Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05740

Experiment: McCas_formate_complete no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete no stress control
1,069,045	+				-2.2
1,069,063	-				+1.2
1,069,077	+				-2.0
1,069,077	+				-1.5
1,069,077	+				-2.2
1,069,111	-				-2.4
1,069,123	-				+0.7
1,069,124	+				+1.7
1,069,129	-				+0.6
1,069,129	-				+1.0
1,069,137	-				-2.8
1,069,137	-				+1.5
1,069,137	-				+0.1
1,069,137	-				-2.8
1,069,137	-				-1.9
1,069,142	+				-0.8
1,069,154	+				+0.1
1,069,157	-				-0.0
1,069,157	-				-3.9
1,069,157	-				-1.2
1,069,158	+				+1.0
1,069,158	+				+3.5
1,069,160	+				-3.4
1,069,161	-				-1.1
1,069,162	+				+0.0
1,069,779	-		MMJJ_RS05735	0.71	+0.3
1,069,855	+		MMJJ_RS05735	0.80	-1.9
1,069,985	+				-2.0
1,070,009	+				+0.7
1,070,071	-				-2.8
1,070,072	+				+2.2
1,070,082	-				+2.9
1,070,083	+				+3.4
1,070,085	+				-0.0
1,070,113	-				+1.4
1,070,113	-				+0.3
1,070,113	-				-1.0
1,070,116	-				+2.4
1,070,116	-				-0.4
1,070,117	+				+3.9
1,070,117	+				+0.5
1,070,212	-		MMJJ_RS05740	0.11	+2.4
1,070,223	-		MMJJ_RS05740	0.11	+3.3
1,070,223	-		MMJJ_RS05740	0.11	+3.4
1,070,251	+		MMJJ_RS05740	0.13	+0.4
1,070,280	-		MMJJ_RS05740	0.15	+1.0
1,070,281	+		MMJJ_RS05740	0.15	+1.6
1,070,284	-		MMJJ_RS05740	0.15	+0.3
1,070,284	-		MMJJ_RS05740	0.15	+2.5
1,070,285	+		MMJJ_RS05740	0.15	+2.8
1,070,292	-		MMJJ_RS05740	0.16	+0.1
1,070,292	-		MMJJ_RS05740	0.16	+2.9
1,070,293	+		MMJJ_RS05740	0.16	+1.4
1,070,293	+		MMJJ_RS05740	0.16	+4.9
1,070,294	-		MMJJ_RS05740	0.16	+2.3
1,070,367	+		MMJJ_RS05740	0.20	+2.9
1,070,413	-		MMJJ_RS05740	0.23	+0.6
1,070,477	+		MMJJ_RS05740	0.27	+0.3
1,070,484	-		MMJJ_RS05740	0.27	+2.0
1,070,515	-		MMJJ_RS05740	0.29	+2.7
1,070,516	+		MMJJ_RS05740	0.29	-0.1
1,070,516	+		MMJJ_RS05740	0.29	+0.8
1,070,522	-		MMJJ_RS05740	0.29	-0.7
1,070,523	+		MMJJ_RS05740	0.29	-2.3
1,070,523	+		MMJJ_RS05740	0.29	-0.6
1,070,523	+		MMJJ_RS05740	0.29	-1.9
1,070,523	+		MMJJ_RS05740	0.29	-3.6
1,070,532	-		MMJJ_RS05740	0.30	+2.2
1,070,532	-		MMJJ_RS05740	0.30	+3.5
1,070,533	+		MMJJ_RS05740	0.30	-0.3
1,070,592	+		MMJJ_RS05740	0.33	+3.3
1,070,642	-		MMJJ_RS05740	0.36	+2.8
1,070,763	+		MMJJ_RS05740	0.44	+1.0
1,070,772	-		MMJJ_RS05740	0.44	+1.3
1,070,773	+		MMJJ_RS05740	0.44	+0.1
1,070,804	+		MMJJ_RS05740	0.46	+1.8
1,070,816	+		MMJJ_RS05740	0.47	+0.3
1,070,825	+		MMJJ_RS05740	0.47	-1.4
1,070,825	+		MMJJ_RS05740	0.47	+4.4
1,070,866	-		MMJJ_RS05740	0.50	+0.7
1,070,871	-				+0.7
1,070,875	-		MMJJ_RS05740	0.50	+0.7
1,070,899	+		MMJJ_RS05740	0.52	+1.8
1,070,899	-		MMJJ_RS05740	0.52	+0.6
1,070,949	-		MMJJ_RS05740	0.55	+1.7
1,070,950	+		MMJJ_RS05740	0.55	+2.0
1,070,984	+		MMJJ_RS05740	0.57	-0.1
1,070,990	-		MMJJ_RS05740	0.57	+2.3
1,071,001	-		MMJJ_RS05740	0.58	+1.3
1,071,009	-		MMJJ_RS05740	0.58	+2.0
1,071,010	+		MMJJ_RS05740	0.58	-1.3
1,071,022	-		MMJJ_RS05740	0.59	+0.5
1,071,046	-		MMJJ_RS05740	0.60	+0.2
1,071,065	+		MMJJ_RS05740	0.62	+2.2
1,071,125	-		MMJJ_RS05740	0.65	+1.0
1,071,125	-		MMJJ_RS05740	0.65	+3.1
1,071,125	-		MMJJ_RS05740	0.65	+1.2
1,071,125	-		MMJJ_RS05740	0.65	+1.2
1,071,126	+		MMJJ_RS05740	0.65	-3.1
1,071,126	+		MMJJ_RS05740	0.65	+0.1
1,071,126	+		MMJJ_RS05740	0.65	-3.4
1,071,126	+		MMJJ_RS05740	0.65	+2.3
1,071,126	+		MMJJ_RS05740	0.65	+0.9
1,071,126	+		MMJJ_RS05740	0.65	-0.4
1,071,167	-		MMJJ_RS05740	0.68	+0.7
1,071,241	-		MMJJ_RS05740	0.72	+0.9
1,071,346	-		MMJJ_RS05740	0.78	+2.7
1,071,442	+		MMJJ_RS05740	0.84	+2.6
1,071,473	+		MMJJ_RS05740	0.86	+1.9
1,071,490	-		MMJJ_RS05740	0.87	+1.0
1,071,490	-		MMJJ_RS05740	0.87	+1.0
1,071,520	+		MMJJ_RS05740	0.89	+2.2
1,071,521	-		MMJJ_RS05740	0.89	+2.0
1,071,532	-		MMJJ_RS05740	0.89	+3.4
1,071,532	-		MMJJ_RS05740	0.89	+1.6
1,071,533	+				-0.0
1,071,533	+		MMJJ_RS05740	0.90	-2.1
1,071,566	+				+0.8
1,071,568	-				-0.8
1,071,584	-				+0.9
1,071,596	-				+0.7
1,071,597	+				+1.3
1,071,613	-				+2.5
1,071,613	-				+0.8
1,071,614	+				+4.4
1,071,619	-				+0.3
1,071,633	-				+2.7
1,071,633	-				+2.3
1,071,633	-				-2.0
1,071,634	+				+1.1
1,071,634	+				+3.9
1,071,634	+				+1.0
1,071,646	-				+2.4
1,071,647	+				+0.1
1,071,647	+				+3.0
1,071,648	-				+1.4
1,071,649	+				-2.6
1,071,654	-				+1.6
1,071,655	+				+3.2
1,071,655	+				-0.6
1,071,662	-				+1.6
1,071,676	-				-2.0
1,071,694	-				+2.1
1,071,694	-				+0.9
1,071,694	-				+1.7
1,071,694	-				+0.7
1,071,694	-				+0.7
1,071,694	-				-1.3
1,071,694	-				+1.7
1,071,695	+				+0.2
1,071,697	+				+2.6
1,071,709	+				-3.7
1,071,709	+				+2.0
1,071,769	-				+3.0
1,071,769	-				+1.6
1,071,770	+				-0.5
1,071,772	-				-0.5
1,071,776	-				-0.8
1,071,776	-				+2.1
1,071,776	-				+3.1
1,071,776	-				+1.6
1,071,786	-				+2.2
1,071,787	+				-1.8
1,071,829	-				-0.0
1,071,836	-				+0.9
1,071,928	-		MMJJ_RS05745	0.13	+0.5
1,071,999	-		MMJJ_RS05745	0.17	+1.9
1,071,999	-		MMJJ_RS05745	0.17	+0.7
1,072,000	+		MMJJ_RS05745	0.17	+1.9
1,072,000	+		MMJJ_RS05745	0.17	+1.2
1,072,000	+		MMJJ_RS05745	0.17	+1.2
1,072,003	+		MMJJ_RS05745	0.17	-0.2
1,072,085	-		MMJJ_RS05745	0.22	+1.1
1,072,111	-		MMJJ_RS05745	0.24	+0.0
1,072,111	-		MMJJ_RS05745	0.24	+2.8
1,072,111	-		MMJJ_RS05745	0.24	+3.3
1,072,111	-		MMJJ_RS05745	0.24	-3.2
1,072,112	+		MMJJ_RS05745	0.24	-1.7
1,072,139	-		MMJJ_RS05745	0.26	+1.6
1,072,247	+		MMJJ_RS05745	0.32	+2.1
1,072,252	+		MMJJ_RS05745	0.32	+2.4
1,072,268	-		MMJJ_RS05745	0.33	+2.1
1,072,293	+		MMJJ_RS05745	0.35	+2.4
1,072,335	+		MMJJ_RS05745	0.38	-0.3
1,072,474	-		MMJJ_RS05745	0.46	+1.4
1,072,474	-		MMJJ_RS05745	0.46	-2.0
1,072,475	+		MMJJ_RS05745	0.46	-3.5
1,072,506	-		MMJJ_RS05745	0.48	+2.7
1,072,507	+		MMJJ_RS05745	0.48	+1.1
1,072,531	-		MMJJ_RS05745	0.49	+2.5
1,072,559	-		MMJJ_RS05745	0.51	+2.3
1,072,574	+		MMJJ_RS05745	0.52	-0.9
1,072,588	-		MMJJ_RS05745	0.53	+2.2
1,072,589	+		MMJJ_RS05745	0.53	+2.8
1,072,604	-		MMJJ_RS05745	0.54	-1.8
1,072,605	+		MMJJ_RS05745	0.54	+1.6
1,072,664	-		MMJJ_RS05745	0.58	+0.8
1,072,665	+		MMJJ_RS05745	0.58	-0.1
1,072,665	+		MMJJ_RS05745	0.58	+0.1
1,072,665	+		MMJJ_RS05745	0.58	+1.4
1,072,665	+		MMJJ_RS05745	0.58	+2.9