Experiment: RCH2 defined media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2739 and Psest_2740 are separated by 117 nucleotides Psest_2740 and Psest_2741 are separated by 120 nucleotides
Psest_2739: Psest_2739 - Transcriptional regulator, at 2,929,582 to 2,930,483
_2739
Psest_2740: Psest_2740 - Acyl carrier protein phosphodiesterase, at 2,930,601 to 2,931,323
_2740
Psest_2741: Psest_2741 - catalase/peroxidase HPI, at 2,931,444 to 2,933,675
_2741
Position (kb)
2930
2931
2932 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2929.675 kb on + strand, within Psest_2739 at 2929.675 kb on + strand, within Psest_2739 at 2929.675 kb on + strand, within Psest_2739 at 2929.675 kb on + strand, within Psest_2739 at 2929.675 kb on + strand, within Psest_2739 at 2929.675 kb on + strand, within Psest_2739 at 2929.675 kb on + strand, within Psest_2739 at 2929.675 kb on + strand, within Psest_2739 at 2929.675 kb on + strand, within Psest_2739 at 2929.675 kb on + strand, within Psest_2739 at 2929.675 kb on + strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2929.676 kb on - strand, within Psest_2739 at 2930.180 kb on + strand, within Psest_2739 at 2930.180 kb on + strand, within Psest_2739 at 2930.181 kb on - strand, within Psest_2739 at 2930.181 kb on - strand, within Psest_2739 at 2930.181 kb on - strand, within Psest_2739 at 2930.186 kb on + strand, within Psest_2739 at 2930.504 kb on + strand at 2930.504 kb on + strand at 2930.504 kb on + strand at 2930.505 kb on - strand at 2930.534 kb on + strand at 2930.548 kb on - strand at 2930.749 kb on + strand, within Psest_2740 at 2930.887 kb on + strand, within Psest_2740 at 2930.887 kb on + strand, within Psest_2740 at 2930.887 kb on + strand, within Psest_2740 at 2930.887 kb on + strand, within Psest_2740 at 2930.887 kb on + strand, within Psest_2740 at 2930.887 kb on + strand, within Psest_2740 at 2930.887 kb on + strand, within Psest_2740 at 2930.888 kb on - strand, within Psest_2740 at 2930.888 kb on - strand, within Psest_2740 at 2930.888 kb on - strand, within Psest_2740 at 2930.888 kb on - strand, within Psest_2740 at 2930.888 kb on - strand, within Psest_2740 at 2930.910 kb on + strand, within Psest_2740 at 2931.009 kb on + strand, within Psest_2740 at 2931.010 kb on - strand, within Psest_2740 at 2931.049 kb on + strand, within Psest_2740 at 2931.049 kb on + strand, within Psest_2740 at 2931.049 kb on + strand, within Psest_2740 at 2931.050 kb on - strand, within Psest_2740 at 2931.050 kb on - strand, within Psest_2740 at 2931.203 kb on - strand, within Psest_2740 at 2931.203 kb on - strand, within Psest_2740 at 2931.238 kb on + strand, within Psest_2740 at 2931.238 kb on + strand, within Psest_2740 at 2931.239 kb on - strand, within Psest_2740 at 2931.239 kb on - strand, within Psest_2740 at 2931.340 kb on + strand at 2931.350 kb on - strand at 2931.350 kb on - strand at 2931.571 kb on + strand at 2931.571 kb on + strand at 2931.571 kb on + strand at 2931.572 kb on - strand at 2931.572 kb on - strand at 2931.573 kb on + strand at 2931.573 kb on + strand at 2931.573 kb on + strand at 2931.573 kb on + strand at 2931.573 kb on + strand at 2931.573 kb on + strand at 2931.573 kb on + strand at 2931.573 kb on + strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.574 kb on - strand at 2931.621 kb on + strand at 2931.621 kb on + strand at 2931.622 kb on - strand at 2931.622 kb on - strand at 2931.852 kb on + strand, within Psest_2741 at 2931.852 kb on + strand, within Psest_2741 at 2931.852 kb on + strand, within Psest_2741 at 2931.852 kb on + strand, within Psest_2741 at 2931.853 kb on - strand, within Psest_2741 at 2931.910 kb on + strand, within Psest_2741 at 2931.911 kb on - strand, within Psest_2741 at 2931.913 kb on + strand, within Psest_2741 at 2931.913 kb on + strand, within Psest_2741 at 2931.913 kb on + strand, within Psest_2741 at 2931.913 kb on + strand, within Psest_2741 at 2931.913 kb on + strand, within Psest_2741 at 2931.913 kb on + strand, within Psest_2741 at 2931.913 kb on + strand, within Psest_2741 at 2931.914 kb on - strand, within Psest_2741 at 2931.914 kb on - strand, within Psest_2741 at 2932.252 kb on + strand, within Psest_2741
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined media remove 2,929,675 + Psest_2739 0.10 -0.4 2,929,675 + Psest_2739 0.10 -1.2 2,929,675 + Psest_2739 0.10 -0.0 2,929,675 + Psest_2739 0.10 -0.3 2,929,675 + Psest_2739 0.10 -0.7 2,929,675 + Psest_2739 0.10 -0.6 2,929,675 + Psest_2739 0.10 -0.1 2,929,675 + Psest_2739 0.10 +1.0 2,929,675 + Psest_2739 0.10 +1.3 2,929,675 + Psest_2739 0.10 -0.9 2,929,675 + Psest_2739 0.10 +0.2 2,929,676 - Psest_2739 0.10 +0.9 2,929,676 - Psest_2739 0.10 +0.2 2,929,676 - Psest_2739 0.10 +1.4 2,929,676 - Psest_2739 0.10 +1.2 2,929,676 - Psest_2739 0.10 +1.5 2,929,676 - Psest_2739 0.10 +0.8 2,929,676 - Psest_2739 0.10 +0.9 2,929,676 - Psest_2739 0.10 +1.6 2,929,676 - Psest_2739 0.10 +0.6 2,929,676 - Psest_2739 0.10 +1.4 2,929,676 - Psest_2739 0.10 +0.3 2,929,676 - Psest_2739 0.10 +2.4 2,929,676 - Psest_2739 0.10 +2.1 2,930,180 + Psest_2739 0.66 -1.4 2,930,180 + Psest_2739 0.66 +0.1 2,930,181 - Psest_2739 0.66 +0.2 2,930,181 - Psest_2739 0.66 +0.1 2,930,181 - Psest_2739 0.66 +0.7 2,930,186 + Psest_2739 0.67 +0.8 2,930,504 + -2.1 2,930,504 + +0.8 2,930,504 + +0.6 2,930,505 - +0.0 2,930,534 + +1.5 2,930,548 - +0.3 2,930,749 + Psest_2740 0.20 +1.4 2,930,887 + Psest_2740 0.40 -0.6 2,930,887 + Psest_2740 0.40 -0.4 2,930,887 + Psest_2740 0.40 +0.4 2,930,887 + Psest_2740 0.40 +0.7 2,930,887 + Psest_2740 0.40 +0.4 2,930,887 + Psest_2740 0.40 -0.0 2,930,887 + Psest_2740 0.40 +0.4 2,930,888 - Psest_2740 0.40 +0.4 2,930,888 - Psest_2740 0.40 +0.2 2,930,888 - Psest_2740 0.40 +0.0 2,930,888 - Psest_2740 0.40 +0.2 2,930,888 - Psest_2740 0.40 +2.2 2,930,910 + Psest_2740 0.43 +0.7 2,931,009 + Psest_2740 0.56 +0.5 2,931,010 - Psest_2740 0.57 +0.6 2,931,049 + Psest_2740 0.62 +0.9 2,931,049 + Psest_2740 0.62 +1.2 2,931,049 + Psest_2740 0.62 +0.5 2,931,050 - Psest_2740 0.62 +0.2 2,931,050 - Psest_2740 0.62 -0.1 2,931,203 - Psest_2740 0.83 +0.7 2,931,203 - Psest_2740 0.83 +0.4 2,931,238 + Psest_2740 0.88 +0.6 2,931,238 + Psest_2740 0.88 +1.1 2,931,239 - Psest_2740 0.88 -0.3 2,931,239 - Psest_2740 0.88 +1.4 2,931,340 + +0.5 2,931,350 - -1.2 2,931,350 - -1.3 2,931,571 + +0.6 2,931,571 + +1.0 2,931,571 + +0.4 2,931,572 - +1.1 2,931,572 - +3.3 2,931,573 + +0.3 2,931,573 + +1.1 2,931,573 + +0.4 2,931,573 + -0.3 2,931,573 + +0.6 2,931,573 + -0.6 2,931,573 + -0.1 2,931,573 + -0.0 2,931,574 - +1.0 2,931,574 - +1.4 2,931,574 - +0.9 2,931,574 - +1.2 2,931,574 - +1.9 2,931,574 - +1.1 2,931,574 - +1.5 2,931,574 - +2.3 2,931,574 - +2.6 2,931,574 - +1.0 2,931,574 - +1.2 2,931,574 - +1.7 2,931,574 - +1.9 2,931,621 + +0.8 2,931,621 + +0.3 2,931,622 - +1.4 2,931,622 - +1.6 2,931,852 + Psest_2741 0.18 -0.9 2,931,852 + Psest_2741 0.18 +1.0 2,931,852 + Psest_2741 0.18 +0.2 2,931,852 + Psest_2741 0.18 +0.2 2,931,853 - Psest_2741 0.18 +1.4 2,931,910 + Psest_2741 0.21 +0.5 2,931,911 - Psest_2741 0.21 +1.2 2,931,913 + Psest_2741 0.21 -0.9 2,931,913 + Psest_2741 0.21 -0.6 2,931,913 + Psest_2741 0.21 +1.0 2,931,913 + Psest_2741 0.21 +0.6 2,931,913 + Psest_2741 0.21 -0.3 2,931,913 + Psest_2741 0.21 -0.9 2,931,913 + Psest_2741 0.21 -0.7 2,931,914 - Psest_2741 0.21 -0.1 2,931,914 - Psest_2741 0.21 -0.2 2,932,252 + Psest_2741 0.36 +0.3
Or see this region's nucleotide sequence