Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1925

Experiment: Def Polymyxin B sulfate 0.00008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1924 and Psest_1925 are separated by 73 nucleotidesPsest_1925 and Psest_1926 are separated by 25 nucleotides Psest_1924: Psest_1924 - adhesin-associated MmpL efflux pump (from data), at 2,032,905 to 2,035,259 _1924 Psest_1925: Psest_1925 - uroporphyrin-III C-methyltransferase, at 2,035,333 to 2,036,070 _1925 Psest_1926: Psest_1926 - Uncharacterized anaerobic dehydrogenase, at 2,036,096 to 2,038,801 _1926 Position (kb) 2035 2036 2037Strain fitness (log2 ratio) -1 0 1 2 3 4at 2034.344 kb on - strand, within Psest_1924at 2034.445 kb on + strand, within Psest_1924at 2034.445 kb on + strand, within Psest_1924at 2034.446 kb on - strand, within Psest_1924at 2034.446 kb on - strand, within Psest_1924at 2034.446 kb on - strand, within Psest_1924at 2034.579 kb on + strand, within Psest_1924at 2034.579 kb on + strand, within Psest_1924at 2034.579 kb on + strand, within Psest_1924at 2034.579 kb on + strand, within Psest_1924at 2034.579 kb on + strand, within Psest_1924at 2034.579 kb on + strand, within Psest_1924at 2034.579 kb on + strand, within Psest_1924at 2034.579 kb on + strand, within Psest_1924at 2034.579 kb on + strand, within Psest_1924at 2034.579 kb on + strand, within Psest_1924at 2034.580 kb on - strand, within Psest_1924at 2034.580 kb on - strand, within Psest_1924at 2034.580 kb on - strand, within Psest_1924at 2034.580 kb on - strand, within Psest_1924at 2034.580 kb on - strand, within Psest_1924at 2034.580 kb on - strand, within Psest_1924at 2034.792 kb on + strand, within Psest_1924at 2034.793 kb on - strand, within Psest_1924at 2034.793 kb on - strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.981 kb on + strand, within Psest_1924at 2034.982 kb on - strand, within Psest_1924at 2034.982 kb on - strand, within Psest_1924at 2034.982 kb on - strand, within Psest_1924at 2034.982 kb on - strand, within Psest_1924at 2034.982 kb on - strand, within Psest_1924at 2034.982 kb on - strand, within Psest_1924at 2034.987 kb on + strand, within Psest_1924at 2034.987 kb on + strand, within Psest_1924at 2034.987 kb on + strand, within Psest_1924at 2034.987 kb on + strand, within Psest_1924at 2034.987 kb on + strand, within Psest_1924at 2034.987 kb on + strand, within Psest_1924at 2034.987 kb on + strand, within Psest_1924at 2034.987 kb on + strand, within Psest_1924at 2034.987 kb on + strand, within Psest_1924at 2034.987 kb on + strand, within Psest_1924at 2034.988 kb on - strand, within Psest_1924at 2034.988 kb on - strand, within Psest_1924at 2034.988 kb on - strand, within Psest_1924at 2034.988 kb on - strand, within Psest_1924at 2034.988 kb on - strand, within Psest_1924at 2034.988 kb on - strand, within Psest_1924at 2034.988 kb on - strand, within Psest_1924at 2034.988 kb on - strand, within Psest_1924at 2034.988 kb on - strand, within Psest_1924at 2034.988 kb on - strand, within Psest_1924at 2035.038 kb on + strandat 2035.039 kb on - strandat 2035.039 kb on - strandat 2035.041 kb on + strandat 2035.041 kb on + strandat 2035.042 kb on - strandat 2035.042 kb on - strandat 2035.042 kb on - strandat 2035.042 kb on - strandat 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.571 kb on + strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.572 kb on - strand, within Psest_1925at 2035.848 kb on - strand, within Psest_1925at 2036.258 kb on - strandat 2036.258 kb on - strandat 2036.768 kb on + strand, within Psest_1926at 2036.768 kb on + strand, within Psest_1926at 2036.768 kb on + strand, within Psest_1926at 2036.768 kb on + strand, within Psest_1926at 2036.769 kb on - strand, within Psest_1926at 2036.769 kb on - strand, within Psest_1926at 2036.769 kb on - strand, within Psest_1926at 2036.769 kb on - strand, within Psest_1926

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.00008 mg/ml
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2,034,344 - Psest_1924 0.61 +3.0
2,034,445 + Psest_1924 0.65 +3.0
2,034,445 + Psest_1924 0.65 +2.9
2,034,446 - Psest_1924 0.65 +2.6
2,034,446 - Psest_1924 0.65 +3.3
2,034,446 - Psest_1924 0.65 +2.6
2,034,579 + Psest_1924 0.71 +2.7
2,034,579 + Psest_1924 0.71 +2.3
2,034,579 + Psest_1924 0.71 +2.9
2,034,579 + Psest_1924 0.71 +2.8
2,034,579 + Psest_1924 0.71 +2.8
2,034,579 + Psest_1924 0.71 +2.5
2,034,579 + Psest_1924 0.71 +3.2
2,034,579 + Psest_1924 0.71 +2.7
2,034,579 + Psest_1924 0.71 +3.3
2,034,579 + Psest_1924 0.71 +2.5
2,034,580 - Psest_1924 0.71 +1.9
2,034,580 - Psest_1924 0.71 +2.8
2,034,580 - Psest_1924 0.71 +2.6
2,034,580 - Psest_1924 0.71 +2.4
2,034,580 - Psest_1924 0.71 +2.4
2,034,580 - Psest_1924 0.71 +2.8
2,034,792 + Psest_1924 0.80 +3.1
2,034,793 - Psest_1924 0.80 +2.7
2,034,793 - Psest_1924 0.80 +2.4
2,034,981 + Psest_1924 0.88 +2.2
2,034,981 + Psest_1924 0.88 +3.1
2,034,981 + Psest_1924 0.88 +2.5
2,034,981 + Psest_1924 0.88 +2.8
2,034,981 + Psest_1924 0.88 +3.8
2,034,981 + Psest_1924 0.88 +2.7
2,034,981 + Psest_1924 0.88 +3.0
2,034,981 + Psest_1924 0.88 +2.8
2,034,981 + Psest_1924 0.88 +2.4
2,034,981 + Psest_1924 0.88 +3.1
2,034,981 + Psest_1924 0.88 +3.0
2,034,981 + Psest_1924 0.88 +2.9
2,034,982 - Psest_1924 0.88 +2.6
2,034,982 - Psest_1924 0.88 +3.7
2,034,982 - Psest_1924 0.88 +2.6
2,034,982 - Psest_1924 0.88 +2.5
2,034,982 - Psest_1924 0.88 +2.7
2,034,982 - Psest_1924 0.88 +2.9
2,034,987 + Psest_1924 0.88 +3.6
2,034,987 + Psest_1924 0.88 +3.2
2,034,987 + Psest_1924 0.88 +3.1
2,034,987 + Psest_1924 0.88 +3.8
2,034,987 + Psest_1924 0.88 +3.0
2,034,987 + Psest_1924 0.88 +3.7
2,034,987 + Psest_1924 0.88 +2.7
2,034,987 + Psest_1924 0.88 +3.4
2,034,987 + Psest_1924 0.88 +3.2
2,034,987 + Psest_1924 0.88 +3.6
2,034,988 - Psest_1924 0.88 +2.3
2,034,988 - Psest_1924 0.88 +2.2
2,034,988 - Psest_1924 0.88 +2.9
2,034,988 - Psest_1924 0.88 +2.6
2,034,988 - Psest_1924 0.88 +2.2
2,034,988 - Psest_1924 0.88 +2.2
2,034,988 - Psest_1924 0.88 +2.0
2,034,988 - Psest_1924 0.88 +2.7
2,034,988 - Psest_1924 0.88 +2.5
2,034,988 - Psest_1924 0.88 +2.6
2,035,038 + +2.7
2,035,039 - +2.9
2,035,039 - +2.1
2,035,041 + +2.6
2,035,041 + +2.9
2,035,042 - +2.6
2,035,042 - +2.5
2,035,042 - +3.1
2,035,042 - +2.9
2,035,571 + Psest_1925 0.32 +0.3
2,035,571 + Psest_1925 0.32 +0.3
2,035,571 + Psest_1925 0.32 -0.0
2,035,571 + Psest_1925 0.32 -0.1
2,035,571 + Psest_1925 0.32 -0.3
2,035,571 + Psest_1925 0.32 -1.3
2,035,571 + Psest_1925 0.32 +1.5
2,035,571 + Psest_1925 0.32 +1.4
2,035,571 + Psest_1925 0.32 +1.2
2,035,571 + Psest_1925 0.32 -0.3
2,035,571 + Psest_1925 0.32 +0.2
2,035,571 + Psest_1925 0.32 +0.2
2,035,571 + Psest_1925 0.32 +0.7
2,035,571 + Psest_1925 0.32 +0.9
2,035,572 - Psest_1925 0.32 +0.7
2,035,572 - Psest_1925 0.32 +0.7
2,035,572 - Psest_1925 0.32 +0.5
2,035,572 - Psest_1925 0.32 +1.7
2,035,572 - Psest_1925 0.32 +0.4
2,035,572 - Psest_1925 0.32 +1.2
2,035,572 - Psest_1925 0.32 +0.4
2,035,572 - Psest_1925 0.32 +0.6
2,035,572 - Psest_1925 0.32 +0.6
2,035,572 - Psest_1925 0.32 +1.2
2,035,572 - Psest_1925 0.32 +0.4
2,035,572 - Psest_1925 0.32 +1.0
2,035,572 - Psest_1925 0.32 +1.0
2,035,572 - Psest_1925 0.32 +0.5
2,035,572 - Psest_1925 0.32 +0.6
2,035,572 - Psest_1925 0.32 +0.2
2,035,572 - Psest_1925 0.32 +0.7
2,035,572 - Psest_1925 0.32 -0.6
2,035,572 - Psest_1925 0.32 +1.2
2,035,848 - Psest_1925 0.70 +0.8
2,036,258 - -0.7
2,036,258 - +1.2
2,036,768 + Psest_1926 0.25 +0.6
2,036,768 + Psest_1926 0.25 -0.5
2,036,768 + Psest_1926 0.25 +0.2
2,036,768 + Psest_1926 0.25 +0.2
2,036,769 - Psest_1926 0.25 +1.0
2,036,769 - Psest_1926 0.25 +0.0
2,036,769 - Psest_1926 0.25 +0.9
2,036,769 - Psest_1926 0.25 -0.3

Or see this region's nucleotide sequence