Experiment: Def Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3569 and Psest_3570 overlap by 4 nucleotides Psest_3570 and Psest_3571 are separated by 183 nucleotides Psest_3571 and Psest_3572 are separated by 71 nucleotides
Psest_3569: Psest_3569 - Biopolymer transport proteins, at 3,743,165 to 3,744,511
_3569
Psest_3570: Psest_3570 - Protein of unknown function (DUF3450)., at 3,744,508 to 3,745,293
_3570
Psest_3571: Psest_3571 - Outer membrane protein W, at 3,745,477 to 3,746,154
_3571
Psest_3572: Psest_3572 - Nucleoside-diphosphate-sugar epimerases, at 3,746,226 to 3,747,149
_3572
Position (kb)
3744
3745
3746 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3745.603 kb on - strand, within Psest_3571 at 3745.603 kb on - strand, within Psest_3571 at 3745.612 kb on - strand, within Psest_3571 at 3745.612 kb on - strand, within Psest_3571 at 3745.693 kb on + strand, within Psest_3571 at 3745.693 kb on + strand, within Psest_3571 at 3745.693 kb on + strand, within Psest_3571 at 3745.724 kb on + strand, within Psest_3571 at 3745.725 kb on - strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.834 kb on + strand, within Psest_3571 at 3745.835 kb on - strand, within Psest_3571 at 3745.835 kb on - strand, within Psest_3571 at 3745.835 kb on - strand, within Psest_3571 at 3745.835 kb on - strand, within Psest_3571 at 3745.835 kb on - strand, within Psest_3571 at 3745.849 kb on - strand, within Psest_3571 at 3745.888 kb on - strand, within Psest_3571 at 3745.891 kb on + strand, within Psest_3571 at 3745.891 kb on + strand, within Psest_3571 at 3745.891 kb on + strand, within Psest_3571 at 3745.892 kb on - strand, within Psest_3571 at 3745.892 kb on - strand, within Psest_3571 at 3745.892 kb on - strand, within Psest_3571 at 3745.988 kb on + strand, within Psest_3571 at 3745.989 kb on - strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3745.999 kb on + strand, within Psest_3571 at 3746.000 kb on - strand, within Psest_3571 at 3746.000 kb on - strand, within Psest_3571 at 3746.041 kb on + strand, within Psest_3571 at 3746.041 kb on + strand, within Psest_3571 at 3746.041 kb on + strand, within Psest_3571 at 3746.041 kb on + strand, within Psest_3571 at 3746.041 kb on + strand, within Psest_3571 at 3746.042 kb on - strand, within Psest_3571 at 3746.112 kb on - strand at 3746.125 kb on + strand at 3746.125 kb on + strand at 3746.125 kb on + strand at 3746.126 kb on - strand at 3746.126 kb on - strand at 3746.196 kb on + strand at 3746.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.0001 mg/ml remove 3,745,603 - Psest_3571 0.19 -0.2 3,745,603 - Psest_3571 0.19 +0.8 3,745,612 - Psest_3571 0.20 -1.6 3,745,612 - Psest_3571 0.20 -0.3 3,745,693 + Psest_3571 0.32 +1.4 3,745,693 + Psest_3571 0.32 +0.2 3,745,693 + Psest_3571 0.32 +0.1 3,745,724 + Psest_3571 0.36 +0.1 3,745,725 - Psest_3571 0.37 -0.4 3,745,834 + Psest_3571 0.53 -0.3 3,745,834 + Psest_3571 0.53 +1.3 3,745,834 + Psest_3571 0.53 +1.3 3,745,834 + Psest_3571 0.53 +2.4 3,745,834 + Psest_3571 0.53 +1.1 3,745,834 + Psest_3571 0.53 +1.5 3,745,834 + Psest_3571 0.53 +1.1 3,745,834 + Psest_3571 0.53 +0.8 3,745,835 - Psest_3571 0.53 -0.3 3,745,835 - Psest_3571 0.53 -1.4 3,745,835 - Psest_3571 0.53 +0.2 3,745,835 - Psest_3571 0.53 -0.7 3,745,835 - Psest_3571 0.53 +0.7 3,745,849 - Psest_3571 0.55 -0.1 3,745,888 - Psest_3571 0.61 +1.3 3,745,891 + Psest_3571 0.61 +1.6 3,745,891 + Psest_3571 0.61 +0.7 3,745,891 + Psest_3571 0.61 +1.7 3,745,892 - Psest_3571 0.61 -0.0 3,745,892 - Psest_3571 0.61 +0.9 3,745,892 - Psest_3571 0.61 -1.0 3,745,988 + Psest_3571 0.75 +2.3 3,745,989 - Psest_3571 0.76 +0.2 3,745,999 + Psest_3571 0.77 +2.0 3,745,999 + Psest_3571 0.77 -0.9 3,745,999 + Psest_3571 0.77 +2.8 3,745,999 + Psest_3571 0.77 +1.5 3,745,999 + Psest_3571 0.77 +1.1 3,745,999 + Psest_3571 0.77 +1.7 3,746,000 - Psest_3571 0.77 -0.2 3,746,000 - Psest_3571 0.77 -0.3 3,746,041 + Psest_3571 0.83 +0.8 3,746,041 + Psest_3571 0.83 +1.4 3,746,041 + Psest_3571 0.83 +1.8 3,746,041 + Psest_3571 0.83 +0.9 3,746,041 + Psest_3571 0.83 +1.9 3,746,042 - Psest_3571 0.83 +0.5 3,746,112 - +2.4 3,746,125 + +1.1 3,746,125 + +2.5 3,746,125 + +1.2 3,746,126 - +1.4 3,746,126 - +0.8 3,746,196 + -0.0 3,746,248 - +0.4
Or see this region's nucleotide sequence