Experiment: Def Polymyxin B sulfate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1186 and Psest_1187 are separated by 82 nucleotides Psest_1187 and Psest_1188 are separated by 146 nucleotides
Psest_1186: Psest_1186 - heavy metal sensor kinase, at 1,287,944 to 1,289,302
_1186
Psest_1187: Psest_1187 - exodeoxyribonuclease III, at 1,289,385 to 1,290,176
_1187
Psest_1188: Psest_1188 - FOG: EAL domain, at 1,290,323 to 1,291,573
_1188
Position (kb)
1289
1290
1291 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1288.407 kb on + strand, within Psest_1186 at 1288.408 kb on - strand, within Psest_1186 at 1288.408 kb on - strand, within Psest_1186 at 1288.776 kb on - strand, within Psest_1186 at 1289.144 kb on + strand, within Psest_1186 at 1289.248 kb on + strand at 1289.311 kb on - strand at 1289.351 kb on + strand at 1289.351 kb on + strand at 1289.351 kb on + strand at 1289.351 kb on + strand at 1289.352 kb on - strand at 1289.352 kb on - strand at 1289.352 kb on - strand at 1289.359 kb on + strand at 1289.359 kb on + strand at 1289.359 kb on + strand at 1289.360 kb on - strand at 1289.360 kb on - strand at 1289.709 kb on + strand, within Psest_1187 at 1289.710 kb on - strand, within Psest_1187 at 1289.710 kb on - strand, within Psest_1187 at 1289.752 kb on - strand, within Psest_1187 at 1289.835 kb on + strand, within Psest_1187 at 1289.836 kb on - strand, within Psest_1187 at 1289.836 kb on - strand, within Psest_1187 at 1289.865 kb on + strand, within Psest_1187 at 1289.865 kb on + strand, within Psest_1187 at 1289.865 kb on + strand, within Psest_1187 at 1289.865 kb on + strand, within Psest_1187 at 1289.865 kb on + strand, within Psest_1187 at 1289.865 kb on + strand, within Psest_1187 at 1289.865 kb on + strand, within Psest_1187 at 1289.865 kb on + strand, within Psest_1187 at 1289.866 kb on - strand, within Psest_1187 at 1289.866 kb on - strand, within Psest_1187 at 1289.866 kb on - strand, within Psest_1187 at 1289.866 kb on - strand, within Psest_1187 at 1289.866 kb on - strand, within Psest_1187 at 1289.866 kb on - strand, within Psest_1187 at 1289.866 kb on - strand, within Psest_1187 at 1289.922 kb on + strand, within Psest_1187 at 1289.922 kb on + strand, within Psest_1187 at 1289.988 kb on + strand, within Psest_1187 at 1289.988 kb on + strand, within Psest_1187 at 1289.988 kb on + strand, within Psest_1187 at 1289.988 kb on + strand, within Psest_1187 at 1289.988 kb on + strand, within Psest_1187 at 1289.988 kb on + strand, within Psest_1187 at 1289.988 kb on + strand, within Psest_1187 at 1289.988 kb on + strand, within Psest_1187 at 1289.989 kb on - strand, within Psest_1187 at 1289.989 kb on - strand, within Psest_1187 at 1289.989 kb on - strand, within Psest_1187 at 1289.989 kb on - strand, within Psest_1187 at 1289.989 kb on - strand, within Psest_1187 at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.264 kb on + strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.265 kb on - strand at 1290.268 kb on + strand at 1290.268 kb on + strand at 1290.268 kb on + strand at 1290.268 kb on + strand at 1290.268 kb on + strand at 1290.268 kb on + strand at 1290.269 kb on - strand at 1290.269 kb on - strand at 1290.269 kb on - strand at 1290.269 kb on - strand at 1290.269 kb on - strand at 1290.283 kb on + strand at 1290.284 kb on - strand at 1290.353 kb on - strand at 1290.578 kb on + strand, within Psest_1188 at 1290.578 kb on + strand, within Psest_1188 at 1290.578 kb on + strand, within Psest_1188 at 1290.579 kb on - strand, within Psest_1188 at 1290.914 kb on + strand, within Psest_1188 at 1291.102 kb on + strand, within Psest_1188 at 1291.106 kb on + strand, within Psest_1188 at 1291.106 kb on + strand, within Psest_1188 at 1291.106 kb on + strand, within Psest_1188 at 1291.106 kb on + strand, within Psest_1188 at 1291.106 kb on + strand, within Psest_1188 at 1291.106 kb on + strand, within Psest_1188 at 1291.107 kb on - strand, within Psest_1188 at 1291.107 kb on - strand, within Psest_1188 at 1291.107 kb on - strand, within Psest_1188 at 1291.107 kb on - strand, within Psest_1188 at 1291.107 kb on - strand, within Psest_1188
Per-strain Table
Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.0001 mg/ml remove 1,288,407 + Psest_1186 0.34 +1.7 1,288,408 - Psest_1186 0.34 -0.6 1,288,408 - Psest_1186 0.34 +1.2 1,288,776 - Psest_1186 0.61 +0.1 1,289,144 + Psest_1186 0.88 +1.4 1,289,248 + +1.1 1,289,311 - -0.8 1,289,351 + +0.4 1,289,351 + +1.7 1,289,351 + +1.8 1,289,351 + +0.6 1,289,352 - -0.1 1,289,352 - +0.6 1,289,352 - +0.1 1,289,359 + +1.5 1,289,359 + +0.6 1,289,359 + +2.2 1,289,360 - -0.6 1,289,360 - +0.3 1,289,709 + Psest_1187 0.41 +0.7 1,289,710 - Psest_1187 0.41 +0.1 1,289,710 - Psest_1187 0.41 +0.2 1,289,752 - Psest_1187 0.46 -0.2 1,289,835 + Psest_1187 0.57 +1.0 1,289,836 - Psest_1187 0.57 -0.0 1,289,836 - Psest_1187 0.57 -1.5 1,289,865 + Psest_1187 0.61 +2.2 1,289,865 + Psest_1187 0.61 +1.6 1,289,865 + Psest_1187 0.61 +1.2 1,289,865 + Psest_1187 0.61 +1.7 1,289,865 + Psest_1187 0.61 +1.1 1,289,865 + Psest_1187 0.61 +2.2 1,289,865 + Psest_1187 0.61 +1.9 1,289,865 + Psest_1187 0.61 +1.3 1,289,866 - Psest_1187 0.61 +0.4 1,289,866 - Psest_1187 0.61 -1.9 1,289,866 - Psest_1187 0.61 +1.3 1,289,866 - Psest_1187 0.61 +0.3 1,289,866 - Psest_1187 0.61 +2.2 1,289,866 - Psest_1187 0.61 -0.7 1,289,866 - Psest_1187 0.61 -0.6 1,289,922 + Psest_1187 0.68 +1.8 1,289,922 + Psest_1187 0.68 +2.2 1,289,988 + Psest_1187 0.76 +1.9 1,289,988 + Psest_1187 0.76 +2.2 1,289,988 + Psest_1187 0.76 +2.3 1,289,988 + Psest_1187 0.76 +3.1 1,289,988 + Psest_1187 0.76 +2.2 1,289,988 + Psest_1187 0.76 +2.4 1,289,988 + Psest_1187 0.76 -3.1 1,289,988 + Psest_1187 0.76 +1.0 1,289,989 - Psest_1187 0.76 +0.1 1,289,989 - Psest_1187 0.76 +0.2 1,289,989 - Psest_1187 0.76 +0.2 1,289,989 - Psest_1187 0.76 +0.7 1,289,989 - Psest_1187 0.76 -0.8 1,290,264 + +2.0 1,290,264 + +0.9 1,290,264 + +1.6 1,290,264 + +1.2 1,290,264 + +2.2 1,290,264 + +2.0 1,290,264 + +1.8 1,290,264 + +2.3 1,290,264 + +1.2 1,290,264 + +2.5 1,290,264 + +2.1 1,290,264 + +1.4 1,290,264 + +2.5 1,290,264 + +2.4 1,290,264 + +1.8 1,290,265 - -0.0 1,290,265 - -0.8 1,290,265 - -1.0 1,290,265 - -0.6 1,290,265 - +0.3 1,290,265 - +0.8 1,290,265 - -0.3 1,290,265 - +0.2 1,290,265 - +0.6 1,290,265 - +0.1 1,290,265 - +1.4 1,290,265 - -1.7 1,290,268 + +2.8 1,290,268 + +1.8 1,290,268 + +1.7 1,290,268 + +2.1 1,290,268 + +2.4 1,290,268 + +2.3 1,290,269 - +0.5 1,290,269 - +0.0 1,290,269 - -0.5 1,290,269 - +0.2 1,290,269 - -0.9 1,290,283 + +0.6 1,290,284 - -1.2 1,290,353 - -0.2 1,290,578 + Psest_1188 0.20 -1.0 1,290,578 + Psest_1188 0.20 +0.8 1,290,578 + Psest_1188 0.20 -0.6 1,290,579 - Psest_1188 0.20 +1.2 1,290,914 + Psest_1188 0.47 +1.3 1,291,102 + Psest_1188 0.62 -1.3 1,291,106 + Psest_1188 0.63 -0.1 1,291,106 + Psest_1188 0.63 -0.6 1,291,106 + Psest_1188 0.63 +0.3 1,291,106 + Psest_1188 0.63 -0.6 1,291,106 + Psest_1188 0.63 +1.0 1,291,106 + Psest_1188 0.63 +0.0 1,291,107 - Psest_1188 0.63 -0.1 1,291,107 - Psest_1188 0.63 +0.2 1,291,107 - Psest_1188 0.63 -0.3 1,291,107 - Psest_1188 0.63 -1.1 1,291,107 - Psest_1188 0.63 -0.8
Or see this region's nucleotide sequence