Experiment: Def Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1686 and Psest_1687 are separated by 63 nucleotides Psest_1687 and Psest_1688 are separated by 14 nucleotides Psest_1688 and Psest_1689 are separated by 192 nucleotides
Psest_1686: Psest_1686 - fatty acid/phospholipid synthesis protein PlsX, at 1,794,280 to 1,795,320
_1686
Psest_1687: Psest_1687 - malonyl CoA-acyl carrier protein transacylase, at 1,795,384 to 1,796,322
_1687
Psest_1688: Psest_1688 - 3-oxoacyl-(acyl-carrier-protein) reductase, at 1,796,337 to 1,797,080
_1688
Psest_1689: Psest_1689 - acyl carrier protein, at 1,797,273 to 1,797,509
_1689
Position (kb)
1795
1796
1797 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1794.663 kb on + strand, within Psest_1686 at 1794.719 kb on + strand, within Psest_1686 at 1794.720 kb on - strand, within Psest_1686 at 1794.720 kb on - strand, within Psest_1686 at 1794.851 kb on + strand, within Psest_1686 at 1794.953 kb on + strand, within Psest_1686 at 1794.953 kb on + strand, within Psest_1686 at 1794.953 kb on + strand, within Psest_1686 at 1794.953 kb on + strand, within Psest_1686 at 1794.953 kb on + strand, within Psest_1686 at 1794.954 kb on - strand, within Psest_1686 at 1794.954 kb on - strand, within Psest_1686 at 1794.954 kb on - strand, within Psest_1686 at 1795.099 kb on + strand, within Psest_1686 at 1795.099 kb on + strand, within Psest_1686 at 1795.249 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.069 kb on + strand at 1797.126 kb on + strand at 1797.126 kb on + strand at 1797.130 kb on + strand at 1797.130 kb on + strand at 1797.130 kb on + strand at 1797.130 kb on + strand at 1797.132 kb on + strand at 1797.132 kb on + strand at 1797.217 kb on + strand at 1797.217 kb on + strand at 1797.217 kb on + strand at 1797.217 kb on + strand at 1797.217 kb on + strand at 1797.219 kb on + strand at 1797.219 kb on + strand at 1797.219 kb on + strand at 1797.219 kb on + strand at 1797.219 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.0001 mg/ml remove 1,794,663 + Psest_1686 0.37 -2.1 1,794,719 + Psest_1686 0.42 -0.8 1,794,720 - Psest_1686 0.42 -3.5 1,794,720 - Psest_1686 0.42 -0.7 1,794,851 + Psest_1686 0.55 -0.7 1,794,953 + Psest_1686 0.65 -1.0 1,794,953 + Psest_1686 0.65 +0.5 1,794,953 + Psest_1686 0.65 -2.0 1,794,953 + Psest_1686 0.65 -0.4 1,794,953 + Psest_1686 0.65 -1.5 1,794,954 - Psest_1686 0.65 -0.6 1,794,954 - Psest_1686 0.65 -1.8 1,794,954 - Psest_1686 0.65 -1.4 1,795,099 + Psest_1686 0.79 +0.8 1,795,099 + Psest_1686 0.79 +0.4 1,795,249 + +1.7 1,797,069 + +1.3 1,797,069 + -0.8 1,797,069 + +1.1 1,797,069 + +1.2 1,797,069 + +0.1 1,797,069 + +2.1 1,797,069 + +0.4 1,797,069 + +0.5 1,797,069 + +1.4 1,797,069 + -0.2 1,797,069 + +0.7 1,797,069 + +0.7 1,797,069 + +2.2 1,797,126 + +1.1 1,797,126 + +1.4 1,797,130 + +1.1 1,797,130 + +0.0 1,797,130 + +1.4 1,797,130 + +0.9 1,797,132 + +0.5 1,797,132 + +1.3 1,797,217 + -1.4 1,797,217 + +0.9 1,797,217 + +0.7 1,797,217 + +2.2 1,797,217 + +0.2 1,797,219 + +0.4 1,797,219 + +1.0 1,797,219 + +0.5 1,797,219 + +1.6 1,797,219 + +0.7
Or see this region's nucleotide sequence