Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08500

Experiment: McCas_formate_complete 3-nitroxypropanol 0.00078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete 3-nitroxypropanol 0.00078125 mM
1,562,909	-		MMJJ_RS08495	0.28	+0.3
1,562,915	+		MMJJ_RS08495	0.29	-1.8
1,562,935	-		MMJJ_RS08495	0.30	+0.8
1,562,978	-		MMJJ_RS08495	0.34	-1.0
1,562,993	-		MMJJ_RS08495	0.35	+0.9
1,562,993	-		MMJJ_RS08495	0.35	-0.1
1,562,994	+		MMJJ_RS08495	0.35	-3.3
1,563,003	-		MMJJ_RS08495	0.36	-0.8
1,563,004	+		MMJJ_RS08495	0.36	+0.3
1,563,042	+		MMJJ_RS08495	0.39	-2.4
1,563,052	-		MMJJ_RS08495	0.40	-1.9
1,563,115	-		MMJJ_RS08495	0.45	-1.3
1,563,139	+				+0.9
1,563,171	-		MMJJ_RS08495	0.50	-1.3
1,563,171	-		MMJJ_RS08495	0.50	-1.4
1,563,172	+		MMJJ_RS08495	0.50	-1.3
1,563,172	+		MMJJ_RS08495	0.50	-2.1
1,563,172	+		MMJJ_RS08495	0.50	-1.9
1,563,172	+		MMJJ_RS08495	0.50	-2.3
1,563,176	+		MMJJ_RS08495	0.50	+1.5
1,563,207	-		MMJJ_RS08495	0.53	+2.9
1,563,214	+		MMJJ_RS08495	0.53	-0.4
1,563,303	+		MMJJ_RS08495	0.61	-0.4
1,563,309	-		MMJJ_RS08495	0.61	-1.7
1,563,309	-		MMJJ_RS08495	0.61	-0.1
1,563,310	+		MMJJ_RS08495	0.61	-0.7
1,563,354	-		MMJJ_RS08495	0.65	-0.9
1,563,354	-		MMJJ_RS08495	0.65	-0.4
1,563,355	+		MMJJ_RS08495	0.65	+0.0
1,563,395	+		MMJJ_RS08495	0.68	+0.2
1,563,402	-		MMJJ_RS08495	0.69	-3.6
1,563,467	-		MMJJ_RS08495	0.74	-1.3
1,563,467	-		MMJJ_RS08495	0.74	-0.2
1,563,468	+		MMJJ_RS08495	0.74	-1.4
1,563,496	+		MMJJ_RS08495	0.76	-2.2
1,563,517	+		MMJJ_RS08495	0.78	-1.8
1,563,547	-		MMJJ_RS08495	0.81	-0.3
1,563,547	-		MMJJ_RS08495	0.81	-0.2
1,563,548	+		MMJJ_RS08495	0.81	-1.1
1,563,592	+		MMJJ_RS08495	0.84	-1.9
1,563,628	-		MMJJ_RS08495	0.87	-1.2
1,563,628	-		MMJJ_RS08495	0.87	-1.5
1,563,628	-		MMJJ_RS08495	0.87	+0.2
1,563,628	-		MMJJ_RS08495	0.87	-1.8
1,563,628	-		MMJJ_RS08495	0.87	-2.1
1,563,628	-		MMJJ_RS08495	0.87	+0.3
1,563,629	+		MMJJ_RS08495	0.87	-2.6
1,563,629	+		MMJJ_RS08495	0.87	+1.4
1,563,629	+		MMJJ_RS08495	0.87	-3.2
1,563,629	+		MMJJ_RS08495	0.87	+1.2
1,563,629	+				+0.9
1,563,629	+		MMJJ_RS08495	0.87	+1.5
1,563,629	+		MMJJ_RS08495	0.87	-1.3
1,563,629	+		MMJJ_RS08495	0.87	-2.8
1,563,664	-				+0.0
1,563,671	-				-1.0
1,563,672	+				+1.7
1,563,679	+				-1.0
1,563,679	+				-1.4
1,563,680	-				+0.4
1,563,680	-				-0.4
1,563,680	-				-1.7
1,563,680	-				-1.9
1,563,680	-				-0.0
1,563,681	+				-2.7
1,563,681	+				-0.5
1,563,681	+				+0.2
1,563,681	+				-2.1
1,563,681	+				+0.4
1,563,684	-				-0.5
1,563,684	-				+2.5
1,563,684	-				+0.6
1,563,685	+				+0.5
1,563,685	+				-1.8
1,563,685	+				+1.9
1,563,685	+				-0.3
1,563,694	-				-0.2
1,563,695	+				+0.1
1,563,699	-				+1.2
1,563,699	-				-0.8
1,563,699	-				+0.6
1,563,699	-				+1.0
1,563,700	+				-3.0
1,563,700	+				-0.2
1,563,700	+				-0.7
1,563,700	+				-0.6
1,563,710	-				-2.0
1,563,711	+				-1.1
1,563,711	+				+0.4
1,563,731	-				-1.4
1,563,732	+				+1.1
1,563,819	-				-1.0
1,563,825	-				-3.3
1,563,830	-				+1.3
1,563,830	-				-1.2
1,563,831	+				-1.0
1,563,831	+				-4.4
1,563,831	+				-1.6
1,563,831	+				-1.6
1,563,831	+				+2.7
1,563,848	-				-0.7
1,563,848	-				-0.6
1,563,852	-				-1.0
1,563,852	-				-0.2
1,563,852	-				-3.8
1,563,853	+				+2.0
1,563,854	-				+0.5
1,563,857	+				+0.6
1,563,874	-				+1.1
1,563,877	-				-0.1
1,563,877	-				+0.5
1,563,908	+				-2.3
1,563,916	-				-2.8
1,563,968	+				-1.7
1,563,968	+				-2.4
1,563,972	-				-1.1
1,563,972	-				-3.4
1,563,972	-				-1.8
1,563,973	+				-3.3
1,563,973	+				-2.0
1,564,062	-		MMJJ_RS08500	0.15	-3.4
1,564,063	+		MMJJ_RS08500	0.15	-3.2
1,564,089	-		MMJJ_RS08500	0.18	-2.4
1,564,104	+		MMJJ_RS08500	0.19	-3.9
1,564,143	-		MMJJ_RS08500	0.23	-3.0
1,564,144	+		MMJJ_RS08500	0.23	-0.8
1,564,200	-		MMJJ_RS08500	0.28	-0.9
1,564,271	-		MMJJ_RS08500	0.35	-1.1
1,564,287	-		MMJJ_RS08500	0.36	-3.7
1,564,328	-		MMJJ_RS08500	0.40	-1.5
1,564,344	-		MMJJ_RS08500	0.42	-1.0
1,564,345	+		MMJJ_RS08500	0.42	-3.7
1,564,435	-		MMJJ_RS08500	0.51	-2.8
1,564,679	-		MMJJ_RS08500	0.74	-2.0
1,564,680	+		MMJJ_RS08500	0.74	-1.9
1,564,860	+				+0.6
1,564,862	-				+0.7
1,564,863	+				-1.1
1,564,888	-				-4.1
1,564,889	+				+2.5
1,564,889	+				-2.1
1,564,934	-				-3.7
1,564,938	-				-2.4
1,564,938	-				-1.1
1,564,938	-				-1.4
1,564,938	-				-3.1
1,564,938	-				-0.6
1,564,939	+				+0.1
1,564,939	+				-1.9
1,564,939	+				-1.6
1,564,939	+				-1.3
1,564,939	+				-1.6
1,564,939	+				-3.3
1,564,940	-				-1.4
1,564,940	-				-1.8
1,564,941	+				-2.6
1,564,941	+				+0.2
1,564,941	+				-4.1
1,564,941	+				-3.5
1,564,965	+				-1.4
1,565,230	+		MMJJ_RS08505	0.49	-2.6
1,565,282	-		MMJJ_RS08505	0.59	-0.7
1,565,423	-		MMJJ_RS08505	0.85	-0.1
1,565,501	+				-0.4
1,565,519	-				-0.9
1,565,544	-				+0.3
1,565,544	-				+0.6
1,565,544	-				-1.4
1,565,544	-				-0.7
1,565,544	-				-0.1
1,565,544	-				-0.5
1,565,545	+				-3.3
1,565,545	+				-1.8
1,565,545	+				-0.6
1,565,545	+				+1.9
1,565,545	+				-1.1
1,565,545	+				-1.3
1,565,548	-				-0.4
1,565,548	-				-1.9
1,565,549	+				-1.8
1,565,549	+				-0.6
1,565,549	+				-0.4
1,565,551	-				-0.3
1,565,551	-				-2.0
1,565,552	+				-0.6
1,565,553	-				-0.8
1,565,553	-				-0.7
1,565,554	+				-0.6
1,565,554	+				-0.0
1,565,554	+				-0.1
1,565,555	-				-1.1
1,565,555	-				-1.4
1,565,555	-				-3.6
1,565,556	+				+0.0
1,565,556	+				+0.3
1,565,556	+				-1.3
1,565,556	+				-0.1
1,565,556	+				-0.4
1,565,572	-				-2.7
1,565,575	+				-0.7