Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1688

Experiment: Def Polymyxin B sulfate 0.00008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1687 and Psest_1688 are separated by 14 nucleotidesPsest_1688 and Psest_1689 are separated by 192 nucleotidesPsest_1689 and Psest_1690 are separated by 172 nucleotides Psest_1687: Psest_1687 - malonyl CoA-acyl carrier protein transacylase, at 1,795,384 to 1,796,322 _1687 Psest_1688: Psest_1688 - 3-oxoacyl-(acyl-carrier-protein) reductase, at 1,796,337 to 1,797,080 _1688 Psest_1689: Psest_1689 - acyl carrier protein, at 1,797,273 to 1,797,509 _1689 Psest_1690: Psest_1690 - beta-ketoacyl-acyl-carrier-protein synthase II, at 1,797,682 to 1,798,926 _1690 Position (kb) 1796 1797 1798Strain fitness (log2 ratio) -1 0 1 2at 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.126 kb on + strandat 1797.126 kb on + strandat 1797.130 kb on + strandat 1797.130 kb on + strandat 1797.130 kb on + strandat 1797.130 kb on + strandat 1797.132 kb on + strandat 1797.132 kb on + strandat 1797.217 kb on + strandat 1797.217 kb on + strandat 1797.217 kb on + strandat 1797.217 kb on + strandat 1797.217 kb on + strandat 1797.219 kb on + strandat 1797.219 kb on + strandat 1797.219 kb on + strandat 1797.219 kb on + strandat 1797.219 kb on + strandat 1797.507 kb on + strandat 1797.514 kb on + strandat 1797.662 kb on + strandat 1797.666 kb on + strandat 1797.666 kb on + strandat 1797.668 kb on + strandat 1797.668 kb on + strandat 1797.668 kb on + strandat 1797.668 kb on + strandat 1797.668 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.00008 mg/ml
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1,797,069 + +1.6
1,797,069 + +0.0
1,797,069 + +2.0
1,797,069 + +0.8
1,797,069 + +0.9
1,797,069 + +0.1
1,797,069 + +0.7
1,797,069 + +0.3
1,797,069 + +0.2
1,797,069 + +0.7
1,797,069 + +1.0
1,797,069 + -0.2
1,797,069 + +1.0
1,797,126 + +0.7
1,797,126 + +0.9
1,797,130 + +1.4
1,797,130 + +0.6
1,797,130 + -1.4
1,797,130 + +2.0
1,797,132 + +1.6
1,797,132 + +1.1
1,797,217 + +0.4
1,797,217 + +0.7
1,797,217 + -0.6
1,797,217 + +1.8
1,797,217 + +0.0
1,797,219 + +0.9
1,797,219 + +0.3
1,797,219 + -0.8
1,797,219 + +2.0
1,797,219 + +1.1
1,797,507 + +0.8
1,797,514 + +0.8
1,797,662 + -1.2
1,797,666 + -0.2
1,797,666 + -0.3
1,797,668 + +0.2
1,797,668 + +2.4
1,797,668 + -1.2
1,797,668 + +0.1
1,797,668 + +0.7

Or see this region's nucleotide sequence