Experiment: Def Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3293 and Psest_3294 are separated by 11 nucleotides Psest_3294 and Psest_3295 are separated by 185 nucleotides
Psest_3293: Psest_3293 - sulfate adenylyltransferase, large subunit, at 3,459,051 to 3,460,949
_3293
Psest_3294: Psest_3294 - sulfate adenylyltransferase, small subunit, at 3,460,961 to 3,461,878
_3294
Psest_3295: Psest_3295 - dinuclear metal center protein, YbgI/SA1388 family, at 3,462,064 to 3,462,822
_3295
Position (kb)
3460
3461
3462 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3460.963 kb on - strand at 3460.963 kb on - strand at 3460.963 kb on - strand at 3460.963 kb on - strand at 3461.936 kb on - strand at 3461.936 kb on - strand at 3461.946 kb on + strand at 3461.947 kb on - strand at 3461.947 kb on - strand at 3461.954 kb on - strand at 3461.976 kb on - strand at 3461.990 kb on + strand at 3462.023 kb on + strand at 3462.023 kb on + strand at 3462.023 kb on + strand at 3462.023 kb on + strand at 3462.024 kb on - strand at 3462.024 kb on - strand at 3462.024 kb on - strand at 3462.039 kb on + strand at 3462.075 kb on + strand at 3462.122 kb on + strand at 3462.122 kb on + strand at 3462.224 kb on - strand, within Psest_3295 at 3462.276 kb on - strand, within Psest_3295 at 3462.305 kb on - strand, within Psest_3295 at 3462.353 kb on - strand, within Psest_3295 at 3462.495 kb on + strand, within Psest_3295 at 3462.637 kb on + strand, within Psest_3295 at 3462.637 kb on + strand, within Psest_3295 at 3462.713 kb on - strand, within Psest_3295 at 3462.752 kb on + strand at 3462.752 kb on + strand at 3462.752 kb on + strand at 3462.808 kb on - strand at 3462.828 kb on + strand at 3462.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.0001 mg/ml remove 3,460,963 - -1.7 3,460,963 - -1.3 3,460,963 - +0.4 3,460,963 - -0.5 3,461,936 - +0.2 3,461,936 - +0.0 3,461,946 + -0.9 3,461,947 - -0.1 3,461,947 - -0.3 3,461,954 - +0.7 3,461,976 - -0.6 3,461,990 + -2.0 3,462,023 + -0.3 3,462,023 + -1.5 3,462,023 + -0.6 3,462,023 + -0.8 3,462,024 - +0.4 3,462,024 - +0.9 3,462,024 - -0.3 3,462,039 + +1.0 3,462,075 + +0.7 3,462,122 + -0.3 3,462,122 + +1.1 3,462,224 - Psest_3295 0.21 -0.0 3,462,276 - Psest_3295 0.28 +1.4 3,462,305 - Psest_3295 0.32 +0.7 3,462,353 - Psest_3295 0.38 +0.4 3,462,495 + Psest_3295 0.57 +0.4 3,462,637 + Psest_3295 0.75 -0.3 3,462,637 + Psest_3295 0.75 +0.1 3,462,713 - Psest_3295 0.86 +0.1 3,462,752 + -0.6 3,462,752 + -0.3 3,462,752 + -1.1 3,462,808 - +0.4 3,462,828 + -0.9 3,462,829 - +2.5
Or see this region's nucleotide sequence