Experiment: Def Polymyxin B sulfate 0.00008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1924 and Psest_1925 are separated by 73 nucleotides Psest_1925 and Psest_1926 are separated by 25 nucleotides
Psest_1924: Psest_1924 - adhesin-associated MmpL efflux pump (from data) , at 2,032,905 to 2,035,259
_1924
Psest_1925: Psest_1925 - uroporphyrin-III C-methyltransferase, at 2,035,333 to 2,036,070
_1925
Psest_1926: Psest_1926 - Uncharacterized anaerobic dehydrogenase, at 2,036,096 to 2,038,801
_1926
Position (kb)
2035
2036
2037 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2034.344 kb on - strand, within Psest_1924 at 2034.445 kb on + strand, within Psest_1924 at 2034.445 kb on + strand, within Psest_1924 at 2034.446 kb on - strand, within Psest_1924 at 2034.446 kb on - strand, within Psest_1924 at 2034.446 kb on - strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.579 kb on + strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.580 kb on - strand, within Psest_1924 at 2034.792 kb on + strand, within Psest_1924 at 2034.793 kb on - strand, within Psest_1924 at 2034.793 kb on - strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.981 kb on + strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.982 kb on - strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.987 kb on + strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2034.988 kb on - strand, within Psest_1924 at 2035.038 kb on + strand at 2035.039 kb on - strand at 2035.039 kb on - strand at 2035.041 kb on + strand at 2035.041 kb on + strand at 2035.042 kb on - strand at 2035.042 kb on - strand at 2035.042 kb on - strand at 2035.042 kb on - strand at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.571 kb on + strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.572 kb on - strand, within Psest_1925 at 2035.848 kb on - strand, within Psest_1925 at 2036.258 kb on - strand at 2036.258 kb on - strand at 2036.768 kb on + strand, within Psest_1926 at 2036.768 kb on + strand, within Psest_1926 at 2036.768 kb on + strand, within Psest_1926 at 2036.768 kb on + strand, within Psest_1926 at 2036.769 kb on - strand, within Psest_1926 at 2036.769 kb on - strand, within Psest_1926 at 2036.769 kb on - strand, within Psest_1926 at 2036.769 kb on - strand, within Psest_1926
Per-strain Table
Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.00008 mg/ml remove 2,034,344 - Psest_1924 0.61 +3.0 2,034,445 + Psest_1924 0.65 +3.0 2,034,445 + Psest_1924 0.65 +2.9 2,034,446 - Psest_1924 0.65 +2.6 2,034,446 - Psest_1924 0.65 +3.3 2,034,446 - Psest_1924 0.65 +2.6 2,034,579 + Psest_1924 0.71 +2.7 2,034,579 + Psest_1924 0.71 +2.3 2,034,579 + Psest_1924 0.71 +2.9 2,034,579 + Psest_1924 0.71 +2.8 2,034,579 + Psest_1924 0.71 +2.8 2,034,579 + Psest_1924 0.71 +2.5 2,034,579 + Psest_1924 0.71 +3.2 2,034,579 + Psest_1924 0.71 +2.7 2,034,579 + Psest_1924 0.71 +3.3 2,034,579 + Psest_1924 0.71 +2.5 2,034,580 - Psest_1924 0.71 +1.9 2,034,580 - Psest_1924 0.71 +2.8 2,034,580 - Psest_1924 0.71 +2.6 2,034,580 - Psest_1924 0.71 +2.4 2,034,580 - Psest_1924 0.71 +2.4 2,034,580 - Psest_1924 0.71 +2.8 2,034,792 + Psest_1924 0.80 +3.1 2,034,793 - Psest_1924 0.80 +2.7 2,034,793 - Psest_1924 0.80 +2.4 2,034,981 + Psest_1924 0.88 +2.2 2,034,981 + Psest_1924 0.88 +3.1 2,034,981 + Psest_1924 0.88 +2.5 2,034,981 + Psest_1924 0.88 +2.8 2,034,981 + Psest_1924 0.88 +3.8 2,034,981 + Psest_1924 0.88 +2.7 2,034,981 + Psest_1924 0.88 +3.0 2,034,981 + Psest_1924 0.88 +2.8 2,034,981 + Psest_1924 0.88 +2.4 2,034,981 + Psest_1924 0.88 +3.1 2,034,981 + Psest_1924 0.88 +3.0 2,034,981 + Psest_1924 0.88 +2.9 2,034,982 - Psest_1924 0.88 +2.6 2,034,982 - Psest_1924 0.88 +3.7 2,034,982 - Psest_1924 0.88 +2.6 2,034,982 - Psest_1924 0.88 +2.5 2,034,982 - Psest_1924 0.88 +2.7 2,034,982 - Psest_1924 0.88 +2.9 2,034,987 + Psest_1924 0.88 +3.6 2,034,987 + Psest_1924 0.88 +3.2 2,034,987 + Psest_1924 0.88 +3.1 2,034,987 + Psest_1924 0.88 +3.8 2,034,987 + Psest_1924 0.88 +3.0 2,034,987 + Psest_1924 0.88 +3.7 2,034,987 + Psest_1924 0.88 +2.7 2,034,987 + Psest_1924 0.88 +3.4 2,034,987 + Psest_1924 0.88 +3.2 2,034,987 + Psest_1924 0.88 +3.6 2,034,988 - Psest_1924 0.88 +2.3 2,034,988 - Psest_1924 0.88 +2.2 2,034,988 - Psest_1924 0.88 +2.9 2,034,988 - Psest_1924 0.88 +2.6 2,034,988 - Psest_1924 0.88 +2.2 2,034,988 - Psest_1924 0.88 +2.2 2,034,988 - Psest_1924 0.88 +2.0 2,034,988 - Psest_1924 0.88 +2.7 2,034,988 - Psest_1924 0.88 +2.5 2,034,988 - Psest_1924 0.88 +2.6 2,035,038 + +2.7 2,035,039 - +2.9 2,035,039 - +2.1 2,035,041 + +2.6 2,035,041 + +2.9 2,035,042 - +2.6 2,035,042 - +2.5 2,035,042 - +3.1 2,035,042 - +2.9 2,035,571 + Psest_1925 0.32 +0.3 2,035,571 + Psest_1925 0.32 +0.3 2,035,571 + Psest_1925 0.32 -0.0 2,035,571 + Psest_1925 0.32 -0.1 2,035,571 + Psest_1925 0.32 -0.3 2,035,571 + Psest_1925 0.32 -1.3 2,035,571 + Psest_1925 0.32 +1.5 2,035,571 + Psest_1925 0.32 +1.4 2,035,571 + Psest_1925 0.32 +1.2 2,035,571 + Psest_1925 0.32 -0.3 2,035,571 + Psest_1925 0.32 +0.2 2,035,571 + Psest_1925 0.32 +0.2 2,035,571 + Psest_1925 0.32 +0.7 2,035,571 + Psest_1925 0.32 +0.9 2,035,572 - Psest_1925 0.32 +0.7 2,035,572 - Psest_1925 0.32 +0.7 2,035,572 - Psest_1925 0.32 +0.5 2,035,572 - Psest_1925 0.32 +1.7 2,035,572 - Psest_1925 0.32 +0.4 2,035,572 - Psest_1925 0.32 +1.2 2,035,572 - Psest_1925 0.32 +0.4 2,035,572 - Psest_1925 0.32 +0.6 2,035,572 - Psest_1925 0.32 +0.6 2,035,572 - Psest_1925 0.32 +1.2 2,035,572 - Psest_1925 0.32 +0.4 2,035,572 - Psest_1925 0.32 +1.0 2,035,572 - Psest_1925 0.32 +1.0 2,035,572 - Psest_1925 0.32 +0.5 2,035,572 - Psest_1925 0.32 +0.6 2,035,572 - Psest_1925 0.32 +0.2 2,035,572 - Psest_1925 0.32 +0.7 2,035,572 - Psest_1925 0.32 -0.6 2,035,572 - Psest_1925 0.32 +1.2 2,035,848 - Psest_1925 0.70 +0.8 2,036,258 - -0.7 2,036,258 - +1.2 2,036,768 + Psest_1926 0.25 +0.6 2,036,768 + Psest_1926 0.25 -0.5 2,036,768 + Psest_1926 0.25 +0.2 2,036,768 + Psest_1926 0.25 +0.2 2,036,769 - Psest_1926 0.25 +1.0 2,036,769 - Psest_1926 0.25 +0.0 2,036,769 - Psest_1926 0.25 +0.9 2,036,769 - Psest_1926 0.25 -0.3
Or see this region's nucleotide sequence