Experiment: Def Polymyxin B sulfate 0.00008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3013 and Psest_3014 are separated by 124 nucleotides Psest_3014 and Psest_3015 overlap by 4 nucleotides Psest_3015 and Psest_3016 are separated by 46 nucleotides
Psest_3013: Psest_3013 - cobyrinic acid a,c-diamide synthase, at 3,200,903 to 3,202,195
_3013
Psest_3014: Psest_3014 - cob(I)alamin adenosyltransferase, at 3,202,320 to 3,202,931
_3014
Psest_3015: Psest_3015 - hypothetical protein, at 3,202,928 to 3,203,497
_3015
Psest_3016: Psest_3016 - TonB-dependent vitamin B12 receptor, at 3,203,544 to 3,205,397
_3016
Position (kb) 3202
3203 Strain fitness (log2 ratio) -1
0
1
2 at 3201.345 kb on + strand, within Psest_3013 at 3201.346 kb on - strand, within Psest_3013 at 3201.442 kb on - strand, within Psest_3013 at 3202.012 kb on - strand, within Psest_3013 at 3202.186 kb on + strand at 3202.218 kb on - strand at 3202.285 kb on + strand at 3202.285 kb on + strand at 3202.286 kb on - strand at 3202.286 kb on - strand at 3202.347 kb on - strand at 3202.507 kb on + strand, within Psest_3014 at 3202.507 kb on + strand, within Psest_3014 at 3202.507 kb on + strand, within Psest_3014 at 3202.660 kb on + strand, within Psest_3014 at 3203.001 kb on + strand, within Psest_3015 at 3203.002 kb on - strand, within Psest_3015 at 3203.034 kb on + strand, within Psest_3015 at 3203.034 kb on + strand, within Psest_3015 at 3203.034 kb on + strand, within Psest_3015 at 3203.035 kb on - strand, within Psest_3015 at 3203.035 kb on - strand, within Psest_3015 at 3203.035 kb on - strand, within Psest_3015 at 3203.035 kb on - strand, within Psest_3015 at 3203.038 kb on + strand, within Psest_3015 at 3203.038 kb on + strand, within Psest_3015 at 3203.039 kb on - strand, within Psest_3015 at 3203.095 kb on - strand, within Psest_3015 at 3203.121 kb on + strand, within Psest_3015 at 3203.171 kb on - strand, within Psest_3015 at 3203.199 kb on + strand, within Psest_3015 at 3203.199 kb on + strand, within Psest_3015 at 3203.199 kb on + strand, within Psest_3015 at 3203.199 kb on + strand, within Psest_3015 at 3203.199 kb on + strand, within Psest_3015 at 3203.229 kb on + strand, within Psest_3015 at 3203.475 kb on + strand at 3203.545 kb on + strand at 3203.545 kb on + strand at 3203.545 kb on + strand at 3203.546 kb on - strand at 3203.557 kb on + strand at 3203.572 kb on + strand at 3203.572 kb on + strand at 3203.596 kb on + strand at 3203.614 kb on + strand at 3203.887 kb on + strand, within Psest_3016 at 3203.887 kb on + strand, within Psest_3016 at 3203.888 kb on - strand, within Psest_3016 at 3203.888 kb on - strand, within Psest_3016
Per-strain Table
Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.00008 mg/ml remove 3,201,345 + Psest_3013 0.34 +0.2 3,201,346 - Psest_3013 0.34 +0.2 3,201,442 - Psest_3013 0.42 +0.7 3,202,012 - Psest_3013 0.86 +1.0 3,202,186 + +0.8 3,202,218 - +0.3 3,202,285 + -1.5 3,202,285 + -0.1 3,202,286 - +2.2 3,202,286 - +1.8 3,202,347 - +1.2 3,202,507 + Psest_3014 0.31 +0.9 3,202,507 + Psest_3014 0.31 +1.1 3,202,507 + Psest_3014 0.31 -0.7 3,202,660 + Psest_3014 0.56 -0.6 3,203,001 + Psest_3015 0.13 -0.2 3,203,002 - Psest_3015 0.13 -0.3 3,203,034 + Psest_3015 0.19 +0.7 3,203,034 + Psest_3015 0.19 -0.4 3,203,034 + Psest_3015 0.19 -0.7 3,203,035 - Psest_3015 0.19 +0.5 3,203,035 - Psest_3015 0.19 -1.7 3,203,035 - Psest_3015 0.19 +0.8 3,203,035 - Psest_3015 0.19 -0.0 3,203,038 + Psest_3015 0.19 -0.7 3,203,038 + Psest_3015 0.19 -0.2 3,203,039 - Psest_3015 0.19 -0.5 3,203,095 - Psest_3015 0.29 +0.3 3,203,121 + Psest_3015 0.34 -0.7 3,203,171 - Psest_3015 0.43 -1.2 3,203,199 + Psest_3015 0.48 -1.0 3,203,199 + Psest_3015 0.48 -0.3 3,203,199 + Psest_3015 0.48 -0.7 3,203,199 + Psest_3015 0.48 -0.0 3,203,199 + Psest_3015 0.48 -0.3 3,203,229 + Psest_3015 0.53 -0.1 3,203,475 + +1.1 3,203,545 + +0.3 3,203,545 + +0.3 3,203,545 + +0.7 3,203,546 - +0.2 3,203,557 + +0.1 3,203,572 + +1.0 3,203,572 + +0.5 3,203,596 + +1.1 3,203,614 + -0.1 3,203,887 + Psest_3016 0.19 +0.3 3,203,887 + Psest_3016 0.19 +0.1 3,203,888 - Psest_3016 0.19 +2.0 3,203,888 - Psest_3016 0.19 +0.7
Or see this region's nucleotide sequence