,218,895	+		Psest_3034	0.74	+0.1
3,218,896	-		Psest_3034	0.75	-1.8
3,218,896	-		Psest_3034	0.75	-2.4
3,218,918	-		Psest_3034	0.78	-0.7
3,219,024	+				+0.2
3,219,101	+				-0.3
3,219,102	-				-0.3
3,219,102	-				+0.6
3,219,102	-				+0.0
3,219,102	-				-0.3
3,219,102	-				-0.9
3,219,103	+				+1.3
3,219,113	+				-0.0
3,219,113	+				+0.5
3,219,113	+				+0.9
3,219,273	+		Psest_3035	0.14	-0.2
3,219,273	+		Psest_3035	0.14	-0.1
3,219,273	+		Psest_3035	0.14	+0.2
3,219,273	+		Psest_3035	0.14	+0.2
3,219,273	+		Psest_3035	0.14	+0.3
3,219,273	+		Psest_3035	0.14	+0.2
3,219,273	+		Psest_3035	0.14	-0.3
3,219,274	-		Psest_3035	0.15	-0.1
3,219,274	-		Psest_3035	0.15	-0.4
3,219,274	-		Psest_3035	0.15	-0.1
3,219,274	-		Psest_3035	0.15	-0.3
3,219,274	-		Psest_3035	0.15	+0.2
3,219,321	+		Psest_3035	0.23	+0.0
3,219,322	-		Psest_3035	0.23	+0.2
3,219,322	-		Psest_3035	0.23	-0.6
3,219,322	-		Psest_3035	0.23	+0.1
3,219,322	-		Psest_3035	0.23	-0.0
3,219,322	-		Psest_3035	0.23	-0.1
3,219,322	-		Psest_3035	0.23	-1.2
3,219,325	+		Psest_3035	0.23	+1.7
3,219,325	+		Psest_3035	0.23	+0.5
3,219,325	+		Psest_3035	0.23	+0.5
3,219,325	+		Psest_3035	0.23	-0.8
3,219,325	+		Psest_3035	0.23	+0.4
3,219,325	+		Psest_3035	0.23	-0.3
3,219,325	+		Psest_3035	0.23	+0.4
3,219,326	-		Psest_3035	0.23	-0.7
3,219,326	-		Psest_3035	0.23	-0.3
3,219,326	-		Psest_3035	0.23	-0.8
3,219,414	+		Psest_3035	0.38	+1.7
3,219,415	-		Psest_3035	0.38	-0.2
3,219,415	-		Psest_3035	0.38	+0.6
3,219,415	-		Psest_3035	0.38	-0.4
3,219,477	+		Psest_3035	0.48	+0.7
3,219,477	+		Psest_3035	0.48	+0.2
3,219,477	+		Psest_3035	0.48	-0.2
3,219,478	-		Psest_3035	0.49	+1.3
3,219,478	-		Psest_3035	0.49	-0.5
3,219,497	+		Psest_3035	0.52	+0.4
3,219,522	+		Psest_3035	0.56	+1.1
3,219,523	-		Psest_3035	0.56	+0.5
3,219,523	-		Psest_3035	0.56	+0.0
3,219,523	-		Psest_3035	0.56	-0.6
3,219,613	-		Psest_3035	0.71	-0.4
3,219,621	+		Psest_3035	0.72	+1.4
3,219,622	-		Psest_3035	0.73	+0.3
3,219,630	+		Psest_3035	0.74	+1.7
3,219,630	+		Psest_3035	0.74	+1.9
3,219,630	+		Psest_3035	0.74	+1.5
3,219,630	+		Psest_3035	0.74	+1.6
3,219,630	+		Psest_3035	0.74	+2.3
3,219,630	+		Psest_3035	0.74	+1.7
3,219,630	+		Psest_3035	0.74	+1.9
3,219,630	+		Psest_3035	0.74	+1.4
3,219,630	+		Psest_3035	0.74	+2.0
3,219,630	+		Psest_3035	0.74	+1.5
3,219,631	-		Psest_3035	0.74	-0.5
3,219,631	-		Psest_3035	0.74	-0.0
3,219,631	-		Psest_3035	0.74	-0.3
3,219,631	-		Psest_3035	0.74	-0.7
3,219,631	-		Psest_3035	0.74	-0.8
3,219,631	-		Psest_3035	0.74	-0.6
3,219,631	-		Psest_3035	0.74	-0.1
3,219,694	+		Psest_3035	0.85	+1.1
3,219,694	+		Psest_3035	0.85	+1.9
3,219,694	+		Psest_3035	0.85	+2.0
3,219,695	-		Psest_3035	0.85	+0.1
3,219,774	+				+1.3
3,219,774	+				+1.1
3,219,774	+				+1.0
3,219,774	+				+1.5
3,219,774	+				+1.6
3,219,774	+				+0.6
3,219,774	+				+1.4
3,219,774	+				+1.7
3,219,775	-				+0.7
3,219,775	-				-0.3
3,219,775	-				-0.5
3,219,775	-				-0.6
3,219,775	-				-0.2
3,219,775	-				-0.0
3,219,775	-				-1.0
3,219,775	-				-0.9
3,219,775	-				-0.6
3,219,775	-				-0.9
3,219,784	-				-0.4
3,219,787	+				+2.3
3,219,787	+				+0.6
3,219,788	-				-0.5
3,219,911	-				+0.4
3,219,986	+				-0.2
3,219,986	+				-1.5
3,219,986	+				-0.5
3,219,986	+				-1.4
3,219,986	+				-0.4
3,219,986	+				-1.5
3,219,986	+				-1.2
3,219,986	+				-0.1
3,219,986	+				-0.8
3,219,986	+				-0.1
3,219,987	-				+1.0
3,219,987	-				-0.3
3,219,987	-				-0.4
3,219,987	-				+1.4
3,219,987	-				+0.2
3,219,987	-				+0.1
3,219,987	-				+0.3
3,219,987	-				-0.2
3,219,989	+				-1.0
3,219,989	+				-0.6
3,219,989	+				-1.2
3,219,989	+				+0.3
3,219,990	-				+1.8
3,219,990	-				+0.8
3,220,060	+		Psest_3036	0.12	-0.7
3,220,060	+		Psest_3036	0.12	+0.0
3,220,060	+		Psest_3036	0.12	+0.0
3,220,060	+		Psest_3036	0.12	-0.1
3,220,060	+		Psest_3036	0.12	-1.1
3,220,061	-		Psest_3036	0.13	-0.6
3,220,061	-		Psest_3036	0.13	-0.3
3,220,061	-		Psest_3036	0.13	+0.8
3,220,061	-		Psest_3036	0.13	-0.2
3,220,123	+		Psest_3036	0.21	+0.2
3,220,123	+		Psest_3036	0.21	-0.5
3,220,123	+		Psest_3036	0.21	+0.6
3,220,123	+		Psest_3036	0.21	-0.2
3,220,124	-		Psest_3036	0.22	-0.7
3,220,124	-		Psest_3036	0.22	-0.1
3,220,124	-		Psest_3036	0.22	+0.5
3,220,124	-		Psest_3036	0.22	-0.2
3,220,201	+		Psest_3036	0.32	+0.2
3,220,201	+		Psest_3036	0.32	-0.5
3,220,202	-		Psest_3036	0.33	-0.0
3,220,202	-		Psest_3036	0.33	+1.6
3,220,202	-		Psest_3036	0.33	-0.6
3,220,202	-		Psest_3036	0.33	+0.8
3,220,202	-		Psest_3036	0.33	+0.3
3,220,217	+		Psest_3036	0.35	+0.0
3,220,217	+		Psest_3036	0.35	-1.0
3,220,217	+		Psest_3036	0.35	-0.8
3,220,217	+		Psest_3036	0.35	+0.1
3,220,218	-		Psest_3036	0.35	-0.2
3,220,218	-		Psest_3036	0.35	-0.5
3,220,218	-		Psest_3036	0.35	+0.4
3,220,218	-		Psest_3036	0.35	+0.7
3,220,309	+		Psest_3036	0.48	+1.6
3,220,309	+		Psest_3036	0.48	-0.0
3,220,310	-		Psest_3036	0.48	+1.0
3,220,310	-		Psest_3036	0.48	+0.6
3,220,310	-		Psest_3036	0.48	-0.6
3,220,310	-		Psest_3036	0.48	-0.5
3,220,310	-		Psest_3036	0.48	+0.6
3,220,310	-		Psest_3036	0.48	-0.1
3,220,310	-		Psest_3036	0.48	-0.0
3,220,310	-		Psest_3036	0.48	+0.4
3,220,310	-		Psest_3036	0.48	-0.8
3,220,310	-		Psest_3036	0.48	+0.8
3,220,399	+		Psest_3036	0.61	+0.1
3,220,409	-		Psest_3036	0.62	+0.0
3,220,515	+		Psest_3036	0.77	+0.4
3,220,516	-		Psest_3036	0.77	+0.1
3,220,516	-		Psest_3036	0.77	+0.8
3,220,516	-		Psest_3036	0.77	+0.0
3,220,561	+		Psest_3036	0.84	+0.9
3,220,561	+		Psest_3036	0.84	+0.1
3,220,562	-		Psest_3036	0.84	-0.3
3,220,591	+		Psest_3036	0.88	+0.8
3,220,592	-		Psest_3036	0.88	-0.2
3,220,592	-		Psest_3036	0.88	+0.7
3,220,592	-		Psest_3036	0.88	-0.4
3,220,592	-		Psest_3036	0.88	+0.1
3,220,710	-				+1.0