Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05955

Experiment: McCas_formate_complete sulfate 125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete sulfate 125 mM
1,107,310	-		MMJJ_RS05950	0.25	+1.2
1,107,327	-		MMJJ_RS05950	0.26	+0.4
1,107,466	+		MMJJ_RS05950	0.38	+1.2
1,107,681	+		MMJJ_RS05950	0.56	+2.7
1,107,709	+		MMJJ_RS05950	0.58	+1.2
1,108,042	-		MMJJ_RS05950	0.86	+0.4
1,108,070	+		MMJJ_RS05950	0.88	-0.1
1,108,083	-		MMJJ_RS05950	0.89	+0.7
1,108,087	+		MMJJ_RS05950	0.90	-0.1
1,108,109	+				+1.2
1,108,207	+				+0.2
1,108,294	-				-0.7
1,108,300	+				-0.3
1,108,330	-		MMJJ_RS05955	0.12	-0.0
1,108,331	+		MMJJ_RS05955	0.13	-1.7
1,108,347	-		MMJJ_RS05955	0.14	+0.5
1,108,347	-		MMJJ_RS05955	0.14	-0.7
1,108,355	+		MMJJ_RS05955	0.15	-0.7
1,108,355	+		MMJJ_RS05955	0.15	-1.6
1,108,355	+		MMJJ_RS05955	0.15	+2.1
1,108,397	+		MMJJ_RS05955	0.20	-1.8
1,108,397	+		MMJJ_RS05955	0.20	+0.9
1,108,397	+		MMJJ_RS05955	0.20	-0.4
1,108,468	-		MMJJ_RS05955	0.28	-1.5
1,108,511	+		MMJJ_RS05955	0.33	-3.5
1,108,529	+		MMJJ_RS05955	0.36	+0.7
1,108,532	+		MMJJ_RS05955	0.36	-4.3
1,108,545	-		MMJJ_RS05955	0.37	+1.4
1,108,557	-		MMJJ_RS05955	0.39	-0.6
1,108,557	-		MMJJ_RS05955	0.39	+0.8
1,108,557	-		MMJJ_RS05955	0.39	+1.2
1,108,557	-		MMJJ_RS05955	0.39	-2.5
1,108,557	-		MMJJ_RS05955	0.39	-1.8
1,108,557	-		MMJJ_RS05955	0.39	-1.1
1,108,557	-		MMJJ_RS05955	0.39	+1.6
1,108,557	-		MMJJ_RS05955	0.39	-2.4
1,108,558	+		MMJJ_RS05955	0.39	+1.1
1,108,558	+		MMJJ_RS05955	0.39	-0.6
1,108,558	+		MMJJ_RS05955	0.39	-3.1
1,108,558	+		MMJJ_RS05955	0.39	+0.7
1,108,559	-		MMJJ_RS05955	0.39	+2.0
1,108,559	-		MMJJ_RS05955	0.39	-1.8
1,108,559	-		MMJJ_RS05955	0.39	-3.1
1,108,559	-		MMJJ_RS05955	0.39	+0.2
1,108,559	-		MMJJ_RS05955	0.39	-1.8
1,108,559	-		MMJJ_RS05955	0.39	-0.3
1,108,559	-		MMJJ_RS05955	0.39	-1.7
1,108,559	-		MMJJ_RS05955	0.39	-1.3
1,108,559	-		MMJJ_RS05955	0.39	-1.5
1,108,559	-		MMJJ_RS05955	0.39	+2.2
1,108,559	-		MMJJ_RS05955	0.39	+2.8
1,108,559	-		MMJJ_RS05955	0.39	+2.6
1,108,559	-		MMJJ_RS05955	0.39	+0.0
1,108,560	+		MMJJ_RS05955	0.39	+1.4
1,108,560	+		MMJJ_RS05955	0.39	-2.8
1,108,560	+		MMJJ_RS05955	0.39	-1.4
1,108,560	+		MMJJ_RS05955	0.39	-0.3
1,108,561	-		MMJJ_RS05955	0.39	-3.2
1,108,562	+		MMJJ_RS05955	0.39	+0.1
1,108,570	-		MMJJ_RS05955	0.40	-1.3
1,108,578	-		MMJJ_RS05955	0.41	-2.1
1,108,579	+		MMJJ_RS05955	0.41	-2.3
1,108,603	-		MMJJ_RS05955	0.44	+1.6
1,108,605	-		MMJJ_RS05955	0.44	+0.9
1,108,605	-		MMJJ_RS05955	0.44	+1.1
1,108,639	-		MMJJ_RS05955	0.48	+3.4
1,108,639	-		MMJJ_RS05955	0.48	-0.4
1,108,640	+		MMJJ_RS05955	0.48	+1.3
1,108,675	-		MMJJ_RS05955	0.52	-2.4
1,108,676	+		MMJJ_RS05955	0.53	+0.1
1,108,690	-		MMJJ_RS05955	0.54	+0.6
1,108,691	+		MMJJ_RS05955	0.54	-4.4
1,108,720	-		MMJJ_RS05955	0.58	-2.2
1,108,784	+		MMJJ_RS05955	0.65	-0.6
1,108,784	+		MMJJ_RS05955	0.65	-0.8
1,108,787	-		MMJJ_RS05955	0.65	-1.5
1,108,791	-		MMJJ_RS05955	0.66	+1.4
1,108,791	-		MMJJ_RS05955	0.66	-3.4
1,108,792	+		MMJJ_RS05955	0.66	-2.7
1,108,792	+		MMJJ_RS05955	0.66	+0.5
1,108,818	+		MMJJ_RS05955	0.69	-2.5
1,108,818	+		MMJJ_RS05955	0.69	+3.3
1,108,896	-		MMJJ_RS05955	0.78	+2.2
1,108,896	-		MMJJ_RS05955	0.78	+0.5
1,108,918	-		MMJJ_RS05955	0.81	+0.7
1,108,920	-		MMJJ_RS05955	0.81	-0.6
1,108,921	+		MMJJ_RS05955	0.81	+0.2
1,109,018	+				+0.6
1,109,018	+				+1.8
1,109,019	-				+2.7
1,109,027	+				+0.3
1,109,035	-				+0.7
1,109,035	-				-2.9
1,109,035	-				+1.8
1,109,077	-				-1.8
1,109,111	-				-1.1
1,109,112	+				+2.8
1,109,112	+				-0.3
1,109,112	+				+1.5
1,109,115	-				+0.3
1,109,115	-				+1.8
1,109,145	-				-3.5
1,109,145	-				-0.4
1,109,145	-				+3.6
1,109,145	-				+1.4
1,109,145	-				-1.7
1,109,145	-				-0.1
1,109,147	-				-2.1
1,109,147	-				-2.1
1,109,148	+				+0.5
1,109,148	+				+0.5
1,109,148	+				+1.7
1,109,148	+				-3.6
1,109,150	-				+0.4
1,109,150	-				+1.6
1,109,150	-				+1.3
1,109,150	-				+0.4
1,109,150	-				+3.1
1,109,151	+				-1.4
1,109,151	+				+1.5
1,109,151	+				-1.8
1,109,151	+				-0.9
1,109,151	+				-3.3
1,109,153	-				+1.7
1,109,153	-				+0.1
1,109,153	-				-0.5
1,109,153	-				-1.5
1,109,153	-				+2.3
1,109,153	-				-0.8
1,109,153	-				+1.8
1,109,153	-				-4.4
1,109,153	-				-0.7
1,109,153	-				-2.3
1,109,153	-				+0.5
1,109,153	-				+0.7
1,109,154	+				-1.1
1,109,154	+				-1.6
1,109,154	+				-0.1
1,109,154	+				-1.4
1,109,154	+				-0.8
1,109,154	+				-1.5
1,109,154	+				+1.8
1,109,154	+				-1.5
1,109,155	-				-3.9
1,109,155	-				+0.6
1,109,155	-				+1.1
1,109,155	-				-0.0
1,109,155	-				+1.1
1,109,155	-				+1.0
1,109,156	+				+0.9
1,109,156	+				+1.8
1,109,156	+				+0.3
1,109,156	+				-0.8
1,109,156	+				-0.1
1,109,156	+				+4.2
1,109,156	+				-2.5
1,109,157	-				-0.4
1,109,157	-				-2.9
1,109,157	-				+1.8
1,109,157	-				+1.7
1,109,157	-				-2.4
1,109,157	-				+0.4
1,109,157	-				+2.7
1,109,157	-				-1.1
1,109,157	-				-1.7
1,109,157	-				-1.7
1,109,157	-				+0.3
1,109,157	-				-1.2
1,109,157	-				-1.3
1,109,158	+				-3.8
1,109,158	+				-2.0
1,109,158	+				+0.6
1,109,158	+				-3.1
1,109,158	+				+0.6
1,109,158	+				-2.1
1,109,161	-				+2.2
1,109,161	-				+2.1
1,109,161	-				+3.5
1,109,161	-				+2.7
1,109,168	-				+0.7
1,109,178	-				-0.3
1,109,178	-				+2.7
1,109,179	+				-0.1
1,109,185	+				+0.2
1,109,203	-				-3.7
1,109,203	-				+0.7
1,109,205	-				-1.2
1,109,205	-				-1.0
1,109,206	+				+2.4
1,109,206	+				+0.1
1,109,208	+				-2.8
1,109,253	-				+3.3
1,109,253	-				+3.4
1,109,253	-				-1.3
1,109,254	+				+1.9
1,109,254	+				-1.2
1,109,254	+				-4.1
1,109,267	-				+0.1
1,109,267	-				+0.9
1,109,268	+				-1.3
1,109,269	-				-3.1
1,109,269	-				-4.4
1,109,269	-				-1.8
1,109,269	-				+3.0
1,109,269	-				+1.4
1,109,269	-				+2.7
1,109,269	-				-1.4
1,109,269	-				-0.1
1,109,269	-				+0.2
1,109,269	-				+1.9
1,109,269	-				+0.1
1,109,270	+				-3.9
1,109,270	+				-1.7
1,109,270	+				-1.4
1,109,270	+				-2.6
1,109,270	+				+1.4
1,109,270	+				+2.1
1,109,270	+				-0.8
1,109,270	+				+1.8
1,109,349	-		MMJJ_RS05960	0.11	+0.1
1,109,350	+		MMJJ_RS05960	0.11	+2.1
1,109,358	+		MMJJ_RS05960	0.12	+1.3
1,109,484	-		MMJJ_RS05960	0.31	+2.1
1,109,484	-		MMJJ_RS05960	0.31	+2.1
1,109,484	-		MMJJ_RS05960	0.31	-0.4
1,109,484	-		MMJJ_RS05960	0.31	-3.5
1,109,484	-		MMJJ_RS05960	0.31	-1.1
1,109,484	-		MMJJ_RS05960	0.31	-2.7
1,109,484	-		MMJJ_RS05960	0.31	-2.4
1,109,562	+		MMJJ_RS05960	0.42	-1.7
1,109,562	+		MMJJ_RS05960	0.42	-1.3
1,109,592	-		MMJJ_RS05960	0.46	+2.1
1,109,633	+		MMJJ_RS05960	0.52	+1.0
1,109,655	+		MMJJ_RS05960	0.55	-0.7
1,109,688	+		MMJJ_RS05960	0.60	-0.0
1,109,693	-		MMJJ_RS05960	0.61	-1.5
1,109,694	+		MMJJ_RS05960	0.61	+0.4
1,109,694	+		MMJJ_RS05960	0.61	-0.7
1,109,694	+		MMJJ_RS05960	0.61	+2.2
1,109,697	+		MMJJ_RS05960	0.61	-1.0
1,109,714	-		MMJJ_RS05960	0.64	-2.9
1,109,721	-		MMJJ_RS05960	0.65	-0.8
1,109,733	-		MMJJ_RS05960	0.67	-0.8
1,109,733	-		MMJJ_RS05960	0.67	+1.1
1,109,734	+		MMJJ_RS05960	0.67	-1.3
1,109,734	+		MMJJ_RS05960	0.67	-2.0
1,109,825	-		MMJJ_RS05960	0.80	-2.8
1,109,825	-		MMJJ_RS05960	0.80	+0.2
1,109,826	+		MMJJ_RS05960	0.80	-1.4
1,109,871	-		MMJJ_RS05960	0.86	+1.1
1,109,871	-		MMJJ_RS05960	0.86	+0.8
1,109,874	-		MMJJ_RS05960	0.87	-2.3
1,109,874	-		MMJJ_RS05960	0.87	-1.3
1,109,875	+		MMJJ_RS05960	0.87	+0.2
1,109,875	+		MMJJ_RS05960	0.87	-0.4
1,109,924	-				-1.0
1,109,925	+				-2.0
1,109,941	-				+1.7
1,109,941	-				+2.6
1,110,026	-				+1.4
1,110,050	+				+1.7