Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0567

Experiment: Def Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0566 and Psest_0567 are separated by 158 nucleotidesPsest_0567 and Psest_0568 are separated by 319 nucleotidesPsest_0568 and Psest_0569 are separated by 21 nucleotides Psest_0566: Psest_0566 - urea ABC transporter, permease component (from data), at 621,692 to 623,263 _0566 Psest_0567: Psest_0567 - urea ABC transporter, urea binding protein, at 623,422 to 624,690 _0567 Psest_0568: Psest_0568 - pseudouridine synthase, at 625,010 to 625,639 _0568 Psest_0569: Psest_0569 - Protein of unknown function (DUF2788)., at 625,661 to 625,879 _0569 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2 3at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.443 kb on + strand, within Psest_0566at 622.444 kb on - strand, within Psest_0566at 622.444 kb on - strand, within Psest_0566at 622.452 kb on + strand, within Psest_0566at 622.453 kb on - strand, within Psest_0566at 622.453 kb on - strand, within Psest_0566at 623.028 kb on + strand, within Psest_0566at 623.028 kb on + strand, within Psest_0566at 623.240 kb on + strandat 623.240 kb on + strandat 623.240 kb on + strandat 623.241 kb on - strandat 623.241 kb on - strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.423 kb on + strandat 623.424 kb on - strandat 623.424 kb on - strandat 623.424 kb on - strandat 623.470 kb on - strandat 623.471 kb on + strandat 623.471 kb on + strandat 623.471 kb on + strandat 623.472 kb on - strandat 623.472 kb on - strandat 623.472 kb on - strandat 623.472 kb on - strandat 623.604 kb on - strand, within Psest_0567at 623.647 kb on + strand, within Psest_0567at 623.647 kb on + strand, within Psest_0567at 623.648 kb on - strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.711 kb on + strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.712 kb on - strand, within Psest_0567at 623.834 kb on + strand, within Psest_0567at 623.834 kb on + strand, within Psest_0567at 623.834 kb on + strand, within Psest_0567at 623.835 kb on - strand, within Psest_0567at 623.835 kb on - strand, within Psest_0567at 623.835 kb on - strand, within Psest_0567at 623.835 kb on - strand, within Psest_0567at 623.960 kb on + strand, within Psest_0567at 623.961 kb on - strand, within Psest_0567at 624.077 kb on + strand, within Psest_0567at 624.077 kb on + strand, within Psest_0567at 624.077 kb on + strand, within Psest_0567at 624.078 kb on - strand, within Psest_0567at 624.078 kb on - strand, within Psest_0567at 624.156 kb on - strand, within Psest_0567at 624.161 kb on + strand, within Psest_0567at 624.161 kb on + strand, within Psest_0567at 624.161 kb on + strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.162 kb on - strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.263 kb on + strand, within Psest_0567at 624.264 kb on - strand, within Psest_0567at 624.264 kb on - strand, within Psest_0567at 624.296 kb on + strand, within Psest_0567at 624.297 kb on - strand, within Psest_0567at 624.308 kb on + strand, within Psest_0567at 624.335 kb on + strand, within Psest_0567at 624.335 kb on + strand, within Psest_0567at 624.335 kb on + strand, within Psest_0567at 624.336 kb on - strand, within Psest_0567at 624.336 kb on - strand, within Psest_0567at 624.336 kb on - strand, within Psest_0567at 624.935 kb on + strandat 624.936 kb on - strandat 624.936 kb on - strandat 624.936 kb on - strandat 624.936 kb on - strandat 624.981 kb on - strandat 625.058 kb on - strandat 625.307 kb on + strand, within Psest_0568at 625.308 kb on - strand, within Psest_0568at 625.308 kb on - strand, within Psest_0568at 625.308 kb on - strand, within Psest_0568at 625.308 kb on - strand, within Psest_0568at 625.428 kb on + strand, within Psest_0568at 625.429 kb on - strand, within Psest_0568at 625.638 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.0001 mg/ml
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622,443 + Psest_0566 0.48 -0.2
622,443 + Psest_0566 0.48 +0.6
622,443 + Psest_0566 0.48 +1.9
622,443 + Psest_0566 0.48 -0.4
622,443 + Psest_0566 0.48 +0.4
622,443 + Psest_0566 0.48 +0.3
622,443 + Psest_0566 0.48 +0.9
622,443 + Psest_0566 0.48 +0.5
622,443 + Psest_0566 0.48 +0.6
622,443 + Psest_0566 0.48 +0.8
622,443 + Psest_0566 0.48 +2.2
622,443 + Psest_0566 0.48 +0.4
622,444 - Psest_0566 0.48 -0.1
622,444 - Psest_0566 0.48 +0.4
622,452 + Psest_0566 0.48 +0.8
622,453 - Psest_0566 0.48 +0.5
622,453 - Psest_0566 0.48 +0.6
623,028 + Psest_0566 0.85 +1.0
623,028 + Psest_0566 0.85 -0.8
623,240 + +1.0
623,240 + -0.1
623,240 + +0.9
623,241 - -0.4
623,241 - +0.3
623,423 + -0.0
623,423 + +0.5
623,423 + -0.4
623,423 + +0.1
623,423 + +0.5
623,423 + +0.1
623,423 + -0.5
623,423 + +0.5
623,424 - +1.1
623,424 - +2.3
623,424 - +0.3
623,470 - +1.1
623,471 + +0.2
623,471 + -0.7
623,471 + +0.8
623,472 - +1.4
623,472 - +1.2
623,472 - +1.4
623,472 - +0.1
623,604 - Psest_0567 0.14 +1.6
623,647 + Psest_0567 0.18 +1.4
623,647 + Psest_0567 0.18 -0.4
623,648 - Psest_0567 0.18 +1.0
623,711 + Psest_0567 0.23 -0.4
623,711 + Psest_0567 0.23 -0.1
623,711 + Psest_0567 0.23 +0.6
623,711 + Psest_0567 0.23 +0.6
623,711 + Psest_0567 0.23 +0.1
623,711 + Psest_0567 0.23 +3.7
623,711 + Psest_0567 0.23 -0.5
623,711 + Psest_0567 0.23 +1.0
623,712 - Psest_0567 0.23 -0.7
623,712 - Psest_0567 0.23 +1.0
623,712 - Psest_0567 0.23 +2.2
623,712 - Psest_0567 0.23 +0.3
623,712 - Psest_0567 0.23 +0.3
623,712 - Psest_0567 0.23 +0.9
623,712 - Psest_0567 0.23 +1.9
623,712 - Psest_0567 0.23 +1.5
623,712 - Psest_0567 0.23 +0.9
623,712 - Psest_0567 0.23 +0.6
623,834 + Psest_0567 0.32 +0.4
623,834 + Psest_0567 0.32 +0.5
623,834 + Psest_0567 0.32 -0.1
623,835 - Psest_0567 0.33 -0.3
623,835 - Psest_0567 0.33 +0.5
623,835 - Psest_0567 0.33 -2.6
623,835 - Psest_0567 0.33 -0.4
623,960 + Psest_0567 0.42 +1.4
623,961 - Psest_0567 0.42 +0.6
624,077 + Psest_0567 0.52 +1.3
624,077 + Psest_0567 0.52 +0.6
624,077 + Psest_0567 0.52 +0.4
624,078 - Psest_0567 0.52 -0.4
624,078 - Psest_0567 0.52 +0.1
624,156 - Psest_0567 0.58 -0.2
624,161 + Psest_0567 0.58 +0.9
624,161 + Psest_0567 0.58 +1.4
624,161 + Psest_0567 0.58 +1.1
624,162 - Psest_0567 0.58 -0.2
624,162 - Psest_0567 0.58 +0.6
624,162 - Psest_0567 0.58 -0.5
624,162 - Psest_0567 0.58 -0.7
624,162 - Psest_0567 0.58 -1.7
624,263 + Psest_0567 0.66 -0.2
624,263 + Psest_0567 0.66 -0.0
624,263 + Psest_0567 0.66 +0.4
624,263 + Psest_0567 0.66 -0.7
624,264 - Psest_0567 0.66 +1.1
624,264 - Psest_0567 0.66 +0.1
624,296 + Psest_0567 0.69 +1.6
624,297 - Psest_0567 0.69 +0.2
624,308 + Psest_0567 0.70 +0.1
624,335 + Psest_0567 0.72 -0.1
624,335 + Psest_0567 0.72 -0.3
624,335 + Psest_0567 0.72 +0.3
624,336 - Psest_0567 0.72 +1.7
624,336 - Psest_0567 0.72 +0.8
624,336 - Psest_0567 0.72 +0.4
624,935 + -0.2
624,936 - -1.2
624,936 - +0.8
624,936 - +0.5
624,936 - +0.1
624,981 - -0.5
625,058 - -1.6
625,307 + Psest_0568 0.47 +1.1
625,308 - Psest_0568 0.47 -0.8
625,308 - Psest_0568 0.47 +2.1
625,308 - Psest_0568 0.47 -0.7
625,308 - Psest_0568 0.47 -0.2
625,428 + Psest_0568 0.66 +1.2
625,429 - Psest_0568 0.67 +1.3
625,638 - +0.2

Or see this region's nucleotide sequence