Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08300

Experiment: McCas_formate_complete 3-nitroxypropanol 0.00078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete 3-nitroxypropanol 0.00078125 mM
1,529,381	-		MMJJ_RS08295	0.23	+0.1
1,529,382	+		MMJJ_RS08295	0.23	+0.0
1,529,399	-		MMJJ_RS08295	0.24	-1.6
1,529,420	-		MMJJ_RS08295	0.26	+0.3
1,529,421	+		MMJJ_RS08295	0.26	-1.3
1,529,549	-		MMJJ_RS08295	0.38	+1.0
1,529,553	-		MMJJ_RS08295	0.38	+0.6
1,529,602	-		MMJJ_RS08295	0.42	-0.1
1,529,606	-		MMJJ_RS08295	0.43	+1.7
1,529,606	-		MMJJ_RS08295	0.43	-0.2
1,529,606	-		MMJJ_RS08295	0.43	-1.6
1,529,606	-		MMJJ_RS08295	0.43	-0.0
1,529,606	-		MMJJ_RS08295	0.43	+0.5
1,529,606	-		MMJJ_RS08295	0.43	+1.2
1,529,650	-		MMJJ_RS08295	0.47	-1.8
1,529,729	+		MMJJ_RS08295	0.54	-0.9
1,529,769	-		MMJJ_RS08295	0.57	+2.6
1,529,769	-		MMJJ_RS08295	0.57	-0.8
1,529,770	+		MMJJ_RS08295	0.57	-0.7
1,529,770	+		MMJJ_RS08295	0.57	+0.0
1,529,781	+		MMJJ_RS08295	0.58	-0.0
1,529,786	+		MMJJ_RS08295	0.59	-0.3
1,529,788	-		MMJJ_RS08295	0.59	-0.3
1,529,789	+		MMJJ_RS08295	0.59	+2.3
1,529,791	-		MMJJ_RS08295	0.59	+0.2
1,529,791	-		MMJJ_RS08295	0.59	-1.0
1,529,792	+		MMJJ_RS08295	0.59	-0.3
1,529,792	+		MMJJ_RS08295	0.59	+0.1
1,529,792	+		MMJJ_RS08295	0.59	-1.5
1,529,792	+		MMJJ_RS08295	0.59	-1.1
1,529,792	+		MMJJ_RS08295	0.59	-1.5
1,529,807	-		MMJJ_RS08295	0.61	+0.1
1,529,833	+		MMJJ_RS08295	0.63	+0.1
1,529,833	+		MMJJ_RS08295	0.63	-1.3
1,529,846	-		MMJJ_RS08295	0.64	+3.2
1,529,846	-		MMJJ_RS08295	0.64	+0.1
1,529,846	-		MMJJ_RS08295	0.64	-2.0
1,529,846	-		MMJJ_RS08295	0.64	+0.0
1,529,846	-		MMJJ_RS08295	0.64	-0.9
1,529,846	-		MMJJ_RS08295	0.64	+1.4
1,529,846	-		MMJJ_RS08295	0.64	-1.6
1,529,847	+		MMJJ_RS08295	0.64	+1.0
1,529,847	+		MMJJ_RS08295	0.64	+1.3
1,529,847	+		MMJJ_RS08295	0.64	+2.8
1,529,850	-		MMJJ_RS08295	0.64	-0.6
1,529,851	+		MMJJ_RS08295	0.65	-0.9
1,529,854	-				+1.9
1,529,854	-		MMJJ_RS08295	0.65	+0.4
1,529,855	+		MMJJ_RS08295	0.65	-0.2
1,529,855	+		MMJJ_RS08295	0.65	-0.5
1,529,855	+		MMJJ_RS08295	0.65	-1.0
1,529,855	+		MMJJ_RS08295	0.65	+1.2
1,529,858	+		MMJJ_RS08295	0.65	+2.1
1,529,859	-		MMJJ_RS08295	0.65	-0.5
1,529,859	-		MMJJ_RS08295	0.65	+2.1
1,529,860	+		MMJJ_RS08295	0.65	-2.1
1,529,878	-		MMJJ_RS08295	0.67	+0.7
1,529,878	-		MMJJ_RS08295	0.67	+0.1
1,529,878	-		MMJJ_RS08295	0.67	+0.8
1,529,878	-		MMJJ_RS08295	0.67	-2.4
1,529,879	+		MMJJ_RS08295	0.67	+0.1
1,529,879	+		MMJJ_RS08295	0.67	+2.2
1,529,879	+		MMJJ_RS08295	0.67	-1.7
1,529,879	+		MMJJ_RS08295	0.67	+0.6
1,529,938	+		MMJJ_RS08295	0.72	-0.7
1,529,992	+		MMJJ_RS08295	0.77	+0.7
1,530,005	+		MMJJ_RS08295	0.78	-1.2
1,530,045	-		MMJJ_RS08295	0.82	+0.2
1,530,049	-		MMJJ_RS08295	0.82	-0.2
1,530,177	-				+0.0
1,530,230	+				+3.3
1,530,341	-				+0.6
1,530,341	-				-1.4
1,530,381	-				+1.7
1,530,441	+				-0.7
1,530,467	-				-0.7
1,530,501	-		MMJJ_RS08300	0.11	+1.1
1,530,501	-		MMJJ_RS08300	0.11	+0.1
1,530,515	+		MMJJ_RS08300	0.12	+1.4
1,530,533	+		MMJJ_RS08300	0.14	+1.3
1,530,535	+		MMJJ_RS08300	0.14	-0.7
1,530,539	-		MMJJ_RS08300	0.15	-1.7
1,530,539	-		MMJJ_RS08300	0.15	+0.9
1,530,540	+		MMJJ_RS08300	0.15	-0.7
1,530,540	+		MMJJ_RS08300	0.15	-0.1
1,530,540	+		MMJJ_RS08300	0.15	+1.3
1,530,541	-		MMJJ_RS08300	0.15	+0.1
1,530,541	-		MMJJ_RS08300	0.15	+1.1
1,530,542	+		MMJJ_RS08300	0.15	-1.5
1,530,542	+				+0.9
1,530,542	+		MMJJ_RS08300	0.15	-0.8
1,530,542	+		MMJJ_RS08300	0.15	-1.1
1,530,593	-		MMJJ_RS08300	0.20	+1.0
1,530,647	-		MMJJ_RS08300	0.25	-2.0
1,530,648	+		MMJJ_RS08300	0.25	-0.1
1,530,648	+		MMJJ_RS08300	0.25	+0.9
1,530,659	+		MMJJ_RS08300	0.26	-0.4
1,530,672	-		MMJJ_RS08300	0.27	+0.5
1,530,778	-		MMJJ_RS08300	0.37	+0.2
1,530,830	+		MMJJ_RS08300	0.42	+0.4
1,530,961	-		MMJJ_RS08300	0.54	+0.5
1,530,961	-		MMJJ_RS08300	0.54	-1.4
1,530,961	-		MMJJ_RS08300	0.54	-0.9
1,530,962	+		MMJJ_RS08300	0.54	-2.6
1,530,964	+		MMJJ_RS08300	0.54	+1.3
1,530,964	+		MMJJ_RS08300	0.54	-3.2
1,531,016	+		MMJJ_RS08300	0.59	-1.3
1,531,020	+		MMJJ_RS08300	0.59	+0.3
1,531,140	+		MMJJ_RS08300	0.70	-1.4
1,531,140	+		MMJJ_RS08300	0.70	+0.3
1,531,140	+		MMJJ_RS08300	0.70	+0.4
1,531,158	-		MMJJ_RS08300	0.72	-0.2
1,531,163	+		MMJJ_RS08300	0.72	+3.2
1,531,185	-		MMJJ_RS08300	0.74	+0.7
1,531,186	+		MMJJ_RS08300	0.74	+0.5
1,531,186	+		MMJJ_RS08300	0.74	-0.8
1,531,220	+		MMJJ_RS08300	0.78	-0.3
1,531,260	+		MMJJ_RS08300	0.81	+1.9
1,531,289	-		MMJJ_RS08300	0.84	-0.5
1,531,321	+		MMJJ_RS08300	0.87	-1.0
1,531,321	+		MMJJ_RS08300	0.87	+0.4
1,531,329	+		MMJJ_RS08300	0.88	+1.3
1,531,356	+				-0.1
1,531,380	-				+0.3
1,531,381	+				-0.6
1,531,492	+				+2.6
1,531,498	+				+2.0
1,531,498	+				+1.0
1,531,512	-				-1.0
1,531,513	+				-0.4
1,531,513	+				-2.6
1,531,513	+				+1.5
1,531,513	+				+0.3
1,531,514	-				-0.4
1,531,516	-				-0.0
1,531,583	+				+1.7
1,531,604	-				-0.7
1,531,621	+				+2.7
1,531,623	+				+0.1
1,531,767	+		MMJJ_RS08305	0.25	-1.8
1,531,773	-		MMJJ_RS08305	0.26	-2.0
1,531,796	+		MMJJ_RS08305	0.30	-1.5
1,531,879	-		MMJJ_RS08305	0.42	-1.7
1,531,978	-		MMJJ_RS08305	0.57	-3.9
1,531,979	+		MMJJ_RS08305	0.57	-1.1
1,531,990	-		MMJJ_RS08305	0.59	-1.1
1,532,020	-		MMJJ_RS08305	0.64	-0.5
1,532,021	+		MMJJ_RS08305	0.64	-0.9
1,532,021	+		MMJJ_RS08305	0.64	-2.0
1,532,044	+		MMJJ_RS08305	0.67	+0.3
1,532,056	-		MMJJ_RS08305	0.69	+3.0
1,532,115	-		MMJJ_RS08305	0.78	-0.2
1,532,118	-		MMJJ_RS08305	0.79	-0.4
1,532,152	-		MMJJ_RS08305	0.84	-1.1
1,532,180	-		MMJJ_RS08305	0.88	-0.6
1,532,181	+		MMJJ_RS08305	0.88	-0.2
1,532,215	-				-3.7
1,532,215	-				-1.6
1,532,216	+				+0.8
1,532,218	+				+0.4
1,532,218	+				-0.9
1,532,248	-				-1.4
1,532,249	+				+0.2
1,532,260	+				-0.6
1,532,283	-				+1.7
1,532,283	-				+0.5
1,532,283	-				-1.6
1,532,284	+				+0.4
1,532,284	+				-1.2
1,532,284	+				+1.8
1,532,284	+				-1.1
1,532,284	+				+1.3
1,532,287	-				-0.4
1,532,288	+				-0.9
1,532,289	-				-0.4
1,532,290	+				-0.8
1,532,290	+				+0.0
1,532,290	+				-1.1
1,532,310	-				+1.3
1,532,311	+				-1.5
1,532,311	+				-1.6
1,532,311	+				-0.0
1,532,312	-				-2.0
1,532,313	+				+0.6
1,532,314	-				-1.2
1,532,314	-				+2.2
1,532,315	+				-0.0
1,532,315	+				+0.4
1,532,398	-				+1.0
1,532,398	-				+1.3
1,532,398	-				+0.3
1,532,398	-				+0.5
1,532,398	-				-1.3
1,532,398	-				+0.2
1,532,399	+				-1.3
1,532,399	+				+1.0
1,532,399	+				+2.1
1,532,400	-				-1.5
1,532,400	-				-0.2
1,532,400	-				-0.7
1,532,401	+				+0.2
1,532,401	+				+1.4
1,532,401	+				-1.0
1,532,401	+				-1.8
1,532,402	-				-0.2
1,532,402	-				-2.7
1,532,403	+				-1.8
1,532,403	+				+1.4
1,532,403	+				+2.1
1,532,403	+				+0.3
1,532,403	+				-0.2
1,532,413	-				-0.5
1,532,427	+				-1.3
1,532,436	-				-0.8
1,532,449	+				-0.7