Experiment: Def Polymyxin B sulfate 0.00008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3320 and Psest_3321 are separated by 2 nucleotides Psest_3321 and Psest_3322 are separated by 40 nucleotides
Psest_3320: Psest_3320 - Predicted Zn-dependent proteases and their inactivated homologs, at 3,482,322 to 3,483,764
_3320
Psest_3321: Psest_3321 - Predicted amidohydrolase, at 3,483,767 to 3,484,612
_3321
Psest_3322: Psest_3322 - TIGR02099 family protein, at 3,484,653 to 3,488,456
_3322
Position (kb)
3483
3484
3485 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3482.774 kb on + strand, within Psest_3320 at 3482.775 kb on - strand, within Psest_3320 at 3482.775 kb on - strand, within Psest_3320 at 3482.775 kb on - strand, within Psest_3320 at 3482.776 kb on + strand, within Psest_3320 at 3482.776 kb on + strand, within Psest_3320 at 3482.776 kb on + strand, within Psest_3320 at 3482.776 kb on + strand, within Psest_3320 at 3482.776 kb on + strand, within Psest_3320 at 3482.776 kb on + strand, within Psest_3320 at 3482.776 kb on + strand, within Psest_3320 at 3482.777 kb on - strand, within Psest_3320 at 3482.777 kb on - strand, within Psest_3320 at 3482.777 kb on - strand, within Psest_3320 at 3482.777 kb on - strand, within Psest_3320 at 3483.124 kb on + strand, within Psest_3320 at 3483.124 kb on + strand, within Psest_3320 at 3483.125 kb on - strand, within Psest_3320 at 3483.125 kb on - strand, within Psest_3320 at 3483.400 kb on + strand, within Psest_3320 at 3483.519 kb on - strand, within Psest_3320 at 3483.520 kb on + strand, within Psest_3320 at 3483.644 kb on - strand at 3483.644 kb on - strand at 3483.644 kb on - strand at 3483.764 kb on + strand at 3483.764 kb on + strand at 3483.765 kb on - strand at 3483.906 kb on - strand, within Psest_3321 at 3483.932 kb on - strand, within Psest_3321 at 3483.995 kb on - strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.996 kb on + strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3483.997 kb on - strand, within Psest_3321 at 3484.115 kb on - strand, within Psest_3321 at 3484.116 kb on + strand, within Psest_3321 at 3484.117 kb on - strand, within Psest_3321 at 3484.117 kb on - strand, within Psest_3321 at 3484.117 kb on - strand, within Psest_3321 at 3484.206 kb on + strand, within Psest_3321 at 3484.275 kb on + strand, within Psest_3321 at 3484.471 kb on + strand, within Psest_3321 at 3484.595 kb on + strand at 3484.596 kb on - strand at 3484.596 kb on - strand at 3484.720 kb on + strand at 3484.777 kb on - strand at 3484.848 kb on + strand at 3484.993 kb on + strand at 3484.993 kb on + strand at 3484.993 kb on + strand at 3484.993 kb on + strand at 3484.993 kb on + strand at 3484.994 kb on - strand at 3484.994 kb on - strand at 3484.994 kb on - strand at 3485.290 kb on + strand, within Psest_3322 at 3485.291 kb on - strand, within Psest_3322 at 3485.291 kb on - strand, within Psest_3322
Per-strain Table
Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.00008 mg/ml remove 3,482,774 + Psest_3320 0.31 -0.2 3,482,775 - Psest_3320 0.31 +0.9 3,482,775 - Psest_3320 0.31 +0.3 3,482,775 - Psest_3320 0.31 +0.6 3,482,776 + Psest_3320 0.31 -0.2 3,482,776 + Psest_3320 0.31 -0.0 3,482,776 + Psest_3320 0.31 -0.0 3,482,776 + Psest_3320 0.31 -0.5 3,482,776 + Psest_3320 0.31 +0.4 3,482,776 + Psest_3320 0.31 -0.4 3,482,776 + Psest_3320 0.31 -0.8 3,482,777 - Psest_3320 0.32 -1.0 3,482,777 - Psest_3320 0.32 +0.4 3,482,777 - Psest_3320 0.32 +0.4 3,482,777 - Psest_3320 0.32 +0.5 3,483,124 + Psest_3320 0.56 -0.1 3,483,124 + Psest_3320 0.56 -0.6 3,483,125 - Psest_3320 0.56 +0.0 3,483,125 - Psest_3320 0.56 -0.2 3,483,400 + Psest_3320 0.75 +0.3 3,483,519 - Psest_3320 0.83 +1.3 3,483,520 + Psest_3320 0.83 +0.6 3,483,644 - +0.5 3,483,644 - +1.0 3,483,644 - +0.3 3,483,764 + -0.0 3,483,764 + -2.5 3,483,765 - +1.9 3,483,906 - Psest_3321 0.16 -1.1 3,483,932 - Psest_3321 0.20 +0.4 3,483,995 - Psest_3321 0.27 +1.1 3,483,996 + Psest_3321 0.27 -1.0 3,483,996 + Psest_3321 0.27 -0.7 3,483,996 + Psest_3321 0.27 +0.3 3,483,996 + Psest_3321 0.27 -0.9 3,483,996 + Psest_3321 0.27 -0.2 3,483,996 + Psest_3321 0.27 -1.2 3,483,996 + Psest_3321 0.27 +0.9 3,483,996 + Psest_3321 0.27 -1.1 3,483,996 + Psest_3321 0.27 +0.2 3,483,996 + Psest_3321 0.27 -0.9 3,483,996 + Psest_3321 0.27 -1.8 3,483,997 - Psest_3321 0.27 -0.3 3,483,997 - Psest_3321 0.27 +1.5 3,483,997 - Psest_3321 0.27 -0.2 3,483,997 - Psest_3321 0.27 +0.3 3,483,997 - Psest_3321 0.27 +0.0 3,483,997 - Psest_3321 0.27 -0.6 3,483,997 - Psest_3321 0.27 -0.4 3,483,997 - Psest_3321 0.27 +1.2 3,483,997 - Psest_3321 0.27 -2.5 3,483,997 - Psest_3321 0.27 -0.2 3,483,997 - Psest_3321 0.27 -1.1 3,483,997 - Psest_3321 0.27 -0.1 3,483,997 - Psest_3321 0.27 -0.7 3,483,997 - Psest_3321 0.27 +0.4 3,483,997 - Psest_3321 0.27 -1.4 3,483,997 - Psest_3321 0.27 -1.1 3,484,115 - Psest_3321 0.41 -1.7 3,484,116 + Psest_3321 0.41 +0.3 3,484,117 - Psest_3321 0.41 -0.5 3,484,117 - Psest_3321 0.41 -0.9 3,484,117 - Psest_3321 0.41 +1.4 3,484,206 + Psest_3321 0.52 -0.8 3,484,275 + Psest_3321 0.60 -0.7 3,484,471 + Psest_3321 0.83 -0.8 3,484,595 + -1.6 3,484,596 - -0.3 3,484,596 - +0.8 3,484,720 + -3.0 3,484,777 - -3.6 3,484,848 + -2.1 3,484,993 + -0.8 3,484,993 + -3.1 3,484,993 + -3.8 3,484,993 + -1.1 3,484,993 + -3.1 3,484,994 - -2.7 3,484,994 - -0.1 3,484,994 - -2.5 3,485,290 + Psest_3322 0.17 -2.1 3,485,291 - Psest_3322 0.17 -1.5 3,485,291 - Psest_3322 0.17 -3.5
Or see this region's nucleotide sequence