Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3746
Experiment: Def Polymyxin B sulfate 0.00008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Def Polymyxin B sulfate 0.00008 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,916,311 | + | Psest_3745 | 0.51 | -0.2 | |
3,916,311 | + | Psest_3745 | 0.51 | +0.8 | |
3,916,311 | + | Psest_3745 | 0.51 | +0.7 | |
3,916,312 | - | Psest_3745 | 0.52 | +0.6 | |
3,916,312 | - | Psest_3745 | 0.52 | +0.2 | |
3,916,330 | + | Psest_3745 | 0.53 | -1.0 | |
3,916,331 | - | Psest_3745 | 0.53 | +0.0 | |
3,916,331 | - | Psest_3745 | 0.53 | +0.0 | |
3,916,339 | - | Psest_3745 | 0.54 | -1.0 | |
3,916,395 | + | Psest_3745 | 0.58 | +0.9 | |
3,916,395 | + | Psest_3745 | 0.58 | -0.9 | |
3,916,395 | + | Psest_3745 | 0.58 | -0.6 | |
3,916,540 | - | Psest_3745 | 0.70 | -0.3 | |
3,916,806 | + | -0.0 | |||
3,916,807 | - | -0.1 | |||
3,916,807 | - | -1.0 | |||
3,916,807 | - | -0.8 | |||
3,916,821 | + | -3.0 | |||
3,916,821 | + | -1.9 | |||
3,916,821 | + | +1.0 | |||
3,916,821 | + | -0.8 | |||
3,916,822 | - | -0.2 | |||
3,916,822 | - | +0.0 | |||
3,916,822 | - | -1.2 | |||
3,916,997 | + | -0.3 | |||
3,916,997 | + | -0.5 | |||
3,916,997 | + | +0.7 | |||
3,917,048 | - | Psest_3746 | 0.13 | -0.3 | |
3,917,048 | - | Psest_3746 | 0.13 | -0.8 | |
3,917,160 | - | Psest_3746 | 0.22 | +0.1 | |
3,918,885 | - | +0.1 |
Or see this region's nucleotide sequence