Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0491

Experiment: Def Polymyxin B sulfate 0.00008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0490 and Psest_0491 are separated by 139 nucleotidesPsest_0491 and Psest_0492 are separated by 61 nucleotides Psest_0490: Psest_0490 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 542,287 to 543,360 _0490 Psest_0491: Psest_0491 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 543,500 to 545,566 _0491 Psest_0492: Psest_0492 - hypothetical protein, at 545,628 to 547,469 _0492 Position (kb) 543 544 545 546Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 542.531 kb on + strand, within Psest_0490at 542.665 kb on + strand, within Psest_0490at 542.665 kb on + strand, within Psest_0490at 542.665 kb on + strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.666 kb on - strand, within Psest_0490at 542.966 kb on + strand, within Psest_0490at 542.966 kb on + strand, within Psest_0490at 542.967 kb on - strand, within Psest_0490at 542.967 kb on - strand, within Psest_0490at 542.967 kb on - strand, within Psest_0490at 542.967 kb on - strand, within Psest_0490at 542.967 kb on - strand, within Psest_0490at 543.077 kb on + strand, within Psest_0490at 543.077 kb on + strand, within Psest_0490at 543.078 kb on - strand, within Psest_0490at 543.331 kb on + strandat 543.400 kb on + strandat 543.401 kb on - strandat 543.501 kb on + strandat 543.501 kb on + strandat 543.502 kb on - strandat 543.502 kb on - strandat 543.502 kb on - strandat 543.556 kb on - strandat 543.570 kb on + strandat 543.570 kb on + strandat 543.570 kb on + strandat 543.570 kb on + strandat 543.571 kb on - strandat 543.571 kb on - strandat 543.571 kb on - strandat 543.571 kb on - strandat 543.571 kb on - strandat 543.571 kb on - strandat 543.714 kb on + strand, within Psest_0491at 543.714 kb on + strand, within Psest_0491at 543.760 kb on + strand, within Psest_0491at 544.293 kb on + strand, within Psest_0491at 544.293 kb on + strand, within Psest_0491at 544.293 kb on + strand, within Psest_0491at 544.293 kb on + strand, within Psest_0491at 544.294 kb on - strand, within Psest_0491at 544.294 kb on - strand, within Psest_0491at 544.294 kb on - strand, within Psest_0491at 544.294 kb on - strand, within Psest_0491at 544.515 kb on - strand, within Psest_0491at 544.622 kb on + strand, within Psest_0491at 544.622 kb on + strand, within Psest_0491at 544.622 kb on + strand, within Psest_0491at 544.623 kb on - strand, within Psest_0491at 544.662 kb on + strand, within Psest_0491at 544.662 kb on + strand, within Psest_0491at 544.662 kb on + strand, within Psest_0491at 544.663 kb on - strand, within Psest_0491at 544.944 kb on + strand, within Psest_0491at 544.944 kb on + strand, within Psest_0491at 544.944 kb on + strand, within Psest_0491at 544.945 kb on - strand, within Psest_0491at 544.945 kb on - strand, within Psest_0491at 544.945 kb on - strand, within Psest_0491at 545.052 kb on + strand, within Psest_0491at 545.053 kb on - strand, within Psest_0491at 545.067 kb on + strand, within Psest_0491at 545.068 kb on - strand, within Psest_0491at 545.068 kb on - strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.071 kb on + strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.072 kb on - strand, within Psest_0491at 545.077 kb on + strand, within Psest_0491at 545.091 kb on + strand, within Psest_0491at 545.092 kb on - strand, within Psest_0491at 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.577 kb on + strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.578 kb on - strandat 545.629 kb on + strandat 545.629 kb on + strandat 545.630 kb on - strandat 545.630 kb on - strandat 545.630 kb on - strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.752 kb on + strandat 545.753 kb on - strandat 545.753 kb on - strandat 545.753 kb on - strandat 546.093 kb on + strand, within Psest_0492at 546.093 kb on + strand, within Psest_0492at 546.094 kb on - strand, within Psest_0492at 546.094 kb on - strand, within Psest_0492at 546.094 kb on - strand, within Psest_0492at 546.105 kb on + strand, within Psest_0492at 546.105 kb on + strand, within Psest_0492at 546.106 kb on - strand, within Psest_0492at 546.166 kb on + strand, within Psest_0492at 546.166 kb on + strand, within Psest_0492at 546.166 kb on + strand, within Psest_0492at 546.167 kb on - strand, within Psest_0492at 546.167 kb on - strand, within Psest_0492at 546.192 kb on - strand, within Psest_0492at 546.434 kb on - strand, within Psest_0492at 546.456 kb on - strand, within Psest_0492

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.00008 mg/ml
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542,531 + Psest_0490 0.23 +0.2
542,665 + Psest_0490 0.35 +0.3
542,665 + Psest_0490 0.35 +0.1
542,665 + Psest_0490 0.35 -0.2
542,666 - Psest_0490 0.35 +0.6
542,666 - Psest_0490 0.35 +0.3
542,666 - Psest_0490 0.35 +0.2
542,666 - Psest_0490 0.35 +0.6
542,666 - Psest_0490 0.35 +1.5
542,666 - Psest_0490 0.35 +1.3
542,966 + Psest_0490 0.63 +0.0
542,966 + Psest_0490 0.63 +0.0
542,967 - Psest_0490 0.63 -0.1
542,967 - Psest_0490 0.63 -0.6
542,967 - Psest_0490 0.63 +0.2
542,967 - Psest_0490 0.63 +0.4
542,967 - Psest_0490 0.63 +0.9
543,077 + Psest_0490 0.74 +0.6
543,077 + Psest_0490 0.74 +0.4
543,078 - Psest_0490 0.74 +0.6
543,331 + -1.0
543,400 + -0.8
543,401 - +0.1
543,501 + -0.6
543,501 + -0.3
543,502 - +0.8
543,502 - +0.5
543,502 - +0.8
543,556 - -0.2
543,570 + -1.6
543,570 + +0.9
543,570 + -1.1
543,570 + -2.4
543,571 - -0.2
543,571 - -1.8
543,571 - -1.7
543,571 - -1.0
543,571 - -2.2
543,571 - -1.0
543,714 + Psest_0491 0.10 -0.8
543,714 + Psest_0491 0.10 -0.9
543,760 + Psest_0491 0.13 -0.2
544,293 + Psest_0491 0.38 -1.9
544,293 + Psest_0491 0.38 -2.3
544,293 + Psest_0491 0.38 -1.3
544,293 + Psest_0491 0.38 -1.6
544,294 - Psest_0491 0.38 -2.0
544,294 - Psest_0491 0.38 -1.0
544,294 - Psest_0491 0.38 -1.8
544,294 - Psest_0491 0.38 -1.6
544,515 - Psest_0491 0.49 -0.6
544,622 + Psest_0491 0.54 -0.3
544,622 + Psest_0491 0.54 -1.1
544,622 + Psest_0491 0.54 -0.9
544,623 - Psest_0491 0.54 -2.3
544,662 + Psest_0491 0.56 +0.5
544,662 + Psest_0491 0.56 -2.4
544,662 + Psest_0491 0.56 -2.8
544,663 - Psest_0491 0.56 -2.7
544,944 + Psest_0491 0.70 -1.1
544,944 + Psest_0491 0.70 -0.5
544,944 + Psest_0491 0.70 -2.9
544,945 - Psest_0491 0.70 -1.2
544,945 - Psest_0491 0.70 -2.8
544,945 - Psest_0491 0.70 -3.0
545,052 + Psest_0491 0.75 -1.9
545,053 - Psest_0491 0.75 -1.1
545,067 + Psest_0491 0.76 -0.0
545,068 - Psest_0491 0.76 -1.8
545,068 - Psest_0491 0.76 -1.0
545,071 + Psest_0491 0.76 -1.0
545,071 + Psest_0491 0.76 -1.1
545,071 + Psest_0491 0.76 -2.4
545,071 + Psest_0491 0.76 -1.6
545,071 + Psest_0491 0.76 -2.0
545,071 + Psest_0491 0.76 -0.2
545,071 + Psest_0491 0.76 -2.0
545,071 + Psest_0491 0.76 -1.0
545,071 + Psest_0491 0.76 -0.8
545,071 + Psest_0491 0.76 -0.8
545,071 + Psest_0491 0.76 -1.8
545,071 + Psest_0491 0.76 -0.8
545,071 + Psest_0491 0.76 -1.7
545,071 + Psest_0491 0.76 -1.4
545,071 + Psest_0491 0.76 -1.9
545,071 + Psest_0491 0.76 -0.9
545,071 + Psest_0491 0.76 -2.0
545,071 + Psest_0491 0.76 -2.1
545,071 + Psest_0491 0.76 -2.1
545,072 - Psest_0491 0.76 -1.4
545,072 - Psest_0491 0.76 -2.9
545,072 - Psest_0491 0.76 -1.7
545,072 - Psest_0491 0.76 -3.7
545,072 - Psest_0491 0.76 -0.5
545,072 - Psest_0491 0.76 -1.6
545,072 - Psest_0491 0.76 -2.0
545,072 - Psest_0491 0.76 -0.9
545,072 - Psest_0491 0.76 -0.8
545,072 - Psest_0491 0.76 -2.2
545,072 - Psest_0491 0.76 -2.4
545,072 - Psest_0491 0.76 -2.4
545,077 + Psest_0491 0.76 +2.3
545,091 + Psest_0491 0.77 -2.5
545,092 - Psest_0491 0.77 -0.7
545,577 + -0.8
545,577 + -0.4
545,577 + -1.8
545,577 + -1.8
545,577 + -1.6
545,577 + -0.9
545,577 + -1.9
545,577 + -2.0
545,577 + -0.3
545,577 + -0.4
545,577 + -0.4
545,578 - +0.8
545,578 - -0.5
545,578 - -0.2
545,578 - -1.8
545,578 - +0.4
545,578 - -0.3
545,578 - -1.1
545,578 - -0.8
545,629 + -0.8
545,629 + +0.2
545,630 - -0.4
545,630 - -1.4
545,630 - -0.5
545,752 + +1.3
545,752 + +0.9
545,752 + +1.4
545,752 + +1.5
545,752 + +1.1
545,752 + +0.3
545,752 + +1.6
545,753 - -0.8
545,753 - -0.4
545,753 - -0.8
546,093 + Psest_0492 0.25 +0.3
546,093 + Psest_0492 0.25 +0.2
546,094 - Psest_0492 0.25 -0.1
546,094 - Psest_0492 0.25 -0.8
546,094 - Psest_0492 0.25 -1.2
546,105 + Psest_0492 0.26 -0.1
546,105 + Psest_0492 0.26 +0.4
546,106 - Psest_0492 0.26 +0.2
546,166 + Psest_0492 0.29 -0.1
546,166 + Psest_0492 0.29 +1.0
546,166 + Psest_0492 0.29 -0.2
546,167 - Psest_0492 0.29 -0.3
546,167 - Psest_0492 0.29 -0.4
546,192 - Psest_0492 0.31 +0.0
546,434 - Psest_0492 0.44 -0.2
546,456 - Psest_0492 0.45 -1.8

Or see this region's nucleotide sequence