Experiment: Def Polymyxin B sulfate 0.00008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0621 and Psest_0622 overlap by 4 nucleotides Psest_0622 and Psest_0623 are separated by 185 nucleotides Psest_0623 and Psest_0624 are separated by 25 nucleotides
Psest_0621: Psest_0621 - Protein-disulfide isomerase, at 672,889 to 673,569
_0621
Psest_0622: Psest_0622 - Disulfide bond formation protein DsbB, at 673,566 to 674,000
_0622
Psest_0623: Psest_0623 - Arsenite efflux pump ACR3 and related permeases, at 674,186 to 675,169
_0623
Psest_0624: Psest_0624 - hypothetical protein, at 675,195 to 675,557
_0624
Position (kb) 674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.246 kb on + strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.247 kb on - strand, within Psest_0621 at 673.250 kb on + strand, within Psest_0621 at 673.250 kb on + strand, within Psest_0621 at 673.251 kb on - strand, within Psest_0621 at 673.251 kb on - strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.304 kb on + strand, within Psest_0621 at 673.305 kb on - strand, within Psest_0621 at 673.305 kb on - strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.496 kb on + strand, within Psest_0621 at 673.497 kb on - strand, within Psest_0621 at 673.497 kb on - strand, within Psest_0621 at 673.593 kb on + strand at 673.593 kb on + strand at 673.593 kb on + strand at 673.594 kb on - strand at 673.594 kb on - strand at 673.594 kb on - strand at 673.594 kb on - strand at 673.616 kb on + strand, within Psest_0622 at 673.617 kb on - strand, within Psest_0622 at 673.735 kb on + strand, within Psest_0622 at 673.736 kb on - strand, within Psest_0622 at 673.736 kb on - strand, within Psest_0622 at 673.736 kb on - strand, within Psest_0622 at 673.792 kb on + strand, within Psest_0622 at 673.793 kb on - strand, within Psest_0622 at 673.956 kb on + strand, within Psest_0622 at 673.957 kb on - strand at 674.053 kb on + strand at 674.053 kb on + strand at 674.053 kb on + strand at 674.054 kb on - strand at 674.095 kb on - strand at 674.155 kb on + strand at 674.241 kb on + strand at 674.242 kb on - strand at 674.249 kb on + strand at 674.249 kb on + strand at 674.249 kb on + strand at 674.250 kb on - strand at 674.250 kb on - strand at 674.250 kb on - strand at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.351 kb on + strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.352 kb on - strand, within Psest_0623 at 674.442 kb on + strand, within Psest_0623 at 674.443 kb on - strand, within Psest_0623 at 674.443 kb on - strand, within Psest_0623 at 674.536 kb on + strand, within Psest_0623 at 674.536 kb on + strand, within Psest_0623 at 674.536 kb on + strand, within Psest_0623 at 674.537 kb on - strand, within Psest_0623 at 674.543 kb on + strand, within Psest_0623 at 674.543 kb on + strand, within Psest_0623 at 674.543 kb on + strand, within Psest_0623 at 674.544 kb on - strand, within Psest_0623 at 674.642 kb on + strand, within Psest_0623 at 674.642 kb on + strand, within Psest_0623 at 674.643 kb on - strand, within Psest_0623 at 674.838 kb on + strand, within Psest_0623 at 674.910 kb on + strand, within Psest_0623 at 674.926 kb on - strand, within Psest_0623 at 674.928 kb on + strand, within Psest_0623 at 675.005 kb on - strand, within Psest_0623 at 675.030 kb on + strand, within Psest_0623 at 675.030 kb on + strand, within Psest_0623 at 675.030 kb on + strand, within Psest_0623 at 675.031 kb on - strand, within Psest_0623 at 675.031 kb on - strand, within Psest_0623 at 675.031 kb on - strand, within Psest_0623 at 675.095 kb on - strand at 675.109 kb on - strand at 675.109 kb on - strand at 675.131 kb on + strand at 675.131 kb on + strand at 675.131 kb on + strand at 675.132 kb on - strand at 675.132 kb on - strand at 675.132 kb on - strand at 675.132 kb on - strand at 675.135 kb on + strand at 675.135 kb on + strand at 675.136 kb on - strand at 675.288 kb on + strand, within Psest_0624 at 675.288 kb on + strand, within Psest_0624 at 675.289 kb on - strand, within Psest_0624 at 675.289 kb on - strand, within Psest_0624 at 675.311 kb on + strand, within Psest_0624 at 675.311 kb on + strand, within Psest_0624 at 675.311 kb on + strand, within Psest_0624 at 675.311 kb on + strand, within Psest_0624 at 675.312 kb on - strand, within Psest_0624 at 675.312 kb on - strand, within Psest_0624 at 675.312 kb on - strand, within Psest_0624 at 675.312 kb on - strand, within Psest_0624 at 675.335 kb on + strand, within Psest_0624 at 675.335 kb on + strand, within Psest_0624 at 675.335 kb on + strand, within Psest_0624 at 675.336 kb on - strand, within Psest_0624 at 675.354 kb on + strand, within Psest_0624 at 675.354 kb on + strand, within Psest_0624 at 675.354 kb on + strand, within Psest_0624 at 675.354 kb on + strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.355 kb on - strand, within Psest_0624 at 675.384 kb on + strand, within Psest_0624 at 675.524 kb on + strand at 675.525 kb on - strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.575 kb on + strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.576 kb on - strand at 675.583 kb on + strand at 675.583 kb on + strand at 675.583 kb on + strand at 675.584 kb on - strand at 675.659 kb on + strand at 675.705 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.730 kb on + strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.731 kb on - strand at 675.734 kb on + strand at 675.767 kb on + strand at 675.825 kb on + strand at 675.825 kb on + strand at 675.825 kb on + strand at 675.858 kb on + strand at 675.921 kb on - strand at 675.929 kb on + strand at 675.929 kb on + strand at 675.929 kb on + strand at 675.951 kb on - strand at 675.953 kb on - strand at 676.040 kb on + strand at 676.040 kb on + strand at 676.041 kb on - strand at 676.041 kb on - strand at 676.058 kb on + strand at 676.064 kb on + strand at 676.065 kb on - strand at 676.097 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.00008 mg/ml remove 673,246 + Psest_0621 0.52 -0.3 673,246 + Psest_0621 0.52 +1.6 673,246 + Psest_0621 0.52 -0.5 673,246 + Psest_0621 0.52 -0.6 673,246 + Psest_0621 0.52 -0.3 673,246 + Psest_0621 0.52 -0.3 673,246 + Psest_0621 0.52 -0.3 673,246 + Psest_0621 0.52 -0.1 673,246 + Psest_0621 0.52 -1.8 673,246 + Psest_0621 0.52 -0.3 673,246 + Psest_0621 0.52 -2.6 673,246 + Psest_0621 0.52 -0.6 673,247 - Psest_0621 0.53 -0.5 673,247 - Psest_0621 0.53 -0.1 673,247 - Psest_0621 0.53 -0.5 673,247 - Psest_0621 0.53 +0.3 673,247 - Psest_0621 0.53 +0.5 673,247 - Psest_0621 0.53 +0.3 673,247 - Psest_0621 0.53 +0.5 673,247 - Psest_0621 0.53 -0.5 673,247 - Psest_0621 0.53 +0.4 673,247 - Psest_0621 0.53 -0.3 673,247 - Psest_0621 0.53 +0.0 673,247 - Psest_0621 0.53 +0.2 673,247 - Psest_0621 0.53 +1.1 673,247 - Psest_0621 0.53 -1.3 673,247 - Psest_0621 0.53 -0.6 673,247 - Psest_0621 0.53 -0.2 673,247 - Psest_0621 0.53 -0.8 673,247 - Psest_0621 0.53 -0.3 673,247 - Psest_0621 0.53 -0.2 673,247 - Psest_0621 0.53 -0.4 673,247 - Psest_0621 0.53 +0.1 673,247 - Psest_0621 0.53 -0.8 673,247 - Psest_0621 0.53 -0.2 673,247 - Psest_0621 0.53 -0.3 673,247 - Psest_0621 0.53 -0.3 673,247 - Psest_0621 0.53 -0.2 673,247 - Psest_0621 0.53 -0.1 673,247 - Psest_0621 0.53 +0.3 673,247 - Psest_0621 0.53 -0.5 673,247 - Psest_0621 0.53 -0.3 673,247 - Psest_0621 0.53 +0.4 673,247 - Psest_0621 0.53 -0.7 673,247 - Psest_0621 0.53 +1.2 673,247 - Psest_0621 0.53 -1.2 673,250 + Psest_0621 0.53 -0.9 673,250 + Psest_0621 0.53 -1.3 673,251 - Psest_0621 0.53 -0.4 673,251 - Psest_0621 0.53 -1.5 673,304 + Psest_0621 0.61 -0.7 673,304 + Psest_0621 0.61 -0.5 673,304 + Psest_0621 0.61 +0.2 673,304 + Psest_0621 0.61 -0.5 673,305 - Psest_0621 0.61 -0.1 673,305 - Psest_0621 0.61 -0.8 673,496 + Psest_0621 0.89 -1.6 673,496 + Psest_0621 0.89 -0.2 673,496 + Psest_0621 0.89 -0.4 673,496 + Psest_0621 0.89 -1.3 673,496 + Psest_0621 0.89 +0.4 673,497 - Psest_0621 0.89 -1.5 673,497 - Psest_0621 0.89 -0.8 673,593 + +0.6 673,593 + -1.5 673,593 + +0.3 673,594 - -0.5 673,594 - +0.9 673,594 - -1.2 673,594 - -0.3 673,616 + Psest_0622 0.11 +0.2 673,617 - Psest_0622 0.12 -0.0 673,735 + Psest_0622 0.39 +0.1 673,736 - Psest_0622 0.39 +0.6 673,736 - Psest_0622 0.39 +0.3 673,736 - Psest_0622 0.39 +0.4 673,792 + Psest_0622 0.52 -0.2 673,793 - Psest_0622 0.52 +0.4 673,956 + Psest_0622 0.90 -0.5 673,957 - -0.4 674,053 + +0.0 674,053 + -0.7 674,053 + -0.1 674,054 - -1.2 674,095 - -0.3 674,155 + +0.3 674,241 + -0.3 674,242 - -0.4 674,249 + -0.7 674,249 + -0.3 674,249 + -0.2 674,250 - -0.1 674,250 - -0.1 674,250 - -1.0 674,351 + Psest_0623 0.17 -1.6 674,351 + Psest_0623 0.17 -0.7 674,351 + Psest_0623 0.17 -0.3 674,351 + Psest_0623 0.17 +0.9 674,351 + Psest_0623 0.17 -1.1 674,351 + Psest_0623 0.17 -1.7 674,351 + Psest_0623 0.17 +0.5 674,351 + Psest_0623 0.17 +0.3 674,351 + Psest_0623 0.17 -0.2 674,351 + Psest_0623 0.17 -0.6 674,351 + Psest_0623 0.17 -3.3 674,351 + Psest_0623 0.17 -0.2 674,351 + Psest_0623 0.17 -1.3 674,351 + Psest_0623 0.17 -0.5 674,351 + Psest_0623 0.17 +0.5 674,351 + Psest_0623 0.17 -0.7 674,351 + Psest_0623 0.17 +0.0 674,351 + Psest_0623 0.17 -0.5 674,351 + Psest_0623 0.17 -0.0 674,352 - Psest_0623 0.17 -0.0 674,352 - Psest_0623 0.17 -1.1 674,352 - Psest_0623 0.17 -0.8 674,352 - Psest_0623 0.17 -1.4 674,352 - Psest_0623 0.17 -0.9 674,352 - Psest_0623 0.17 -1.4 674,352 - Psest_0623 0.17 +0.3 674,352 - Psest_0623 0.17 +1.2 674,352 - Psest_0623 0.17 -0.7 674,352 - Psest_0623 0.17 +0.0 674,352 - Psest_0623 0.17 +0.7 674,352 - Psest_0623 0.17 -0.7 674,352 - Psest_0623 0.17 -0.5 674,352 - Psest_0623 0.17 -0.7 674,352 - Psest_0623 0.17 +0.5 674,352 - Psest_0623 0.17 -0.2 674,442 + Psest_0623 0.26 -1.5 674,443 - Psest_0623 0.26 -2.2 674,443 - Psest_0623 0.26 -1.0 674,536 + Psest_0623 0.36 -0.9 674,536 + Psest_0623 0.36 -0.5 674,536 + Psest_0623 0.36 -1.4 674,537 - Psest_0623 0.36 -1.5 674,543 + Psest_0623 0.36 -0.7 674,543 + Psest_0623 0.36 -2.1 674,543 + Psest_0623 0.36 +0.3 674,544 - Psest_0623 0.36 +0.4 674,642 + Psest_0623 0.46 -0.2 674,642 + Psest_0623 0.46 -0.3 674,643 - Psest_0623 0.46 -1.5 674,838 + Psest_0623 0.66 +0.3 674,910 + Psest_0623 0.74 -1.6 674,926 - Psest_0623 0.75 -0.7 674,928 + Psest_0623 0.75 +1.0 675,005 - Psest_0623 0.83 -0.2 675,030 + Psest_0623 0.86 -0.7 675,030 + Psest_0623 0.86 -0.6 675,030 + Psest_0623 0.86 -1.2 675,031 - Psest_0623 0.86 -1.7 675,031 - Psest_0623 0.86 -0.8 675,031 - Psest_0623 0.86 -0.8 675,095 - +1.1 675,109 - -1.1 675,109 - -1.0 675,131 + +0.7 675,131 + -0.7 675,131 + -0.4 675,132 - +0.4 675,132 - -1.0 675,132 - -3.3 675,132 - -1.4 675,135 + -0.7 675,135 + -0.9 675,136 - -1.1 675,288 + Psest_0624 0.26 -1.4 675,288 + Psest_0624 0.26 +0.3 675,289 - Psest_0624 0.26 -0.4 675,289 - Psest_0624 0.26 -0.6 675,311 + Psest_0624 0.32 -0.9 675,311 + Psest_0624 0.32 +0.1 675,311 + Psest_0624 0.32 +0.4 675,311 + Psest_0624 0.32 -0.1 675,312 - Psest_0624 0.32 +0.3 675,312 - Psest_0624 0.32 -0.6 675,312 - Psest_0624 0.32 -0.6 675,312 - Psest_0624 0.32 +0.1 675,335 + Psest_0624 0.39 -0.4 675,335 + Psest_0624 0.39 -1.6 675,335 + Psest_0624 0.39 -0.3 675,336 - Psest_0624 0.39 -1.2 675,354 + Psest_0624 0.44 -0.6 675,354 + Psest_0624 0.44 -0.7 675,354 + Psest_0624 0.44 -0.5 675,354 + Psest_0624 0.44 -1.3 675,355 - Psest_0624 0.44 -1.5 675,355 - Psest_0624 0.44 -0.1 675,355 - Psest_0624 0.44 -1.0 675,355 - Psest_0624 0.44 -0.5 675,355 - Psest_0624 0.44 +1.6 675,355 - Psest_0624 0.44 -0.9 675,384 + Psest_0624 0.52 -0.8 675,524 + -0.8 675,525 - -1.8 675,575 + -0.2 675,575 + -0.1 675,575 + -1.4 675,575 + -0.1 675,575 + -0.6 675,575 + +0.6 675,575 + -0.1 675,575 + +0.2 675,575 + -0.5 675,575 + -0.5 675,576 - -1.6 675,576 - -1.1 675,576 - -0.1 675,576 - -0.4 675,576 - -0.4 675,576 - -1.2 675,576 - +0.3 675,583 + -0.6 675,583 + -0.7 675,583 + -0.1 675,584 - -1.7 675,659 + -1.4 675,705 + -1.3 675,730 + -0.1 675,730 + -1.6 675,730 + -0.4 675,730 + -1.5 675,730 + -0.6 675,730 + -1.5 675,730 + -0.6 675,730 + -0.3 675,730 + -0.6 675,730 + -1.0 675,730 + -0.8 675,730 + -1.5 675,730 + -0.4 675,730 + -0.1 675,730 + +0.4 675,730 + -0.7 675,731 - -0.2 675,731 - -2.0 675,731 - -1.5 675,731 - -1.1 675,731 - -0.6 675,731 - -1.5 675,731 - -0.8 675,731 - -1.7 675,734 + -0.2 675,767 + -0.0 675,825 + -1.0 675,825 + -1.0 675,825 + -1.1 675,858 + -0.1 675,921 - -0.8 675,929 + +0.5 675,929 + -0.1 675,929 + -1.7 675,951 - -0.4 675,953 - -1.4 676,040 + -0.0 676,040 + +0.4 676,041 - -0.3 676,041 - -0.7 676,058 + -0.6 676,064 + +0.3 676,065 - -0.7 676,097 + +1.1
Or see this region's nucleotide sequence