Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3724

Experiment: Def Polymyxin B sulfate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3722 and Psest_3723 are separated by 20 nucleotidesPsest_3723 and Psest_3724 are separated by 196 nucleotidesPsest_3724 and Psest_3725 are separated by 112 nucleotides Psest_3722: Psest_3722 - Micrococcal nuclease (thermonuclease) homologs, at 3,891,887 to 3,892,684 _3722 Psest_3723: Psest_3723 - ribosomal protein L31, at 3,892,705 to 3,892,917 _3723 Psest_3724: Psest_3724 - primosomal protein N', at 3,893,114 to 3,895,336 _3724 Psest_3725: Psest_3725 - arginyl-tRNA synthetase, at 3,895,449 to 3,897,188 _3725 Position (kb) 3893 3894 3895 3896Strain fitness (log2 ratio) -1 0 1at 3892.332 kb on + strand, within Psest_3722at 3892.332 kb on + strand, within Psest_3722at 3892.333 kb on - strand, within Psest_3722at 3892.489 kb on + strand, within Psest_3722at 3892.489 kb on + strand, within Psest_3722at 3892.665 kb on - strandat 3892.707 kb on - strandat 3892.707 kb on - strandat 3892.707 kb on - strandat 3892.707 kb on - strandat 3892.707 kb on - strandat 3893.047 kb on + strandat 3893.047 kb on + strandat 3893.047 kb on + strandat 3893.047 kb on + strandat 3893.047 kb on + strandat 3893.048 kb on - strandat 3893.048 kb on - strandat 3893.048 kb on - strandat 3893.048 kb on - strandat 3893.048 kb on - strandat 3893.048 kb on - strandat 3893.048 kb on - strandat 3893.048 kb on - strandat 3893.048 kb on - strandat 3893.053 kb on + strandat 3893.053 kb on + strandat 3893.053 kb on + strandat 3893.053 kb on + strandat 3893.054 kb on - strandat 3893.054 kb on - strandat 3893.072 kb on + strandat 3893.072 kb on + strandat 3893.082 kb on + strandat 3893.082 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.0001 mg/ml
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3,892,332 + Psest_3722 0.56 +0.7
3,892,332 + Psest_3722 0.56 +1.1
3,892,333 - Psest_3722 0.56 +0.9
3,892,489 + Psest_3722 0.75 -0.4
3,892,489 + Psest_3722 0.75 +0.5
3,892,665 - +0.5
3,892,707 - +0.8
3,892,707 - +1.4
3,892,707 - +1.5
3,892,707 - +0.0
3,892,707 - +0.3
3,893,047 + -1.7
3,893,047 + -1.7
3,893,047 + +0.7
3,893,047 + -0.4
3,893,047 + -0.4
3,893,048 - -0.0
3,893,048 - +0.0
3,893,048 - -0.8
3,893,048 - +0.6
3,893,048 - +0.3
3,893,048 - +0.2
3,893,048 - -0.1
3,893,048 - +0.2
3,893,048 - -1.3
3,893,053 + -1.3
3,893,053 + -0.6
3,893,053 + -0.6
3,893,053 + -0.5
3,893,054 - +0.9
3,893,054 - +0.8
3,893,072 + -0.9
3,893,072 + +0.1
3,893,082 + +0.7
3,893,082 + -1.5

Or see this region's nucleotide sequence