Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1600

Experiment: RCH2 defined media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1599 and Psest_1600 are separated by 8 nucleotidesPsest_1600 and Psest_1601 are separated by 81 nucleotides Psest_1599: Psest_1599 - heavy metal sensor kinase, at 1,702,596 to 1,703,960 _1599 Psest_1600: Psest_1600 - hypothetical protein, at 1,703,969 to 1,704,421 _1600 Psest_1601: Psest_1601 - Signal transduction histidine kinase, at 1,704,503 to 1,705,825 _1601 Position (kb) 1703 1704 1705Strain fitness (log2 ratio) -1 0 1 2at 1703.406 kb on + strand, within Psest_1599at 1703.407 kb on - strand, within Psest_1599at 1703.552 kb on - strand, within Psest_1599at 1703.559 kb on + strand, within Psest_1599at 1703.559 kb on + strand, within Psest_1599at 1703.559 kb on + strand, within Psest_1599at 1703.560 kb on - strand, within Psest_1599at 1703.560 kb on - strand, within Psest_1599at 1703.560 kb on - strand, within Psest_1599at 1703.563 kb on - strand, within Psest_1599at 1703.563 kb on - strand, within Psest_1599at 1703.563 kb on - strand, within Psest_1599at 1703.846 kb on + strandat 1703.879 kb on + strandat 1704.352 kb on + strand, within Psest_1600at 1704.353 kb on - strand, within Psest_1600at 1704.445 kb on + strandat 1704.446 kb on - strandat 1704.446 kb on - strandat 1704.634 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined media
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1,703,406 + Psest_1599 0.59 +0.5
1,703,407 - Psest_1599 0.59 +0.3
1,703,552 - Psest_1599 0.70 -0.2
1,703,559 + Psest_1599 0.71 +0.0
1,703,559 + Psest_1599 0.71 +1.0
1,703,559 + Psest_1599 0.71 +0.4
1,703,560 - Psest_1599 0.71 +0.5
1,703,560 - Psest_1599 0.71 -0.4
1,703,560 - Psest_1599 0.71 -0.4
1,703,563 - Psest_1599 0.71 +0.2
1,703,563 - Psest_1599 0.71 +1.8
1,703,563 - Psest_1599 0.71 -0.1
1,703,846 + -0.3
1,703,879 + +1.2
1,704,352 + Psest_1600 0.85 +0.6
1,704,353 - Psest_1600 0.85 +1.7
1,704,445 + +1.8
1,704,446 - -1.1
1,704,446 - +0.3
1,704,634 + +0.2

Or see this region's nucleotide sequence