Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1138

Experiment: Def Polymyxin B sulfate 0.00008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1137 and Psest_1138 overlap by 8 nucleotidesPsest_1138 and Psest_1139 are separated by 19 nucleotides Psest_1137: Psest_1137 - hypothetical protein, at 1,234,405 to 1,235,433 _1137 Psest_1138: Psest_1138 - ATP:cob(I)alamin adenosyltransferase, at 1,235,426 to 1,236,016 _1138 Psest_1139: Psest_1139 - PAS domain S-box, at 1,236,036 to 1,238,051 _1139 Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1234.754 kb on + strand, within Psest_1137at 1234.755 kb on - strand, within Psest_1137at 1234.755 kb on - strand, within Psest_1137at 1234.755 kb on - strand, within Psest_1137at 1234.755 kb on - strand, within Psest_1137at 1234.755 kb on - strand, within Psest_1137at 1234.822 kb on - strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.968 kb on - strand, within Psest_1137at 1234.968 kb on - strand, within Psest_1137at 1234.968 kb on - strand, within Psest_1137at 1234.968 kb on - strand, within Psest_1137at 1234.968 kb on - strand, within Psest_1137at 1234.988 kb on + strand, within Psest_1137at 1235.074 kb on + strand, within Psest_1137at 1235.108 kb on + strand, within Psest_1137at 1235.108 kb on + strand, within Psest_1137at 1235.109 kb on - strand, within Psest_1137at 1235.109 kb on - strand, within Psest_1137at 1235.109 kb on - strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.130 kb on - strand, within Psest_1137at 1235.130 kb on - strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.222 kb on + strand, within Psest_1137at 1235.222 kb on + strand, within Psest_1137at 1235.223 kb on - strand, within Psest_1137at 1235.292 kb on + strand, within Psest_1137at 1235.292 kb on + strand, within Psest_1137at 1235.314 kb on + strand, within Psest_1137at 1235.314 kb on + strand, within Psest_1137at 1235.315 kb on - strand, within Psest_1137at 1235.315 kb on - strand, within Psest_1137at 1235.870 kb on + strand, within Psest_1138at 1236.022 kb on - strandat 1236.022 kb on - strandat 1236.025 kb on - strandat 1236.154 kb on + strandat 1236.154 kb on + strandat 1236.154 kb on + strandat 1236.155 kb on - strandat 1236.495 kb on + strand, within Psest_1139at 1236.938 kb on - strand, within Psest_1139

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Polymyxin B sulfate 0.00008 mg/ml
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1,234,754 + Psest_1137 0.34 -3.2
1,234,755 - Psest_1137 0.34 +0.3
1,234,755 - Psest_1137 0.34 +0.8
1,234,755 - Psest_1137 0.34 +0.6
1,234,755 - Psest_1137 0.34 +1.1
1,234,755 - Psest_1137 0.34 +1.9
1,234,822 - Psest_1137 0.41 +0.1
1,234,964 + Psest_1137 0.54 -0.3
1,234,964 + Psest_1137 0.54 -0.2
1,234,964 + Psest_1137 0.54 -0.3
1,234,964 + Psest_1137 0.54 -1.0
1,234,964 + Psest_1137 0.54 -0.2
1,234,964 + Psest_1137 0.54 -0.4
1,234,964 + Psest_1137 0.54 -0.1
1,234,964 + Psest_1137 0.54 +0.1
1,234,964 + Psest_1137 0.54 +1.0
1,234,964 + Psest_1137 0.54 +0.2
1,234,964 + Psest_1137 0.54 -0.6
1,234,964 + Psest_1137 0.54 -0.6
1,234,964 + Psest_1137 0.54 +0.3
1,234,964 + Psest_1137 0.54 -0.1
1,234,964 + Psest_1137 0.54 +0.0
1,234,964 + Psest_1137 0.54 +0.2
1,234,964 + Psest_1137 0.54 +1.0
1,234,965 - Psest_1137 0.54 -0.2
1,234,965 - Psest_1137 0.54 +0.6
1,234,965 - Psest_1137 0.54 +0.8
1,234,965 - Psest_1137 0.54 -0.0
1,234,965 - Psest_1137 0.54 +0.0
1,234,965 - Psest_1137 0.54 +0.1
1,234,965 - Psest_1137 0.54 +0.2
1,234,965 - Psest_1137 0.54 +0.4
1,234,965 - Psest_1137 0.54 +1.6
1,234,965 - Psest_1137 0.54 +1.1
1,234,965 - Psest_1137 0.54 +0.6
1,234,965 - Psest_1137 0.54 +0.1
1,234,965 - Psest_1137 0.54 +0.3
1,234,965 - Psest_1137 0.54 -0.0
1,234,965 - Psest_1137 0.54 -0.7
1,234,965 - Psest_1137 0.54 -0.9
1,234,965 - Psest_1137 0.54 -0.0
1,234,965 - Psest_1137 0.54 +0.7
1,234,965 - Psest_1137 0.54 -0.2
1,234,965 - Psest_1137 0.54 +1.1
1,234,965 - Psest_1137 0.54 +0.3
1,234,965 - Psest_1137 0.54 -0.4
1,234,965 - Psest_1137 0.54 +1.2
1,234,965 - Psest_1137 0.54 +0.3
1,234,965 - Psest_1137 0.54 +0.1
1,234,967 + Psest_1137 0.55 -0.8
1,234,967 + Psest_1137 0.55 -0.7
1,234,967 + Psest_1137 0.55 +0.4
1,234,967 + Psest_1137 0.55 -0.5
1,234,967 + Psest_1137 0.55 +0.4
1,234,967 + Psest_1137 0.55 -1.2
1,234,967 + Psest_1137 0.55 -1.0
1,234,967 + Psest_1137 0.55 +0.5
1,234,967 + Psest_1137 0.55 -0.3
1,234,968 - Psest_1137 0.55 +0.3
1,234,968 - Psest_1137 0.55 +0.8
1,234,968 - Psest_1137 0.55 +0.3
1,234,968 - Psest_1137 0.55 +0.5
1,234,968 - Psest_1137 0.55 +0.2
1,234,988 + Psest_1137 0.57 -0.9
1,235,074 + Psest_1137 0.65 -0.7
1,235,108 + Psest_1137 0.68 +0.5
1,235,108 + Psest_1137 0.68 +0.1
1,235,109 - Psest_1137 0.68 +0.2
1,235,109 - Psest_1137 0.68 +0.3
1,235,109 - Psest_1137 0.68 -1.0
1,235,129 + Psest_1137 0.70 -0.4
1,235,129 + Psest_1137 0.70 +0.2
1,235,129 + Psest_1137 0.70 +0.2
1,235,129 + Psest_1137 0.70 +0.2
1,235,129 + Psest_1137 0.70 +0.4
1,235,129 + Psest_1137 0.70 +0.3
1,235,129 + Psest_1137 0.70 +0.5
1,235,129 + Psest_1137 0.70 -1.0
1,235,129 + Psest_1137 0.70 +0.3
1,235,129 + Psest_1137 0.70 -0.1
1,235,129 + Psest_1137 0.70 -0.3
1,235,129 + Psest_1137 0.70 -0.1
1,235,129 + Psest_1137 0.70 -0.2
1,235,129 + Psest_1137 0.70 +0.1
1,235,130 - Psest_1137 0.70 +0.1
1,235,130 - Psest_1137 0.70 +0.3
1,235,132 + Psest_1137 0.71 -0.7
1,235,132 + Psest_1137 0.71 +0.3
1,235,132 + Psest_1137 0.71 +0.8
1,235,132 + Psest_1137 0.71 +0.2
1,235,222 + Psest_1137 0.79 +0.8
1,235,222 + Psest_1137 0.79 -0.1
1,235,223 - Psest_1137 0.79 -0.2
1,235,292 + Psest_1137 0.86 -0.4
1,235,292 + Psest_1137 0.86 +0.5
1,235,314 + Psest_1137 0.88 +0.8
1,235,314 + Psest_1137 0.88 +0.2
1,235,315 - Psest_1137 0.88 -0.7
1,235,315 - Psest_1137 0.88 -1.7
1,235,870 + Psest_1138 0.75 +0.7
1,236,022 - +0.8
1,236,022 - +1.2
1,236,025 - -0.2
1,236,154 + -0.6
1,236,154 + -1.2
1,236,154 + -1.3
1,236,155 - +0.3
1,236,495 + Psest_1139 0.23 -0.0
1,236,938 - Psest_1139 0.45 +0.0

Or see this region's nucleotide sequence