Experiment: McCas_formate_complete no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04310 and MMJJ_RS04315 are separated by 330 nucleotides MMJJ_RS04315 and MMJJ_RS04325 are separated by 912 nucleotides
MMJJ_RS04310: MMJJ_RS04310 - hypothetical protein, at 804,987 to 806,012
_RS04310
MMJJ_RS04315: MMJJ_RS04315 - alpha/beta hydrolase, at 806,343 to 807,047
_RS04315
MMJJ_RS04325: MMJJ_RS04325 - tyrosine-type recombinase/integrase, at 807,960 to 808,928
_RS04325
Position (kb) 806
807
808 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 805.345 kb on + strand, within MMJJ_RS04310 at 805.394 kb on - strand, within MMJJ_RS04310 at 805.395 kb on + strand, within MMJJ_RS04310 at 805.395 kb on + strand, within MMJJ_RS04310 at 805.395 kb on + strand, within MMJJ_RS04310 at 805.416 kb on - strand, within MMJJ_RS04310 at 805.417 kb on + strand, within MMJJ_RS04310 at 805.442 kb on - strand, within MMJJ_RS04310 at 805.469 kb on - strand, within MMJJ_RS04310 at 805.488 kb on - strand, within MMJJ_RS04310 at 805.488 kb on - strand, within MMJJ_RS04310 at 805.488 kb on - strand, within MMJJ_RS04310 at 805.488 kb on - strand, within MMJJ_RS04310 at 805.489 kb on + strand, within MMJJ_RS04310 at 805.489 kb on + strand, within MMJJ_RS04310 at 805.489 kb on + strand, within MMJJ_RS04310 at 805.489 kb on + strand, within MMJJ_RS04310 at 805.489 kb on + strand, within MMJJ_RS04310 at 805.491 kb on - strand, within MMJJ_RS04310 at 805.492 kb on + strand, within MMJJ_RS04310 at 805.492 kb on + strand, within MMJJ_RS04310 at 805.501 kb on - strand, within MMJJ_RS04310 at 805.501 kb on - strand, within MMJJ_RS04310 at 805.501 kb on - strand, within MMJJ_RS04310 at 805.501 kb on - strand, within MMJJ_RS04310 at 805.502 kb on + strand, within MMJJ_RS04310 at 805.538 kb on - strand, within MMJJ_RS04310 at 805.539 kb on + strand, within MMJJ_RS04310 at 805.540 kb on - strand, within MMJJ_RS04310 at 805.541 kb on + strand, within MMJJ_RS04310 at 805.541 kb on + strand, within MMJJ_RS04310 at 805.541 kb on + strand, within MMJJ_RS04310 at 805.541 kb on + strand, within MMJJ_RS04310 at 805.550 kb on + strand, within MMJJ_RS04310 at 805.567 kb on - strand, within MMJJ_RS04310 at 805.593 kb on - strand, within MMJJ_RS04310 at 805.593 kb on - strand, within MMJJ_RS04310 at 805.593 kb on - strand, within MMJJ_RS04310 at 805.594 kb on + strand, within MMJJ_RS04310 at 805.594 kb on + strand, within MMJJ_RS04310 at 805.613 kb on - strand, within MMJJ_RS04310 at 805.614 kb on + strand, within MMJJ_RS04310 at 805.621 kb on + strand, within MMJJ_RS04310 at 805.637 kb on - strand, within MMJJ_RS04310 at 805.637 kb on - strand, within MMJJ_RS04310 at 805.638 kb on + strand, within MMJJ_RS04310 at 805.638 kb on + strand, within MMJJ_RS04310 at 805.638 kb on + strand, within MMJJ_RS04310 at 805.638 kb on + strand, within MMJJ_RS04310 at 805.638 kb on + strand, within MMJJ_RS04310 at 805.641 kb on - strand, within MMJJ_RS04310 at 805.642 kb on + strand, within MMJJ_RS04310 at 805.652 kb on - strand, within MMJJ_RS04310 at 805.653 kb on + strand, within MMJJ_RS04310 at 805.653 kb on + strand, within MMJJ_RS04310 at 805.656 kb on - strand, within MMJJ_RS04310 at 805.656 kb on - strand, within MMJJ_RS04310 at 805.684 kb on - strand, within MMJJ_RS04310 at 805.684 kb on - strand, within MMJJ_RS04310 at 805.754 kb on - strand, within MMJJ_RS04310 at 805.769 kb on - strand, within MMJJ_RS04310 at 805.769 kb on - strand, within MMJJ_RS04310 at 805.770 kb on + strand, within MMJJ_RS04310 at 805.770 kb on + strand, within MMJJ_RS04310 at 805.771 kb on - strand, within MMJJ_RS04310 at 805.787 kb on - strand, within MMJJ_RS04310 at 805.809 kb on - strand, within MMJJ_RS04310 at 805.810 kb on + strand, within MMJJ_RS04310 at 805.818 kb on - strand, within MMJJ_RS04310 at 805.818 kb on - strand, within MMJJ_RS04310 at 805.819 kb on + strand, within MMJJ_RS04310 at 805.851 kb on - strand, within MMJJ_RS04310 at 805.851 kb on - strand, within MMJJ_RS04310 at 805.852 kb on + strand, within MMJJ_RS04310 at 805.852 kb on + strand, within MMJJ_RS04310 at 805.859 kb on + strand, within MMJJ_RS04310 at 805.867 kb on - strand, within MMJJ_RS04310 at 805.874 kb on - strand, within MMJJ_RS04310 at 805.874 kb on - strand, within MMJJ_RS04310 at 805.874 kb on - strand, within MMJJ_RS04310 at 805.874 kb on - strand, within MMJJ_RS04310 at 806.051 kb on + strand at 806.104 kb on - strand at 806.112 kb on - strand at 806.118 kb on - strand at 806.134 kb on - strand at 806.199 kb on - strand at 806.217 kb on - strand at 806.223 kb on - strand at 806.223 kb on - strand at 806.223 kb on - strand at 806.223 kb on - strand at 806.223 kb on - strand at 806.223 kb on - strand at 806.224 kb on + strand at 806.224 kb on + strand at 806.224 kb on + strand at 806.226 kb on + strand at 806.226 kb on + strand at 806.228 kb on - strand at 806.228 kb on - strand at 806.228 kb on - strand at 806.228 kb on - strand at 806.228 kb on - strand at 806.228 kb on - strand at 806.229 kb on + strand at 806.229 kb on + strand at 806.232 kb on - strand at 806.232 kb on - strand at 806.233 kb on + strand at 806.235 kb on - strand at 806.236 kb on + strand at 806.236 kb on + strand at 806.236 kb on + strand at 806.236 kb on + strand at 806.239 kb on + strand at 806.239 kb on + strand at 806.239 kb on + strand at 806.270 kb on - strand at 806.271 kb on + strand at 806.271 kb on + strand at 806.277 kb on - strand at 806.278 kb on + strand at 806.321 kb on - strand at 806.324 kb on - strand at 806.515 kb on - strand, within MMJJ_RS04315 at 806.598 kb on - strand, within MMJJ_RS04315 at 806.599 kb on + strand, within MMJJ_RS04315 at 806.623 kb on - strand, within MMJJ_RS04315 at 806.624 kb on + strand, within MMJJ_RS04315 at 806.643 kb on + strand, within MMJJ_RS04315 at 806.652 kb on - strand, within MMJJ_RS04315 at 806.653 kb on + strand, within MMJJ_RS04315 at 806.653 kb on + strand, within MMJJ_RS04315 at 806.699 kb on + strand, within MMJJ_RS04315 at 806.705 kb on + strand, within MMJJ_RS04315 at 806.761 kb on - strand, within MMJJ_RS04315 at 806.761 kb on - strand, within MMJJ_RS04315 at 806.762 kb on + strand, within MMJJ_RS04315 at 806.762 kb on + strand, within MMJJ_RS04315 at 806.776 kb on - strand, within MMJJ_RS04315 at 806.777 kb on + strand, within MMJJ_RS04315 at 806.818 kb on - strand, within MMJJ_RS04315 at 806.818 kb on - strand, within MMJJ_RS04315 at 806.818 kb on - strand, within MMJJ_RS04315 at 806.818 kb on - strand, within MMJJ_RS04315 at 806.818 kb on - strand, within MMJJ_RS04315 at 806.819 kb on + strand, within MMJJ_RS04315 at 806.819 kb on + strand, within MMJJ_RS04315 at 806.819 kb on + strand, within MMJJ_RS04315 at 806.819 kb on + strand, within MMJJ_RS04315 at 806.819 kb on + strand, within MMJJ_RS04315 at 806.820 kb on - strand, within MMJJ_RS04315 at 806.821 kb on + strand, within MMJJ_RS04315 at 806.830 kb on + strand, within MMJJ_RS04315 at 806.838 kb on - strand, within MMJJ_RS04315 at 806.839 kb on + strand, within MMJJ_RS04315 at 806.839 kb on + strand, within MMJJ_RS04315 at 806.842 kb on - strand, within MMJJ_RS04315 at 806.842 kb on - strand, within MMJJ_RS04315 at 806.843 kb on + strand, within MMJJ_RS04315 at 806.843 kb on + strand at 806.882 kb on - strand, within MMJJ_RS04315 at 806.883 kb on + strand, within MMJJ_RS04315 at 806.897 kb on - strand, within MMJJ_RS04315 at 806.908 kb on - strand, within MMJJ_RS04315 at 806.908 kb on - strand, within MMJJ_RS04315 at 806.909 kb on + strand, within MMJJ_RS04315 at 806.916 kb on - strand, within MMJJ_RS04315 at 806.921 kb on - strand, within MMJJ_RS04315 at 806.921 kb on - strand, within MMJJ_RS04315 at 806.922 kb on + strand, within MMJJ_RS04315 at 806.931 kb on + strand, within MMJJ_RS04315 at 806.948 kb on - strand, within MMJJ_RS04315 at 806.948 kb on - strand, within MMJJ_RS04315 at 806.948 kb on - strand, within MMJJ_RS04315 at 806.948 kb on - strand, within MMJJ_RS04315 at 806.949 kb on + strand, within MMJJ_RS04315 at 806.954 kb on - strand, within MMJJ_RS04315 at 806.954 kb on - strand, within MMJJ_RS04315 at 806.955 kb on + strand, within MMJJ_RS04315 at 806.955 kb on + strand, within MMJJ_RS04315 at 806.955 kb on + strand, within MMJJ_RS04315 at 806.968 kb on - strand, within MMJJ_RS04315 at 806.969 kb on + strand, within MMJJ_RS04315 at 806.985 kb on - strand at 806.986 kb on + strand at 807.008 kb on + strand at 807.008 kb on + strand at 807.074 kb on + strand at 807.090 kb on + strand at 807.103 kb on - strand at 807.103 kb on - strand at 807.200 kb on + strand at 807.206 kb on + strand at 807.239 kb on + strand at 807.274 kb on - strand at 807.315 kb on - strand at 807.315 kb on - strand at 807.371 kb on + strand at 807.541 kb on + strand at 807.541 kb on + strand at 807.541 kb on + strand at 807.570 kb on - strand at 807.580 kb on - strand at 807.580 kb on - strand at 807.895 kb on - strand at 807.984 kb on - strand at 808.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete no stress control remove 805,345 + MMJJ_RS04310 0.35 -0.2 805,394 - MMJJ_RS04310 0.40 -0.8 805,395 + MMJJ_RS04310 0.40 -1.2 805,395 + MMJJ_RS04310 0.40 +2.0 805,395 + MMJJ_RS04310 0.40 +0.3 805,416 - MMJJ_RS04310 0.42 -0.6 805,417 + MMJJ_RS04310 0.42 +1.4 805,442 - MMJJ_RS04310 0.44 -1.0 805,469 - MMJJ_RS04310 0.47 +1.3 805,488 - MMJJ_RS04310 0.49 -0.3 805,488 - MMJJ_RS04310 0.49 -0.5 805,488 - MMJJ_RS04310 0.49 -0.7 805,488 - MMJJ_RS04310 0.49 +0.5 805,489 + MMJJ_RS04310 0.49 +2.1 805,489 + MMJJ_RS04310 0.49 +1.2 805,489 + MMJJ_RS04310 0.49 +2.5 805,489 + MMJJ_RS04310 0.49 -0.8 805,489 + MMJJ_RS04310 0.49 -2.1 805,491 - MMJJ_RS04310 0.49 -0.9 805,492 + MMJJ_RS04310 0.49 -0.8 805,492 + MMJJ_RS04310 0.49 +2.2 805,501 - MMJJ_RS04310 0.50 +0.6 805,501 - MMJJ_RS04310 0.50 +1.9 805,501 - MMJJ_RS04310 0.50 -1.2 805,501 - MMJJ_RS04310 0.50 -1.4 805,502 + MMJJ_RS04310 0.50 +2.5 805,538 - MMJJ_RS04310 0.54 +1.6 805,539 + MMJJ_RS04310 0.54 -1.2 805,540 - MMJJ_RS04310 0.54 +1.1 805,541 + MMJJ_RS04310 0.54 -1.1 805,541 + MMJJ_RS04310 0.54 +1.5 805,541 + MMJJ_RS04310 0.54 -0.4 805,541 + MMJJ_RS04310 0.54 -2.3 805,550 + MMJJ_RS04310 0.55 -0.3 805,567 - MMJJ_RS04310 0.57 -0.2 805,593 - MMJJ_RS04310 0.59 +0.2 805,593 - MMJJ_RS04310 0.59 +1.6 805,593 - MMJJ_RS04310 0.59 -1.6 805,594 + MMJJ_RS04310 0.59 -0.2 805,594 + MMJJ_RS04310 0.59 -1.5 805,613 - MMJJ_RS04310 0.61 +2.1 805,614 + MMJJ_RS04310 0.61 +0.1 805,621 + MMJJ_RS04310 0.62 +0.6 805,637 - MMJJ_RS04310 0.63 +1.2 805,637 - MMJJ_RS04310 0.63 -0.0 805,638 + MMJJ_RS04310 0.63 +1.8 805,638 + MMJJ_RS04310 0.63 -2.5 805,638 + MMJJ_RS04310 0.63 -2.3 805,638 + MMJJ_RS04310 0.63 -4.1 805,638 + MMJJ_RS04310 0.63 +0.1 805,641 - MMJJ_RS04310 0.64 -0.7 805,642 + MMJJ_RS04310 0.64 +1.2 805,652 - MMJJ_RS04310 0.65 -0.6 805,653 + MMJJ_RS04310 0.65 +0.9 805,653 + MMJJ_RS04310 0.65 +1.3 805,656 - MMJJ_RS04310 0.65 +0.6 805,656 - MMJJ_RS04310 0.65 -0.2 805,684 - MMJJ_RS04310 0.68 +1.6 805,684 - MMJJ_RS04310 0.68 -0.2 805,754 - MMJJ_RS04310 0.75 -1.4 805,769 - MMJJ_RS04310 0.76 +1.6 805,769 - MMJJ_RS04310 0.76 +1.4 805,770 + MMJJ_RS04310 0.76 -4.1 805,770 + MMJJ_RS04310 0.76 +0.2 805,771 - MMJJ_RS04310 0.76 +0.1 805,787 - MMJJ_RS04310 0.78 +0.3 805,809 - MMJJ_RS04310 0.80 -1.8 805,810 + MMJJ_RS04310 0.80 -0.3 805,818 - MMJJ_RS04310 0.81 +0.7 805,818 - MMJJ_RS04310 0.81 -1.8 805,819 + MMJJ_RS04310 0.81 +3.4 805,851 - MMJJ_RS04310 0.84 -0.8 805,851 - MMJJ_RS04310 0.84 -2.4 805,852 + MMJJ_RS04310 0.84 +0.2 805,852 + MMJJ_RS04310 0.84 +0.4 805,859 + MMJJ_RS04310 0.85 -3.8 805,867 - MMJJ_RS04310 0.86 +1.5 805,874 - MMJJ_RS04310 0.86 -0.7 805,874 - MMJJ_RS04310 0.86 +0.7 805,874 - MMJJ_RS04310 0.86 +0.9 805,874 - MMJJ_RS04310 0.86 +1.2 806,051 + -0.1 806,104 - +1.7 806,112 - +0.8 806,118 - -0.3 806,134 - +0.7 806,199 - -2.5 806,217 - -1.5 806,223 - +1.7 806,223 - -0.5 806,223 - -1.0 806,223 - +0.9 806,223 - -2.6 806,223 - +2.4 806,224 + +1.5 806,224 + +0.4 806,224 + +1.4 806,226 + -0.6 806,226 + -0.4 806,228 - -0.3 806,228 - -0.3 806,228 - +0.2 806,228 - -1.5 806,228 - +0.7 806,228 - +1.0 806,229 + +1.5 806,229 + -1.0 806,232 - +0.3 806,232 - -0.5 806,233 + +0.5 806,235 - +4.0 806,236 + +1.3 806,236 + +2.3 806,236 + +1.2 806,236 + -1.3 806,239 + -0.3 806,239 + +1.9 806,239 + +1.1 806,270 - -0.0 806,271 + -0.0 806,271 + -0.2 806,277 - +2.9 806,278 + -1.3 806,321 - +0.4 806,324 - -2.7 806,515 - MMJJ_RS04315 0.24 -0.5 806,598 - MMJJ_RS04315 0.36 +0.7 806,599 + MMJJ_RS04315 0.36 -3.2 806,623 - MMJJ_RS04315 0.40 -1.3 806,624 + MMJJ_RS04315 0.40 +0.6 806,643 + MMJJ_RS04315 0.43 +0.7 806,652 - MMJJ_RS04315 0.44 +0.7 806,653 + MMJJ_RS04315 0.44 -0.3 806,653 + MMJJ_RS04315 0.44 +4.7 806,699 + MMJJ_RS04315 0.50 -1.4 806,705 + MMJJ_RS04315 0.51 +0.7 806,761 - MMJJ_RS04315 0.59 +1.0 806,761 - MMJJ_RS04315 0.59 +0.9 806,762 + MMJJ_RS04315 0.59 -0.6 806,762 + MMJJ_RS04315 0.59 -1.0 806,776 - MMJJ_RS04315 0.61 -1.1 806,777 + MMJJ_RS04315 0.62 +0.4 806,818 - MMJJ_RS04315 0.67 +1.2 806,818 - MMJJ_RS04315 0.67 -1.4 806,818 - MMJJ_RS04315 0.67 +0.2 806,818 - MMJJ_RS04315 0.67 +1.8 806,818 - MMJJ_RS04315 0.67 +1.1 806,819 + MMJJ_RS04315 0.68 +0.2 806,819 + MMJJ_RS04315 0.68 +2.0 806,819 + MMJJ_RS04315 0.68 +0.0 806,819 + MMJJ_RS04315 0.68 -1.8 806,819 + MMJJ_RS04315 0.68 -0.0 806,820 - MMJJ_RS04315 0.68 +0.3 806,821 + MMJJ_RS04315 0.68 -0.9 806,830 + MMJJ_RS04315 0.69 +0.8 806,838 - MMJJ_RS04315 0.70 -0.3 806,839 + MMJJ_RS04315 0.70 -0.1 806,839 + MMJJ_RS04315 0.70 +0.2 806,842 - MMJJ_RS04315 0.71 +1.4 806,842 - MMJJ_RS04315 0.71 -1.0 806,843 + MMJJ_RS04315 0.71 +1.5 806,843 + +4.3 806,882 - MMJJ_RS04315 0.76 -0.2 806,883 + MMJJ_RS04315 0.77 -4.0 806,897 - MMJJ_RS04315 0.79 +1.6 806,908 - MMJJ_RS04315 0.80 +1.2 806,908 - MMJJ_RS04315 0.80 -0.3 806,909 + MMJJ_RS04315 0.80 -0.5 806,916 - MMJJ_RS04315 0.81 -0.9 806,921 - MMJJ_RS04315 0.82 -2.0 806,921 - MMJJ_RS04315 0.82 -2.2 806,922 + MMJJ_RS04315 0.82 +0.5 806,931 + MMJJ_RS04315 0.83 +2.2 806,948 - MMJJ_RS04315 0.86 +0.8 806,948 - MMJJ_RS04315 0.86 +0.1 806,948 - MMJJ_RS04315 0.86 -0.6 806,948 - MMJJ_RS04315 0.86 -2.4 806,949 + MMJJ_RS04315 0.86 +0.9 806,954 - MMJJ_RS04315 0.87 -0.9 806,954 - MMJJ_RS04315 0.87 +1.8 806,955 + MMJJ_RS04315 0.87 +0.4 806,955 + MMJJ_RS04315 0.87 -2.5 806,955 + MMJJ_RS04315 0.87 -0.7 806,968 - MMJJ_RS04315 0.89 +1.0 806,969 + MMJJ_RS04315 0.89 +0.9 806,985 - -1.4 806,986 + +0.3 807,008 + +0.8 807,008 + +2.3 807,074 + -1.3 807,090 + +1.4 807,103 - +1.3 807,103 - +1.8 807,200 + +0.1 807,206 + -0.6 807,239 + +0.1 807,274 - -0.6 807,315 - -0.3 807,315 - +0.1 807,371 + +0.5 807,541 + +2.4 807,541 + -1.3 807,541 + +1.4 807,570 - -1.1 807,580 - +1.3 807,580 - +0.8 807,895 - +0.2 807,984 - +0.3 808,018 - -0.2
Or see this region's nucleotide sequence