Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3746

Experiment: Def Polymyxin B sulfate 0.00008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3745 and Psest_3746 overlap by 4 nucleotidesPsest_3746 and Psest_3747 are separated by 16 nucleotidesPsest_3747 and Psest_3748 overlap by 4 nucleotides Psest_3745: Psest_3745 - Uncharacterized enzyme of heme biosynthesis, at 3,915,683 to 3,916,903 _3745 Psest_3746: Psest_3746 - Uncharacterized enzyme of heme biosynthesis, at 3,916,900 to 3,918,078 _3746 Psest_3747: Psest_3747 - Uroporphyrinogen-III synthase, at 3,918,095 to 3,918,865 _3747 Psest_3748: Psest_3748 - porphobilinogen deaminase, at 3,918,862 to 3,919,800 _3748 Position (kb) 3916 3917 3918 3919Strain fitness (log2 ratio) -3 -2 -1 0 1at 3916.311 kb on + strand, within Psest_3745at 3916.311 kb on + strand, within Psest_3745at 3916.311 kb on + strand, within Psest_3745at 3916.312 kb on - strand, within Psest_3745at 3916.312 kb on - strand, within Psest_3745at 3916.330 kb on + strand, within Psest_3745at 3916.331 kb on - strand, within Psest_3745at 3916.331 kb on - strand, within Psest_3745at 3916.339 kb on - strand, within Psest_3745at 3916.395 kb on + strand, within Psest_3745at 3916.395 kb on + strand, within Psest_3745at 3916.395 kb on + strand, within Psest_3745at 3916.540 kb on - strand, within Psest_3745at 3916.806 kb on + strandat 3916.807 kb on - strandat 3916.807 kb on - strandat 3916.807 kb on - strandat 3916.821 kb on + strandat 3916.821 kb on + strandat 3916.821 kb on + strandat 3916.821 kb on + strandat 3916.822 kb on - strandat 3916.822 kb on - strandat 3916.822 kb on - strandat 3916.997 kb on + strandat 3916.997 kb on + strandat 3916.997 kb on + strandat 3917.048 kb on - strand, within Psest_3746at 3917.048 kb on - strand, within Psest_3746at 3917.160 kb on - strand, within Psest_3746at 3918.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.00008 mg/ml
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3,916,311 + Psest_3745 0.51 -0.2
3,916,311 + Psest_3745 0.51 +0.8
3,916,311 + Psest_3745 0.51 +0.7
3,916,312 - Psest_3745 0.52 +0.6
3,916,312 - Psest_3745 0.52 +0.2
3,916,330 + Psest_3745 0.53 -1.0
3,916,331 - Psest_3745 0.53 +0.0
3,916,331 - Psest_3745 0.53 +0.0
3,916,339 - Psest_3745 0.54 -1.0
3,916,395 + Psest_3745 0.58 +0.9
3,916,395 + Psest_3745 0.58 -0.9
3,916,395 + Psest_3745 0.58 -0.6
3,916,540 - Psest_3745 0.70 -0.3
3,916,806 + -0.0
3,916,807 - -0.1
3,916,807 - -1.0
3,916,807 - -0.8
3,916,821 + -3.0
3,916,821 + -1.9
3,916,821 + +1.0
3,916,821 + -0.8
3,916,822 - -0.2
3,916,822 - +0.0
3,916,822 - -1.2
3,916,997 + -0.3
3,916,997 + -0.5
3,916,997 + +0.7
3,917,048 - Psest_3746 0.13 -0.3
3,917,048 - Psest_3746 0.13 -0.8
3,917,160 - Psest_3746 0.22 +0.1
3,918,885 - +0.1

Or see this region's nucleotide sequence